Wall clock time and date at job start Tue Mar 31 2020 18:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46895 * 2 1 4 4 N 1.30526 * 119.70582 * 0.02562 * 3 2 1 5 5 N 1.28268 * 122.98481 * 180.02562 * 4 3 2 6 6 H 0.97000 * 119.02496 * 179.97438 * 5 4 3 7 7 C 1.34674 * 121.93948 * 0.02562 * 5 4 3 8 8 O 1.21907 * 120.47026 * 179.97438 * 7 5 4 9 9 C 1.42330 * 119.06595 * 359.97438 * 7 5 4 10 10 C 1.47407 * 121.29999 * 180.02562 * 9 7 5 11 11 O 1.21600 * 120.00061 * 82.65056 * 10 9 7 12 12 N 1.34774 * 120.00032 * 262.64840 * 10 9 7 13 13 C 1.46966 * 120.59762 * 354.79310 * 12 10 9 14 14 C 1.53369 * 108.63871 * 125.04392 * 13 12 10 15 15 N 1.46968 * 108.63151 * 49.42813 * 14 13 12 16 16 C 1.36932 * 120.59291 * 124.75309 * 15 14 13 17 17 H 1.08005 * 119.99993 * 212.12938 * 16 15 14 18 18 C 1.38810 * 120.00183 * 32.12628 * 16 15 14 19 19 N 1.31617 * 119.99957 * 11.44761 * 18 16 15 20 20 Si 1.86801 * 120.00197 * 191.44645 * 18 16 15 21 21 H 1.48503 * 109.46937 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47225 * 119.99687 * 20 18 16 23 23 H 1.48496 * 109.47132 * 240.00134 * 20 18 16 24 24 C 1.46965 * 118.80919 * 304.76889 * 15 14 13 25 25 C 1.46968 * 120.59389 * 175.06773 * 12 10 9 26 26 C 1.39316 * 117.39840 * 0.27555 * 9 7 5 27 27 C 1.50697 * 120.99283 * 179.70527 * 26 9 7 28 28 C 1.53001 * 109.47311 * 94.09196 * 27 26 9 29 29 H 1.09003 * 109.47533 * 59.99913 * 1 2 3 30 30 H 1.09004 * 109.47526 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47154 * 299.99844 * 1 2 3 32 32 H 1.09005 * 109.46845 * 240.00764 * 2 1 3 33 33 H 1.08996 * 109.47068 * 120.00562 * 2 1 3 34 34 H 1.08999 * 109.60970 * 244.79650 * 13 12 10 35 35 H 1.09008 * 109.60458 * 5.29831 * 13 12 10 36 36 H 1.08996 * 109.61027 * 289.67889 * 14 13 12 37 37 H 1.08999 * 109.60616 * 169.16829 * 14 13 12 38 38 H 0.97007 * 119.99767 * 180.02562 * 19 18 16 39 39 H 1.08992 * 109.61501 * 295.48360 * 24 15 14 40 40 H 1.09005 * 109.74850 * 175.05442 * 24 15 14 41 41 H 1.09000 * 109.60900 * 354.69965 * 25 12 10 42 42 H 1.09006 * 109.60725 * 115.03584 * 25 12 10 43 43 H 1.08998 * 109.47142 * 214.10047 * 27 26 9 44 44 H 1.09005 * 109.46905 * 334.09517 * 27 26 9 45 45 H 1.08994 * 109.47001 * 300.00570 * 28 27 26 46 46 H 1.09005 * 109.46874 * 60.00301 * 28 27 26 47 47 H 1.09000 * 109.47077 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.1789 2.4085 0.0005 5 7 1.5366 3.6403 0.0001 6 1 0.8533 4.3288 0.0001 7 6 2.8328 4.0059 -0.0015 8 8 3.1425 5.1849 -0.0024 9 6 3.8359 2.9962 -0.0021 10 6 5.2692 3.3407 -0.0032 11 8 5.8297 3.6140 1.0407 12 7 5.9584 3.3529 -1.1613 13 6 5.3252 2.9154 -2.4134 14 6 5.4583 4.0391 -3.4486 15 7 6.8586 4.4843 -3.4810 16 6 7.5607 4.4909 -4.6566 17 1 8.6244 4.3038 -4.6514 18 6 6.9053 4.7381 -5.8551 19 7 5.6675 5.1854 -5.8482 20 14 7.7802 4.4359 -7.4777 21 1 9.1537 3.9366 -7.2140 22 1 7.0291 3.4248 -8.2643 23 1 7.8532 5.7054 -8.2446 24 6 7.4918 4.9218 -2.2291 25 6 7.3587 3.7981 -1.1938 26 6 3.4104 1.6697 -0.0070 27 6 4.4034 0.5362 -0.0147 28 6 4.6658 0.0782 1.4214 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.8230 2.0182 -2.7811 35 1 4.2705 2.7047 -2.2356 36 1 4.8156 4.8734 -3.1677 37 1 5.1699 3.6668 -4.4316 38 1 5.2094 5.3577 -6.6858 39 1 6.9939 5.8189 -1.8613 40 1 8.5464 5.1345 -2.4044 41 1 7.6471 4.1703 -0.2107 42 1 8.0017 2.9629 -1.4718 43 1 4.0013 -0.2952 -0.5935 44 1 5.3370 0.8741 -0.4645 45 1 5.0679 0.9097 2.0002 46 1 3.7322 -0.2597 1.8713 47 1 5.3844 -0.7413 1.4159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268285336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:23 Heat of formation + Delta-G solvation = 10.696710 kcal Electronic energy + Delta-G solvation = -30586.403504 eV Core-core repulsion = 26578.132276 eV Total energy + Delta-G solvation = -4008.271228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.20057 -39.57160 -38.18673 -36.86640 -36.17106 -34.12155 -33.74906 -31.75549 -31.09987 -30.24456 -29.94584 -27.29156 -26.24848 -24.96368 -23.93381 -23.06202 -22.52246 -21.83693 -20.85079 -19.60551 -18.34383 -18.09841 -17.13488 -16.50041 -16.18266 -15.89381 -15.65248 -14.95726 -14.88983 -14.74927 -14.63214 -14.15229 -13.84827 -13.69777 -13.43220 -13.32523 -13.25425 -13.04216 -12.82948 -12.51199 -12.32449 -11.98158 -11.77448 -11.71888 -11.59715 -11.47467 -11.32255 -11.02375 -10.89705 -10.75228 -10.52530 -10.25775 -10.22747 -10.13094 -9.97219 -9.84259 -9.49969 -8.62783 -8.55560 -8.31549 -6.67187 -5.86113 -3.36573 0.17969 1.45156 2.26224 2.83627 3.10253 3.31659 3.38503 3.40381 3.42292 3.93163 4.16553 4.24910 4.42508 4.46969 4.86199 4.88937 4.94383 5.02497 5.11405 5.25365 5.26952 5.33481 5.44618 5.49553 5.59144 5.67717 5.71447 5.73850 5.76388 5.83668 5.87073 5.92864 6.00828 6.02997 6.06024 6.16455 6.22401 6.32849 6.42278 6.79613 6.91288 7.19617 7.45757 7.51133 7.70598 7.79375 7.98760 8.37325 8.40064 9.11582 9.72371 10.31984 11.21416 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.003738 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.653289 B = 7488.221371 C = 7901.054251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C 0.067 3.933 4 N -0.209 5.209 5 N -0.444 5.444 6 H 0.441 0.559 7 C 0.498 3.502 8 O -0.510 6.510 9 C -0.183 4.183 10 C 0.582 3.418 11 O -0.540 6.540 12 N -0.583 5.583 13 C 0.082 3.918 14 C 0.160 3.840 15 N -0.590 5.590 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.006 3.994 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.131 3.869 25 C 0.097 3.903 26 C 0.001 3.999 27 C -0.097 4.097 28 C -0.146 4.146 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.024 0.976 37 H 0.100 0.900 38 H 0.255 0.745 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.559 -14.373 11.766 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.096 4.096 3 C -0.105 4.105 4 N -0.033 5.033 5 N -0.192 5.192 6 H 0.287 0.713 7 C 0.293 3.707 8 O -0.385 6.385 9 C -0.199 4.199 10 C 0.367 3.633 11 O -0.418 6.418 12 N -0.314 5.314 13 C -0.042 4.042 14 C 0.034 3.966 15 N -0.313 5.313 16 C -0.386 4.386 17 H 0.085 0.915 18 C -0.193 4.193 19 N -0.547 5.547 20 Si 0.735 3.265 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.216 1.216 24 C 0.004 3.996 25 C -0.026 4.026 26 C -0.006 4.006 27 C -0.135 4.135 28 C -0.204 4.204 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.118 0.882 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.914 -13.305 12.135 20.557 hybrid contribution 0.707 0.412 -1.041 1.325 sum -9.207 -12.893 11.094 19.341 Atomic orbital electron populations 1.21619 0.93833 1.01561 1.03135 1.20403 0.97485 0.88072 1.03689 1.21562 0.88653 0.95726 1.04536 1.70614 1.32894 0.90559 1.09261 1.44696 1.09078 1.04816 1.60628 0.71328 1.17666 0.82983 0.90103 0.79941 1.91057 1.80119 1.17646 1.49655 1.21477 0.95971 0.93009 1.09416 1.17286 0.84346 0.77547 0.84072 1.90757 1.69612 1.49951 1.31455 1.47982 1.13416 1.62823 1.07221 1.22684 0.95965 1.00439 0.85120 1.21145 0.86121 0.92310 0.97057 1.43930 1.09717 1.74214 1.03411 1.19239 0.92919 1.42575 0.83834 0.91473 1.25216 0.96887 0.98598 0.98615 1.69985 1.11846 1.47135 1.25738 0.86171 0.79104 0.77515 0.83662 1.20129 1.21512 1.21578 1.21318 0.97904 0.93344 0.87080 1.22289 0.80180 0.98960 1.01200 1.21430 0.94913 0.94289 0.89950 1.20784 0.97832 0.95350 0.99551 1.21734 1.02067 1.02072 0.94487 0.91945 0.92330 0.92130 0.89111 0.89260 0.91386 0.92053 0.95776 0.88215 0.93501 0.95638 0.91283 0.89862 0.91567 0.88891 0.89584 0.91764 0.92144 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.13 37.16 0.34 -0.54 16 2 C -0.06 -0.37 5.19 -27.88 -0.14 -0.51 16 3 C 0.07 0.68 6.77 -82.47 -0.56 0.12 16 4 N -0.21 -2.30 10.03 33.66 0.34 -1.97 16 5 N -0.44 -5.65 6.16 29.26 0.18 -5.47 16 6 H 0.44 4.47 8.91 -190.56 -1.70 2.77 16 7 C 0.50 8.57 7.81 -14.73 -0.12 8.45 16 8 O -0.51 -10.89 17.48 5.00 0.09 -10.81 16 9 C -0.18 -3.02 3.90 -104.19 -0.41 -3.43 16 10 C 0.58 11.24 5.47 -12.53 -0.07 11.17 16 11 O -0.54 -11.76 16.53 5.28 0.09 -11.67 16 12 N -0.58 -11.17 2.78 -173.75 -0.48 -11.65 16 13 C 0.08 1.54 6.16 -3.60 -0.02 1.52 16 14 C 0.16 3.81 5.46 -3.60 -0.02 3.79 16 15 N -0.59 -14.73 2.95 -172.04 -0.51 -15.23 16 16 C -0.26 -6.85 9.57 -15.06 -0.14 -6.99 16 17 H 0.07 1.75 7.86 -52.48 -0.41 1.34 16 18 C 0.01 0.16 5.03 -17.43 -0.09 0.07 16 19 N -0.90 -25.79 11.12 55.49 0.62 -25.17 16 20 Si 0.91 21.11 29.57 -169.99 -5.03 16.08 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.13 2.85 6.67 -3.60 -0.02 2.82 16 25 C 0.10 1.85 6.58 -3.60 -0.02 1.82 16 26 C 0.00 0.01 4.72 -103.55 -0.49 -0.48 16 27 C -0.10 -0.95 5.36 -27.88 -0.15 -1.10 16 28 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 29 H 0.06 0.43 8.06 -51.93 -0.42 0.02 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 32 H 0.09 0.47 7.57 -51.93 -0.39 0.07 16 33 H 0.09 0.44 7.01 -51.93 -0.36 0.07 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.05 5.94 -51.92 -0.31 0.74 16 36 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 2.56 6.10 -51.93 -0.32 2.25 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 1.41 7.94 -51.93 -0.41 1.00 16 41 H 0.08 1.55 7.02 -51.93 -0.36 1.19 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.09 0.64 6.95 -51.93 -0.36 0.28 16 44 H 0.09 1.02 6.62 -51.93 -0.34 0.67 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.42 7.01 -51.93 -0.36 0.05 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -34.96 375.99 -8.86 -43.82 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.27 Total: 0.61 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: -1.55 Total: 15.79 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.14 Total: -59.50 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.17 Total: -22.48 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.96 -8.86 -43.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268285336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.514 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds