Wall clock time and date at job start Tue Mar 31 2020 17:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31795 * 119.08167 * 2 1 4 4 C 1.32549 * 121.00732 * 180.02562 * 3 2 1 5 5 C 1.38119 * 119.20254 * 359.97438 * 4 3 2 6 6 C 1.39619 * 118.32925 * 0.28015 * 5 4 3 7 7 N 1.38548 * 120.52939 * 179.72294 * 6 5 4 8 8 C 1.46500 * 119.99814 * 359.97438 * 7 6 5 9 9 H 1.08999 * 109.52533 * 324.87675 * 8 7 6 10 10 C 1.53100 * 109.51882 * 85.00195 * 8 7 6 11 11 O 1.42906 * 109.41322 * 62.29806 * 10 8 7 12 12 C 1.42900 * 114.09944 * 61.16025 * 11 10 8 13 13 C 1.53095 * 109.41341 * 298.83842 * 12 11 10 14 14 C 1.53174 * 109.52567 * 204.68589 * 8 7 6 15 15 H 1.08997 * 109.55064 * 177.21212 * 14 8 7 16 16 N 1.46501 * 109.54166 * 56.94218 * 14 8 7 17 17 C 1.34775 * 119.99965 * 155.00469 * 16 14 8 18 18 O 1.21280 * 119.99926 * 359.97438 * 17 16 14 19 19 C 1.50699 * 120.00200 * 180.02562 * 17 16 14 20 20 H 1.09001 * 109.46971 * 299.99356 * 19 17 16 21 21 C 1.52999 * 109.47162 * 59.99231 * 19 17 16 22 22 C 1.50696 * 109.47550 * 179.97438 * 19 17 16 23 23 H 1.08004 * 119.99604 * 359.97438 * 22 19 17 24 24 C 1.37878 * 120.00511 * 179.97438 * 22 19 17 25 25 N 1.31513 * 119.99561 * 359.97438 * 24 22 19 26 26 Si 1.86797 * 120.00143 * 179.97438 * 24 22 19 27 27 H 1.48498 * 109.47206 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47069 * 119.99963 * 26 24 22 29 29 H 1.48499 * 109.47056 * 239.99707 * 26 24 22 30 30 N 1.31745 * 119.08765 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47539 * 89.99796 * 1 2 3 32 32 H 1.09006 * 109.46942 * 209.99872 * 1 2 3 33 33 H 1.09007 * 109.46950 * 329.99395 * 1 2 3 34 34 H 1.08006 * 120.39643 * 180.02562 * 4 3 2 35 35 H 1.08002 * 120.83114 * 179.97438 * 5 4 3 36 36 H 0.96995 * 120.00347 * 179.97438 * 7 6 5 37 37 H 1.09005 * 109.47825 * 182.27945 * 10 8 7 38 38 H 1.08996 * 109.48191 * 302.30930 * 10 8 7 39 39 H 1.09002 * 109.48663 * 58.81777 * 12 11 10 40 40 H 1.08997 * 109.48008 * 178.84949 * 12 11 10 41 41 H 1.08999 * 109.52346 * 177.51680 * 13 12 11 42 42 H 1.09000 * 109.52472 * 297.64211 * 13 12 11 43 43 H 0.96997 * 119.99792 * 335.00529 * 16 14 8 44 44 H 1.08998 * 109.46890 * 60.00927 * 21 19 17 45 45 H 1.09004 * 109.46745 * 180.02562 * 21 19 17 46 46 H 1.08995 * 109.47448 * 299.99943 * 21 19 17 47 47 H 0.96996 * 120.00269 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1518 0.0000 4 6 3.4723 1.1963 -0.0005 5 6 4.1863 0.0140 -0.0005 6 6 3.4768 -1.1884 -0.0060 7 7 4.1470 -2.4010 -0.0120 8 6 5.6118 -2.4284 -0.0132 9 1 5.9912 -1.5924 -0.6007 10 6 6.1266 -2.3187 1.4245 11 8 5.6743 -3.4455 2.1782 12 6 6.1378 -4.7031 1.6827 13 6 5.6234 -4.9085 0.2554 14 6 6.0987 -3.7467 -0.6225 15 1 7.1877 -3.7467 -0.6691 16 7 5.5487 -3.8954 -1.9722 17 6 6.1873 -4.6604 -2.8796 18 8 7.2176 -5.2253 -2.5789 19 6 5.6219 -4.8130 -4.2681 20 1 4.6257 -5.2514 -4.2086 21 6 5.5356 -3.4398 -4.9373 22 6 6.5189 -5.7115 -5.0799 23 1 7.4096 -6.1298 -4.6349 24 6 6.2025 -5.9995 -6.3906 25 7 5.1176 -5.4904 -6.9322 26 14 7.3148 -7.1126 -7.3971 27 1 8.4616 -7.5522 -6.5622 28 1 6.5478 -8.3013 -7.8488 29 1 7.8190 -6.3699 -8.5800 30 7 2.1474 -1.1513 -0.0005 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5140 34 1 3.9872 2.1458 -0.0001 35 1 5.2663 0.0196 -0.0013 36 1 3.6465 -3.2318 -0.0154 37 1 7.2165 -2.2984 1.4197 38 1 5.7478 -1.4026 1.8774 39 1 7.2278 -4.7140 1.6812 40 1 5.7671 -5.5045 2.3217 41 1 6.0120 -5.8468 -0.1403 42 1 4.5338 -4.9394 0.2618 43 1 4.7249 -3.4433 -2.2127 44 1 6.5317 -3.0015 -4.9969 45 1 5.1261 -3.5502 -5.9415 46 1 4.8869 -2.7897 -4.3504 47 1 4.8947 -5.6932 -7.8542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647617796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:33 Heat of formation + Delta-G solvation = -56.047120 kcal Electronic energy + Delta-G solvation = -29522.543323 eV Core-core repulsion = 25511.377865 eV Total energy + Delta-G solvation = -4011.165457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07185 -41.24698 -39.95715 -37.33541 -35.94188 -35.70013 -34.31566 -33.26033 -32.69448 -31.80160 -30.38923 -29.21813 -27.25104 -26.14517 -24.89780 -24.68613 -23.99311 -23.25238 -21.15650 -20.87623 -19.42077 -18.42282 -18.19566 -17.89290 -17.44837 -17.18105 -16.66690 -16.50042 -16.31643 -16.17811 -15.93556 -15.57337 -15.49228 -15.25251 -14.72952 -14.46083 -14.30157 -14.09479 -13.89942 -13.66486 -13.42763 -13.37202 -13.14366 -13.00109 -12.74284 -12.63498 -12.58906 -12.38802 -12.24439 -12.05753 -12.03816 -11.70993 -11.52477 -11.07014 -10.98585 -10.67403 -10.55200 -10.28737 -10.14237 -10.05309 -9.11486 -8.17745 -6.28623 0.13817 0.46030 1.37801 1.40166 1.53047 1.80424 1.88953 2.23987 2.45730 2.89343 2.94411 3.12207 3.25218 3.30733 3.52471 3.65484 3.74174 3.81063 4.00870 4.14358 4.21382 4.34942 4.40866 4.42198 4.53697 4.56448 4.62623 4.66239 4.68971 4.77413 4.79503 4.87331 4.88279 4.93195 4.97353 5.06822 5.09092 5.37316 5.44438 5.51349 5.70700 5.78810 5.89280 6.12778 6.16706 6.25893 6.52179 6.63558 6.82100 7.36536 7.36939 7.48057 8.88266 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.003261 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.050341 B = 8583.319149 C =10210.478705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.341 3.659 3 N -0.583 5.583 4 C 0.172 3.828 5 C -0.302 4.302 6 C 0.431 3.569 7 N -0.694 5.694 8 C 0.121 3.879 9 H 0.114 0.886 10 C 0.050 3.950 11 O -0.386 6.386 12 C 0.067 3.933 13 C -0.164 4.164 14 C 0.138 3.862 15 H 0.095 0.905 16 N -0.721 5.721 17 C 0.528 3.472 18 O -0.577 6.577 19 C 0.023 3.977 20 H 0.035 0.965 21 C -0.117 4.117 22 C -0.527 4.527 23 H 0.052 0.948 24 C 0.018 3.982 25 N -0.912 5.912 26 Si 0.956 3.044 27 H -0.277 1.277 28 H -0.276 1.276 29 H -0.275 1.275 30 N -0.601 5.601 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.195 0.805 35 H 0.164 0.836 36 H 0.405 0.595 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.404 0.596 44 H 0.026 0.974 45 H 0.068 0.932 46 H 0.042 0.958 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.429 12.603 18.330 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 N -0.303 5.303 4 C 0.011 3.989 5 C -0.330 4.330 6 C 0.187 3.813 7 N -0.326 5.326 8 C 0.015 3.985 9 H 0.132 0.868 10 C -0.028 4.028 11 O -0.304 6.304 12 C -0.010 4.010 13 C -0.203 4.203 14 C 0.033 3.967 15 H 0.113 0.887 16 N -0.374 5.374 17 C 0.317 3.683 18 O -0.456 6.456 19 C 0.002 3.998 20 H 0.053 0.947 21 C -0.175 4.175 22 C -0.565 4.565 23 H 0.070 0.930 24 C -0.181 4.181 25 N -0.552 5.552 26 Si 0.782 3.218 27 H -0.202 1.202 28 H -0.202 1.202 29 H -0.200 1.200 30 N -0.327 5.327 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.212 0.788 35 H 0.182 0.818 36 H 0.242 0.758 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.240 0.760 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.642 12.224 18.535 22.500 hybrid contribution 0.972 -1.129 -1.322 1.992 sum -2.670 11.096 17.212 20.652 Atomic orbital electron populations 1.20628 0.84406 1.04606 1.04425 1.23463 0.98901 0.82582 0.87770 1.68331 1.11071 1.29725 1.21170 1.23450 0.89117 0.99300 0.87041 1.22406 1.03335 0.92327 1.14932 1.18763 0.88381 0.87380 0.86757 1.44475 1.05291 1.04980 1.77891 1.22065 0.79416 0.98365 0.98660 0.86804 1.23203 1.00119 0.90276 0.89250 1.87970 1.74632 1.14499 1.53335 1.22630 0.99181 0.86333 0.92817 1.22573 1.01976 0.99016 0.96714 1.21217 0.99735 0.94088 0.81644 0.88709 1.46053 1.28495 1.51314 1.11504 1.21395 0.83220 0.76207 0.87467 1.90511 1.25837 1.48250 1.80969 1.18798 0.96698 0.96209 0.88120 0.94699 1.21520 0.98897 0.94453 1.02599 1.21314 1.09283 1.29008 0.96897 0.93006 1.25621 0.96633 0.97328 0.98492 1.69965 1.25662 1.45122 1.14429 0.85534 0.78980 0.78894 0.78435 1.20174 1.20161 1.20000 1.67771 1.08435 1.32075 1.24432 0.89022 0.89475 0.88576 0.78775 0.81819 0.75768 0.89523 0.87113 0.91650 0.87241 0.91708 0.90991 0.76024 0.95465 0.91313 0.93879 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.32 71.24 0.73 -0.66 16 2 C 0.34 8.05 7.64 138.76 1.06 9.11 16 3 N -0.58 -13.25 10.33 -188.10 -1.94 -15.20 16 4 C 0.17 3.09 11.29 84.56 0.95 4.04 16 5 C -0.30 -5.38 8.94 22.57 0.20 -5.18 16 6 C 0.43 9.63 7.69 133.16 1.02 10.65 16 7 N -0.69 -14.00 4.36 -323.63 -1.41 -15.41 16 8 C 0.12 2.12 2.16 45.08 0.10 2.22 16 9 H 0.11 1.74 6.52 -2.39 -0.02 1.72 16 10 C 0.05 0.73 6.42 72.02 0.46 1.20 16 11 O -0.39 -7.35 10.67 -148.98 -1.59 -8.94 16 12 C 0.07 1.21 6.84 72.01 0.49 1.71 16 13 C -0.16 -3.75 5.53 30.69 0.17 -3.58 16 14 C 0.14 3.33 2.27 45.11 0.10 3.43 16 15 H 0.09 2.51 7.58 -2.39 -0.02 2.49 16 16 N -0.72 -22.41 4.93 -441.97 -2.18 -24.59 16 17 C 0.53 22.78 7.12 87.66 0.62 23.41 16 18 O -0.58 -28.53 15.12 -3.03 -0.05 -28.57 16 19 C 0.02 1.13 2.64 -12.29 -0.03 1.10 16 20 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 21 C -0.12 -5.28 8.86 71.98 0.64 -4.64 16 22 C -0.53 -30.01 8.37 25.60 0.21 -29.80 16 23 H 0.05 3.14 6.75 -2.91 -0.02 3.12 16 24 C 0.02 1.02 5.30 84.66 0.45 1.47 16 25 N -0.91 -51.21 11.32 21.45 0.24 -50.96 16 26 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 27 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 30 N -0.60 -15.34 10.37 -185.44 -1.92 -17.27 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.16 1.97 6.36 -2.91 -0.02 1.95 16 36 H 0.41 8.99 7.20 -92.71 -0.67 8.32 16 37 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.11 1.43 7.81 -2.39 -0.02 1.41 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 1.63 6.73 -2.39 -0.02 1.61 16 43 H 0.40 11.71 7.45 -92.71 -0.69 11.02 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 3.48 6.07 -2.38 -0.01 3.47 16 46 H 0.04 1.61 7.56 -2.39 -0.02 1.59 16 47 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -71.09 379.05 0.02 -71.06 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: -0.34 Total: 28.87 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 7.19 Total: 14.47 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -7.22 Total: -123.43 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.64 Total: -37.51 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -71.09 0.02 -71.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647617796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.016 kcal (2) G-P(sol) polarization free energy of solvation -71.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds