Wall clock time and date at job start Tue Mar 31 2020 19:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.34661 * 125.80157 * 265.02575 * 3 2 1 5 5 H 0.97001 * 124.85020 * 0.02562 * 4 3 2 6 6 C 1.36444 * 110.30010 * 179.97438 * 4 3 2 7 7 C 1.34493 * 108.85554 * 0.02562 * 6 4 3 8 8 C 1.36764 * 125.80248 * 84.72194 * 3 2 1 9 9 C 1.47267 * 126.94261 * 359.95699 * 8 3 2 10 10 O 1.21625 * 119.99906 * 0.02562 * 9 8 3 11 11 N 1.34776 * 120.00080 * 180.02562 * 9 8 3 12 12 C 1.46498 * 120.00035 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47289 * 179.97438 * 12 11 9 14 14 C 1.53929 * 113.73165 * 271.72719 * 13 12 11 15 15 N 1.47963 * 86.17819 * 221.91724 * 14 13 12 16 16 C 1.46905 * 110.99818 * 137.58192 * 15 14 13 17 17 C 1.50696 * 109.46884 * 70.64208 * 16 15 14 18 18 O 1.21289 * 120.00569 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99994 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00364 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00102 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00419 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99797 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00212 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47051 * 60.00124 * 24 22 20 26 26 H 1.48500 * 109.47110 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46916 * 300.00345 * 24 22 20 28 28 C 1.47963 * 90.76230 * 24.69036 * 15 14 13 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.07996 * 125.57623 * 179.97438 * 6 4 3 35 35 H 1.07995 * 126.83167 * 179.97438 * 7 6 4 36 36 H 0.97001 * 119.99968 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.47034 * 299.99793 * 12 11 9 38 38 H 1.08997 * 109.47281 * 59.99647 * 12 11 9 39 39 H 1.09000 * 112.93419 * 43.42833 * 13 12 11 40 40 H 1.08999 * 113.76216 * 336.23692 * 14 13 12 41 41 H 1.09004 * 113.76118 * 107.60196 * 14 13 12 42 42 H 1.08994 * 109.46905 * 190.64044 * 16 15 14 43 43 H 1.08995 * 109.47096 * 310.64411 * 16 15 14 44 44 H 0.97002 * 119.99992 * 0.02562 * 19 17 16 45 45 H 0.96995 * 120.00331 * 179.97438 * 23 22 20 46 46 H 1.08998 * 113.75701 * 220.98785 * 28 15 14 47 47 H 1.09002 * 113.75441 * 89.62546 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3841 2.1320 -1.0881 5 1 2.3515 1.8027 -1.9999 6 6 2.7920 3.3823 -0.7248 7 6 2.7086 3.4953 0.6128 8 6 2.2028 2.2092 1.1045 9 6 1.9344 1.8407 2.5049 10 8 1.5153 0.7306 2.7720 11 7 2.1530 2.7337 3.4904 12 6 1.8866 2.3670 4.8835 13 6 2.2161 3.5511 5.7946 14 6 3.6832 3.5856 6.2594 15 7 3.1500 3.9600 7.5879 16 6 3.8509 3.2387 8.6587 17 6 5.2563 3.7680 8.7843 18 8 5.6368 4.6580 8.0535 19 7 6.0904 3.2523 9.7089 20 6 7.3691 3.7334 9.8229 21 1 7.7080 4.5259 9.1721 22 6 8.2290 3.2021 10.7764 23 7 7.8166 2.2381 11.5686 24 14 9.9710 3.8581 10.9322 25 1 9.9273 5.3067 11.2560 26 1 10.6794 3.1295 12.0151 27 1 10.6914 3.6593 9.6489 28 6 1.8564 3.3146 7.2725 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1278 4.1548 -1.4007 35 1 2.9602 4.3618 1.2062 36 1 2.4875 3.6189 3.2774 37 1 0.8347 2.1039 4.9951 38 1 2.5057 1.5134 5.1593 39 1 1.8560 4.5021 5.4022 40 1 4.1727 2.6119 6.2410 41 1 4.2752 4.3696 5.7870 42 1 3.3224 3.3839 9.6008 43 1 3.8830 2.1757 8.4201 44 1 5.7863 2.5402 10.2931 45 1 8.4168 1.8669 12.2340 46 1 0.9889 3.8819 7.6096 47 1 1.8118 2.2616 7.5505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713901267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:42 Heat of formation + Delta-G solvation = -28.053672 kcal Electronic energy + Delta-G solvation = -27710.243475 eV Core-core repulsion = 23700.291905 eV Total energy + Delta-G solvation = -4009.951571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.18951 -41.35200 -40.00744 -39.39755 -36.03042 -35.71416 -34.43490 -33.33046 -32.51411 -31.56071 -29.31244 -28.50998 -27.05379 -26.70319 -24.77667 -23.87571 -22.83745 -21.50061 -21.17320 -20.94833 -20.04560 -19.85088 -18.54355 -17.85284 -17.37125 -16.99373 -16.62822 -16.51907 -16.37414 -16.05337 -15.77546 -15.38419 -15.30284 -15.15270 -14.90977 -14.66385 -14.37298 -14.14940 -13.95028 -13.67690 -13.53257 -13.38544 -13.29661 -13.06201 -13.01592 -12.84572 -12.45176 -12.35721 -12.24721 -12.13355 -11.85674 -11.74706 -11.63662 -11.49182 -10.83728 -10.33730 -10.09918 -10.02866 -9.71826 -9.65081 -9.10076 -8.47398 -5.96431 0.78253 1.38837 1.40283 1.51666 1.57198 2.03745 2.15593 2.28167 2.55888 2.62148 2.83469 3.18889 3.28867 3.49052 3.71961 3.81694 4.05193 4.13839 4.19997 4.22763 4.31464 4.34316 4.42394 4.44904 4.51007 4.53188 4.55844 4.66004 4.69996 4.72886 4.86090 4.91046 4.94373 5.00359 5.09705 5.25451 5.32720 5.33307 5.38530 5.42500 5.57208 5.82790 5.90186 6.01244 6.08279 6.58917 6.63280 6.74429 7.11268 7.39651 7.54492 8.10185 8.69864 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016660 B = 0.001948 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.251548 B =14369.375466 C =14955.908634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.061 4.061 3 C 0.101 3.899 4 N -0.539 5.539 5 H 0.432 0.568 6 C -0.004 4.004 7 C -0.189 4.189 8 C -0.268 4.268 9 C 0.581 3.419 10 O -0.587 6.587 11 N -0.718 5.718 12 C 0.138 3.862 13 C -0.105 4.105 14 C 0.019 3.981 15 N -0.480 5.480 16 C 0.022 3.978 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.575 5.575 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.016 3.984 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.205 0.795 35 H 0.156 0.844 36 H 0.410 0.590 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.119 0.881 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.112 0.888 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.114 -2.465 -25.195 30.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.018 4.018 4 N -0.135 5.135 5 H 0.272 0.728 6 C -0.131 4.131 7 C -0.213 4.213 8 C -0.278 4.278 9 C 0.372 3.628 10 O -0.469 6.469 11 N -0.369 5.369 12 C 0.014 3.986 13 C -0.124 4.124 14 C -0.110 4.110 15 N -0.203 5.203 16 C -0.110 4.110 17 C 0.227 3.773 18 O -0.504 6.504 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.113 4.113 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.222 0.778 35 H 0.174 0.826 36 H 0.246 0.754 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.137 0.863 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.130 0.870 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.014 -2.077 -25.203 29.933 hybrid contribution 1.230 -0.640 0.332 1.426 sum -14.784 -2.718 -24.871 29.061 Atomic orbital electron populations 1.21590 0.93717 1.02479 1.01381 1.20260 0.96921 0.88860 1.03906 1.20462 0.99984 0.95082 0.86304 1.41614 1.51033 1.11799 1.09044 0.72820 1.22285 1.05998 0.88365 0.96469 1.22310 1.06854 0.97095 0.95031 1.20240 1.17948 0.97896 0.91741 1.17753 0.76277 0.83673 0.85121 1.90706 1.48657 1.22655 1.84910 1.45716 1.67641 1.17375 1.06135 1.21267 1.01247 0.96267 0.79798 1.23131 0.94780 0.99621 0.94847 1.23817 0.96747 0.99587 0.90825 1.68408 1.03735 1.46242 1.01937 1.22360 0.92103 0.97147 0.99358 1.20758 0.88313 0.85369 0.82840 1.90478 1.78459 1.34306 1.47153 1.41954 1.11693 1.35032 1.32546 1.19621 0.89090 1.19247 1.18387 0.90354 1.26074 1.03952 0.96334 0.95078 1.69668 1.38655 1.26439 1.21386 0.84975 0.76772 0.78345 0.78162 1.19641 1.19410 1.19699 1.24084 0.93965 0.99899 0.93339 0.91094 0.94393 0.91867 0.90561 0.88834 0.77833 0.82648 0.75390 0.90542 0.92905 0.86267 0.92568 0.91163 0.87252 0.90846 0.77055 0.91278 0.87000 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.89 71.98 0.71 -1.34 16 2 C -0.06 -0.99 5.78 29.85 0.17 -0.82 16 3 C 0.10 1.79 6.43 41.78 0.27 2.06 16 4 N -0.54 -5.68 5.90 -182.72 -1.08 -6.76 16 5 H 0.43 1.47 8.96 -92.71 -0.83 0.64 16 6 C 0.00 -0.04 11.89 83.12 0.99 0.95 16 7 C -0.19 -3.06 10.56 23.62 0.25 -2.81 16 8 C -0.27 -5.84 6.29 -19.04 -0.12 -5.96 16 9 C 0.58 15.29 7.81 86.62 0.68 15.96 16 10 O -0.59 -18.78 14.72 -4.11 -0.06 -18.84 16 11 N -0.72 -15.83 5.55 -466.53 -2.59 -18.42 16 12 C 0.14 3.04 5.53 86.38 0.48 3.52 16 13 C -0.10 -2.27 3.94 -10.15 -0.04 -2.31 16 14 C 0.02 0.60 6.31 86.40 0.55 1.14 16 15 N -0.48 -15.69 5.95 -912.47 -5.43 -21.11 16 16 C 0.02 0.79 5.31 85.55 0.45 1.24 16 17 C 0.44 21.67 7.59 87.66 0.67 22.34 16 18 O -0.62 -35.08 15.12 -3.06 -0.05 -35.12 16 19 N -0.57 -30.42 5.29 -306.99 -1.62 -32.04 16 20 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 23 N -0.92 -50.63 13.05 21.66 0.28 -50.34 16 24 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 28 C 0.02 0.35 7.54 86.40 0.65 1.00 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.79 7.92 -2.39 -0.02 0.77 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.69 6.77 -2.39 -0.02 1.67 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.20 0.66 8.06 -2.91 -0.02 0.63 16 35 H 0.16 2.02 7.69 -2.91 -0.02 2.00 16 36 H 0.41 7.42 7.60 -92.71 -0.70 6.72 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.35 7.83 -2.39 -0.02 1.33 16 39 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.06 1.85 7.53 -2.39 -0.02 1.83 16 41 H 0.07 2.48 8.09 -2.39 -0.02 2.46 16 42 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 43 H 0.07 2.35 7.69 -2.39 -0.02 2.33 16 44 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 45 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 46 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.08 1.69 7.75 -2.39 -0.02 1.67 16 Total: -1.00 -79.14 392.76 -2.78 -81.92 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -1.25 Total: 38.95 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 6.98 Total: 16.06 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -10.44 Total: -128.68 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -0.11 Total: -53.97 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -79.14 -2.78 -81.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713901267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.871 kcal (2) G-P(sol) polarization free energy of solvation -79.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds