Wall clock time and date at job start Tue Mar 31 2020 19:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47544 * 2 1 4 4 N 1.31923 * 120.17239 * 274.66237 * 3 2 1 5 5 N 1.28280 * 122.32548 * 180.02562 * 4 3 2 6 6 C 1.31917 * 122.51296 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00925 * 180.02562 * 6 5 4 8 8 C 1.38504 * 119.97221 * 359.71287 * 6 5 4 9 9 C 1.39729 * 120.17099 * 94.67777 * 3 2 1 10 10 C 1.48136 * 121.14404 * 359.97438 * 9 3 2 11 11 O 1.21511 * 120.00018 * 53.76286 * 10 9 3 12 12 N 1.34774 * 119.99700 * 233.75307 * 10 9 3 13 13 C 1.47146 * 120.98615 * 355.74177 * 12 10 9 14 14 C 1.53295 * 108.38856 * 129.48431 * 13 12 10 15 15 O 1.42963 * 109.22187 * 52.29944 * 14 13 12 16 16 C 1.42961 * 114.16815 * 297.42222 * 15 14 13 17 17 H 1.08995 * 109.55247 * 302.63117 * 16 15 14 18 18 C 1.52998 * 109.51106 * 182.50534 * 16 15 14 19 19 N 1.46499 * 109.47017 * 65.25196 * 18 16 15 20 20 C 1.36945 * 119.99762 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99965 * 0.02562 * 20 19 18 22 22 C 1.38808 * 119.99889 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00391 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00013 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47089 * 60.00395 * 24 22 20 26 26 H 1.48503 * 109.47192 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47249 * 300.00027 * 24 22 20 28 28 C 1.47158 * 120.98075 * 175.75959 * 12 10 9 29 29 H 1.08998 * 109.46970 * 60.00195 * 1 2 3 30 30 H 1.08998 * 109.47264 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46920 * 299.99868 * 1 2 3 32 32 H 1.09006 * 109.46876 * 239.99789 * 2 1 3 33 33 H 1.09002 * 109.47548 * 120.00261 * 2 1 3 34 34 H 1.08998 * 109.47385 * 89.99752 * 7 6 5 35 35 H 1.09007 * 109.47072 * 209.99786 * 7 6 5 36 36 H 1.09000 * 109.47443 * 329.98962 * 7 6 5 37 37 H 1.07998 * 121.08529 * 180.28914 * 8 6 5 38 38 H 1.09007 * 109.68129 * 249.20746 * 13 12 10 39 39 H 1.08996 * 109.68185 * 9.72027 * 13 12 10 40 40 H 1.09003 * 109.51428 * 172.22619 * 14 13 12 41 41 H 1.08997 * 109.51065 * 292.37875 * 14 13 12 42 42 H 1.09000 * 109.47304 * 305.25304 * 18 16 15 43 43 H 1.08997 * 109.47001 * 185.25286 * 18 16 15 44 44 H 0.96997 * 120.00249 * 0.02562 * 19 18 16 45 45 H 0.96996 * 120.00808 * 179.97438 * 23 22 20 46 46 H 1.08993 * 109.68556 * 110.78921 * 28 12 10 47 47 H 1.09000 * 109.67957 * 350.23593 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1661 2.0768 -1.1367 5 7 2.5902 3.2865 -1.1848 6 6 2.9245 3.9641 -0.1035 7 6 3.4159 5.3836 -0.2254 8 6 2.8176 3.3727 1.1444 9 6 2.3594 2.0500 1.2040 10 6 2.2218 1.3445 2.4992 11 8 2.7577 0.2665 2.6639 12 7 1.5022 1.8985 3.4951 13 6 0.9219 3.2432 3.3530 14 6 -0.5621 3.1719 3.7305 15 8 -0.6921 2.5567 5.0144 16 6 -0.2272 1.2058 5.0660 17 1 -0.7625 0.6074 4.3287 18 6 -0.4725 0.6339 6.4637 19 7 -1.9140 0.5515 6.7115 20 6 -2.3769 0.0659 7.9054 21 1 -1.6791 -0.2559 8.6644 22 6 -3.7427 -0.0127 8.1400 23 7 -4.5931 0.3799 7.2153 24 14 -4.3740 -0.6744 9.7688 25 1 -3.8679 0.1742 10.8774 26 1 -5.8589 -0.6544 9.7691 27 1 -3.8972 -2.0684 9.9550 28 6 1.2739 1.1765 4.7569 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.5688 6.0673 -0.1704 35 1 4.1100 5.5989 0.5871 36 1 3.9245 5.5113 -1.1810 37 1 3.0819 3.9124 2.0417 38 1 1.4368 3.9373 4.0174 39 1 1.0231 3.5795 2.3212 40 1 -0.9777 4.1790 3.7655 41 1 -1.0986 2.5814 2.9879 42 1 -0.0125 1.2838 7.2081 43 1 -0.0348 -0.3621 6.5307 44 1 -2.5407 0.8401 6.0297 45 1 -5.5475 0.3247 7.3790 46 1 1.8241 1.6623 5.5626 47 1 1.6075 0.1438 4.6545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673288398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:03 Heat of formation + Delta-G solvation = -29.097688 kcal Electronic energy + Delta-G solvation = -29431.350062 eV Core-core repulsion = 25421.353220 eV Total energy + Delta-G solvation = -4009.996842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.71614 -41.26835 -39.63751 -36.78960 -36.32786 -35.92448 -34.85502 -33.90503 -32.77733 -31.82335 -29.54546 -29.00478 -27.56829 -26.41970 -25.39438 -24.90480 -23.83260 -23.07605 -22.34387 -20.76665 -19.26319 -19.00239 -18.65406 -17.88258 -17.34570 -17.18162 -16.75169 -16.59800 -16.24892 -16.09282 -15.84929 -15.59497 -15.19342 -15.04628 -14.91833 -14.75042 -14.39239 -14.32449 -14.11289 -14.00052 -13.52431 -13.32469 -13.23158 -13.09646 -12.91997 -12.76530 -12.67655 -12.33079 -12.26449 -12.11320 -12.00255 -11.88806 -11.75715 -11.57945 -11.30587 -11.17161 -10.94996 -10.68166 -10.62485 -9.79291 -9.00774 -7.93776 -5.23308 -0.75651 -0.32331 1.16096 1.48125 1.51128 1.51864 1.57822 2.25732 2.56788 2.68630 2.74977 2.88834 3.14090 3.34225 3.40278 3.48350 3.63349 3.77508 3.86436 3.89510 3.95589 4.06785 4.08314 4.17785 4.20642 4.23955 4.37419 4.40013 4.45926 4.59149 4.61561 4.68105 4.76761 4.78156 4.82814 4.87725 4.90491 4.93453 5.05773 5.07876 5.09082 5.16116 5.28871 5.49071 5.95988 6.17538 6.27304 6.66706 7.33832 7.50447 8.07718 8.31571 9.29691 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.002598 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.222653 B =10774.063679 C =11134.029696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 C 0.102 3.898 4 N -0.257 5.257 5 N -0.256 5.256 6 C 0.067 3.933 7 C -0.100 4.100 8 C -0.071 4.071 9 C -0.130 4.130 10 C 0.572 3.428 11 O -0.550 6.550 12 N -0.598 5.598 13 C 0.068 3.932 14 C 0.039 3.961 15 O -0.383 6.383 16 C 0.086 3.914 17 H 0.048 0.952 18 C 0.160 3.840 19 N -0.741 5.741 20 C -0.247 4.247 21 H 0.079 0.921 22 C -0.076 4.076 23 N -0.970 5.970 24 Si 0.976 3.024 25 H -0.277 1.277 26 H -0.296 1.296 27 H -0.277 1.277 28 C 0.097 3.903 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.193 0.807 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.044 0.956 42 H 0.034 0.966 43 H 0.045 0.955 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.100 0.900 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.990 11.399 -15.128 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.044 4.044 4 N -0.098 5.098 5 N -0.098 5.098 6 C -0.078 4.078 7 C -0.158 4.158 8 C -0.100 4.100 9 C -0.144 4.144 10 C 0.359 3.641 11 O -0.429 6.429 12 N -0.330 5.330 13 C -0.054 4.054 14 C -0.038 4.038 15 O -0.302 6.302 16 C 0.027 3.973 17 H 0.066 0.934 18 C 0.033 3.967 19 N -0.384 5.384 20 C -0.379 4.379 21 H 0.097 0.903 22 C -0.268 4.268 23 N -0.620 5.620 24 Si 0.804 3.196 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.203 1.203 28 C -0.026 4.026 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.210 0.790 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.118 0.882 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 18.078 10.842 -16.372 26.691 hybrid contribution -0.771 -0.655 1.774 2.042 sum 17.307 10.186 -14.598 24.827 Atomic orbital electron populations 1.21654 0.92880 1.03448 1.01640 1.20703 0.97397 0.89087 1.05276 1.23051 0.93685 0.98763 0.88874 1.73005 1.10439 1.02192 1.24144 1.72785 1.07233 1.00968 1.28770 1.23491 0.94860 1.00352 0.89096 1.20899 1.03081 0.86222 1.05579 1.22927 0.93835 0.91993 1.01282 1.20964 1.02751 0.96380 0.94349 1.18097 0.78546 0.84530 0.82911 1.90787 1.48022 1.22296 1.81746 1.48110 1.51302 1.18549 1.15060 1.22929 0.94722 0.82862 1.04843 1.23182 0.95174 1.00371 0.85105 1.88123 1.84178 1.26160 1.31694 1.22493 0.93200 0.83768 0.97808 0.93446 1.20769 0.85614 0.97558 0.92723 1.42418 1.01770 1.77055 1.17146 1.19624 0.91137 1.33265 0.93830 0.90305 1.25601 0.96289 1.03251 1.01691 1.69826 1.01399 1.55184 1.35636 0.85180 0.76505 0.78436 0.79440 1.20270 1.22235 1.20270 1.22233 0.95417 0.99577 0.85397 0.91779 0.90217 0.93987 0.88330 0.89329 0.87744 0.87336 0.89745 0.78959 0.86831 0.87251 0.85165 0.93774 0.94804 0.93684 0.79401 0.94027 0.88190 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.90 71.98 0.71 -2.15 16 2 C -0.09 -1.90 5.97 29.85 0.18 -1.72 16 3 C 0.10 2.35 6.16 42.91 0.26 2.61 16 4 N -0.26 -6.36 11.42 -46.95 -0.54 -6.89 16 5 N -0.26 -5.55 11.41 -47.69 -0.54 -6.10 16 6 C 0.07 0.95 6.86 42.61 0.29 1.24 16 7 C -0.10 -0.54 10.19 71.24 0.73 0.19 16 8 C -0.07 -0.93 7.35 22.79 0.17 -0.76 16 9 C -0.13 -2.63 4.91 -19.83 -0.10 -2.72 16 10 C 0.57 13.47 6.69 86.87 0.58 14.05 16 11 O -0.55 -16.60 14.66 -3.75 -0.06 -16.66 16 12 N -0.60 -12.62 3.02 -820.45 -2.48 -15.10 16 13 C 0.07 1.02 5.73 86.35 0.50 1.52 16 14 C 0.04 0.83 6.99 72.08 0.50 1.33 16 15 O -0.38 -12.14 10.33 -148.98 -1.54 -13.68 16 16 C 0.09 2.74 2.81 30.69 0.09 2.82 16 17 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 18 C 0.16 6.27 5.93 86.38 0.51 6.78 16 19 N -0.74 -38.17 5.55 -343.46 -1.91 -40.08 16 20 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 21 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 22 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 23 N -0.97 -59.98 13.06 21.65 0.28 -59.69 16 24 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 28 C 0.10 2.39 5.91 86.35 0.51 2.90 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.09 2.23 5.67 -2.39 -0.01 2.21 16 34 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.11 0.05 8.09 -2.38 -0.02 0.03 16 36 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.19 1.04 7.44 -2.91 -0.02 1.01 16 38 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.11 1.22 4.93 -2.39 -0.01 1.21 16 40 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.37 20.84 7.67 -92.71 -0.71 20.13 16 45 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 46 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.10 2.60 7.11 -2.39 -0.02 2.59 16 Total: -1.00 -76.72 384.12 1.77 -74.95 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.28 Total: 25.93 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.24 Total: 9.13 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -5.18 Total: -127.86 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -1.59 Total: -30.34 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -76.72 1.77 -74.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673288398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.851 kcal (2) G-P(sol) polarization free energy of solvation -76.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds