Wall clock time and date at job start Tue Mar 31 2020 19:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47544 * 2 1 4 4 N 1.31923 * 120.17239 * 274.66237 * 3 2 1 5 5 N 1.28280 * 122.32548 * 180.02562 * 4 3 2 6 6 C 1.31917 * 122.51296 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00925 * 180.02562 * 6 5 4 8 8 C 1.38504 * 119.97221 * 359.71287 * 6 5 4 9 9 C 1.39729 * 120.17099 * 94.67777 * 3 2 1 10 10 C 1.48136 * 121.14404 * 359.97438 * 9 3 2 11 11 O 1.21511 * 120.00018 * 53.76286 * 10 9 3 12 12 N 1.34774 * 119.99700 * 233.75307 * 10 9 3 13 13 C 1.47146 * 120.98615 * 355.74177 * 12 10 9 14 14 C 1.53295 * 108.38856 * 129.48431 * 13 12 10 15 15 O 1.42963 * 109.22187 * 52.29944 * 14 13 12 16 16 C 1.42961 * 114.16815 * 297.42222 * 15 14 13 17 17 H 1.08995 * 109.55247 * 302.63117 * 16 15 14 18 18 C 1.52998 * 109.51106 * 182.50534 * 16 15 14 19 19 N 1.46499 * 109.47017 * 65.25196 * 18 16 15 20 20 C 1.36945 * 119.99762 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99965 * 0.02562 * 20 19 18 22 22 C 1.38808 * 119.99889 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00391 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00013 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47089 * 60.00395 * 24 22 20 26 26 H 1.48503 * 109.47192 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47249 * 300.00027 * 24 22 20 28 28 C 1.47158 * 120.98075 * 175.75959 * 12 10 9 29 29 H 1.08998 * 109.46970 * 60.00195 * 1 2 3 30 30 H 1.08998 * 109.47264 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46920 * 299.99868 * 1 2 3 32 32 H 1.09006 * 109.46876 * 239.99789 * 2 1 3 33 33 H 1.09002 * 109.47548 * 120.00261 * 2 1 3 34 34 H 1.08998 * 109.47385 * 89.99752 * 7 6 5 35 35 H 1.09007 * 109.47072 * 209.99786 * 7 6 5 36 36 H 1.09000 * 109.47443 * 329.98962 * 7 6 5 37 37 H 1.07998 * 121.08529 * 180.28914 * 8 6 5 38 38 H 1.09007 * 109.68129 * 249.20746 * 13 12 10 39 39 H 1.08996 * 109.68185 * 9.72027 * 13 12 10 40 40 H 1.09003 * 109.51428 * 172.22619 * 14 13 12 41 41 H 1.08997 * 109.51065 * 292.37875 * 14 13 12 42 42 H 1.09000 * 109.47304 * 305.25304 * 18 16 15 43 43 H 1.08997 * 109.47001 * 185.25286 * 18 16 15 44 44 H 0.96997 * 120.00249 * 0.02562 * 19 18 16 45 45 H 0.96996 * 120.00808 * 179.97438 * 23 22 20 46 46 H 1.08993 * 109.68556 * 110.78921 * 28 12 10 47 47 H 1.09000 * 109.67957 * 350.23593 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1661 2.0768 -1.1367 5 7 2.5902 3.2865 -1.1848 6 6 2.9245 3.9641 -0.1035 7 6 3.4159 5.3836 -0.2254 8 6 2.8176 3.3727 1.1444 9 6 2.3594 2.0500 1.2040 10 6 2.2218 1.3445 2.4992 11 8 2.7577 0.2665 2.6639 12 7 1.5022 1.8985 3.4951 13 6 0.9219 3.2432 3.3530 14 6 -0.5621 3.1719 3.7305 15 8 -0.6921 2.5567 5.0144 16 6 -0.2272 1.2058 5.0660 17 1 -0.7625 0.6074 4.3287 18 6 -0.4725 0.6339 6.4637 19 7 -1.9140 0.5515 6.7115 20 6 -2.3769 0.0659 7.9054 21 1 -1.6791 -0.2559 8.6644 22 6 -3.7427 -0.0127 8.1400 23 7 -4.5931 0.3799 7.2153 24 14 -4.3740 -0.6744 9.7688 25 1 -3.8679 0.1742 10.8774 26 1 -5.8589 -0.6544 9.7691 27 1 -3.8972 -2.0684 9.9550 28 6 1.2739 1.1765 4.7569 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.5688 6.0673 -0.1704 35 1 4.1100 5.5989 0.5871 36 1 3.9245 5.5113 -1.1810 37 1 3.0819 3.9124 2.0417 38 1 1.4368 3.9373 4.0174 39 1 1.0231 3.5795 2.3212 40 1 -0.9777 4.1790 3.7655 41 1 -1.0986 2.5814 2.9879 42 1 -0.0125 1.2838 7.2081 43 1 -0.0348 -0.3621 6.5307 44 1 -2.5407 0.8401 6.0297 45 1 -5.5475 0.3247 7.3790 46 1 1.8241 1.6623 5.5626 47 1 1.6075 0.1438 4.6545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673288398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:04 Heat of formation + Delta-G solvation = -4.421858 kcal Electronic energy + Delta-G solvation = -29430.280038 eV Core-core repulsion = 25421.353220 eV Total energy + Delta-G solvation = -4008.926818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90798 -40.30511 -38.53988 -35.65905 -35.26311 -34.53888 -34.05259 -32.40397 -31.87450 -30.26074 -28.55630 -28.25095 -26.22940 -25.52800 -24.33892 -23.65706 -22.51815 -22.18975 -21.01965 -19.85461 -18.22803 -17.83364 -17.13519 -16.83925 -16.39871 -16.24996 -15.69113 -15.39551 -15.27770 -14.89529 -14.68471 -14.36610 -14.30713 -14.06449 -13.85785 -13.59544 -13.38911 -13.20903 -12.89568 -12.79215 -12.66298 -12.59077 -12.36790 -12.13217 -11.76210 -11.39787 -11.18861 -11.14513 -10.95352 -10.83407 -10.80519 -10.60982 -10.41865 -10.14181 -10.04294 -9.89933 -9.84904 -9.72017 -8.89884 -8.78004 -6.93668 -5.76080 -3.05359 0.01572 0.39438 2.10226 2.41364 3.02448 3.44431 3.46807 3.48534 3.49694 3.68832 3.79204 3.87882 4.01455 4.28432 4.47452 4.55399 4.60182 4.65858 4.77128 4.88927 4.90175 4.95540 5.01654 5.05072 5.11403 5.16560 5.18747 5.28454 5.46252 5.48283 5.50395 5.55066 5.56309 5.69162 5.72106 5.74071 5.80802 5.87090 6.00786 6.05103 6.20632 6.48032 6.61238 6.87079 7.32544 7.60471 7.68295 8.27110 8.41757 9.53514 10.09491 10.45107 11.46561 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.002598 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.222653 B =10774.063679 C =11134.029696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C 0.114 3.886 4 N -0.232 5.232 5 N -0.228 5.228 6 C 0.061 3.939 7 C -0.100 4.100 8 C -0.088 4.088 9 C -0.116 4.116 10 C 0.568 3.432 11 O -0.517 6.517 12 N -0.600 5.600 13 C 0.063 3.937 14 C 0.047 3.953 15 O -0.355 6.355 16 C 0.073 3.927 17 H 0.065 0.935 18 C 0.164 3.836 19 N -0.726 5.726 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.086 3.914 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.054 0.946 42 H 0.030 0.970 43 H 0.037 0.963 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.084 0.916 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.355 9.441 -15.620 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 C -0.031 4.031 4 N -0.074 5.074 5 N -0.071 5.071 6 C -0.083 4.083 7 C -0.159 4.159 8 C -0.118 4.118 9 C -0.131 4.131 10 C 0.354 3.646 11 O -0.392 6.392 12 N -0.333 5.333 13 C -0.060 4.060 14 C -0.032 4.032 15 O -0.273 6.273 16 C 0.014 3.986 17 H 0.083 0.917 18 C 0.036 3.964 19 N -0.371 5.371 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.037 4.037 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.174 0.826 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.221 0.779 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.399 8.867 -16.847 25.128 hybrid contribution -0.328 -0.143 1.978 2.010 sum 16.071 8.724 -14.869 23.569 Atomic orbital electron populations 1.21703 0.93167 1.03120 1.02206 1.20760 0.97183 0.88974 1.05762 1.23010 0.93025 0.98568 0.88476 1.73056 1.09290 1.01342 1.23673 1.72858 1.06170 1.01012 1.27012 1.22873 0.96545 0.99079 0.89830 1.20710 1.01989 0.88699 1.04482 1.22521 0.95997 0.93267 0.99970 1.21048 1.01236 0.95122 0.95650 1.17925 0.79094 0.85028 0.82562 1.90804 1.46474 1.20789 1.81183 1.48093 1.51613 1.17809 1.15826 1.22778 0.96533 0.83763 1.02944 1.22905 0.93150 0.99852 0.87253 1.88184 1.83586 1.26475 1.29010 1.22835 0.91308 0.83754 1.00682 0.91663 1.20612 0.88753 0.96792 0.90284 1.42212 0.99524 1.77227 1.18118 1.19169 0.90707 1.34435 0.92940 0.91160 1.24744 0.95903 1.02068 0.98144 1.69658 1.01538 1.53249 1.33585 0.86251 0.77670 0.78737 0.83412 1.21244 1.21690 1.21237 1.22477 0.97796 0.99287 0.84092 0.91995 0.90952 0.92814 0.88940 0.87871 0.89461 0.90050 0.89614 0.82583 0.89601 0.89321 0.87506 0.92749 0.95197 0.94555 0.77910 0.93460 0.89809 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.90 37.16 0.37 -1.08 16 2 C -0.09 -0.95 5.97 -27.88 -0.17 -1.11 16 3 C 0.11 1.33 6.16 -82.00 -0.51 0.82 16 4 N -0.23 -2.90 11.42 33.81 0.39 -2.52 16 5 N -0.23 -2.61 11.41 33.57 0.38 -2.23 16 6 C 0.06 0.52 6.86 -82.46 -0.57 -0.05 16 7 C -0.10 -0.47 10.19 36.01 0.37 -0.10 16 8 C -0.09 -0.72 7.35 -38.78 -0.29 -1.01 16 9 C -0.12 -1.26 4.91 -104.58 -0.51 -1.77 16 10 C 0.57 7.00 6.69 -12.20 -0.08 6.92 16 11 O -0.52 -7.81 14.66 5.36 0.08 -7.73 16 12 N -0.60 -6.88 3.02 -173.29 -0.52 -7.40 16 13 C 0.06 0.57 5.73 -3.54 -0.02 0.55 16 14 C 0.05 0.53 6.99 37.31 0.26 0.79 16 15 O -0.35 -5.76 10.33 -35.23 -0.36 -6.12 16 16 C 0.07 1.16 2.81 -26.58 -0.07 1.09 16 17 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.16 3.21 5.93 -4.04 -0.02 3.19 16 19 N -0.73 -18.45 5.55 -59.91 -0.33 -18.79 16 20 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 24 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.09 1.11 5.91 -3.53 -0.02 1.09 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.24 5.67 -51.93 -0.29 0.94 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.16 0.84 7.44 -52.49 -0.39 0.45 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.66 4.93 -51.93 -0.26 0.40 16 40 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.39 10.47 7.67 -40.82 -0.31 10.16 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.11 1.41 7.11 -51.93 -0.37 1.04 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -34.50 384.12 -7.48 -41.98 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.09 Total: 5.25 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.51 Total: 1.97 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.64 Total: -58.48 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.29 Total: -13.85 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.50 -7.48 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673288398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.556 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds