Wall clock time and date at job start Tue Mar 31 2020 18:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46895 * 2 1 4 4 N 1.30526 * 119.70582 * 0.02562 * 3 2 1 5 5 N 1.28268 * 122.98481 * 180.02562 * 4 3 2 6 6 H 0.97000 * 119.02496 * 179.97438 * 5 4 3 7 7 C 1.34674 * 121.93948 * 0.02562 * 5 4 3 8 8 O 1.21907 * 120.47026 * 179.97438 * 7 5 4 9 9 C 1.42330 * 119.06595 * 359.97438 * 7 5 4 10 10 C 1.47407 * 121.29999 * 180.02562 * 9 7 5 11 11 O 1.21600 * 120.00061 * 82.65056 * 10 9 7 12 12 N 1.34774 * 120.00032 * 262.64840 * 10 9 7 13 13 C 1.46966 * 120.59762 * 354.79310 * 12 10 9 14 14 C 1.53369 * 108.63871 * 125.04392 * 13 12 10 15 15 N 1.46968 * 108.63151 * 49.42813 * 14 13 12 16 16 C 1.36932 * 120.59291 * 124.75309 * 15 14 13 17 17 H 1.08005 * 119.99993 * 212.12938 * 16 15 14 18 18 C 1.38810 * 120.00183 * 32.12628 * 16 15 14 19 19 N 1.31617 * 119.99957 * 11.44761 * 18 16 15 20 20 Si 1.86801 * 120.00197 * 191.44645 * 18 16 15 21 21 H 1.48503 * 109.46937 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47225 * 119.99687 * 20 18 16 23 23 H 1.48496 * 109.47132 * 240.00134 * 20 18 16 24 24 C 1.46965 * 118.80919 * 304.76889 * 15 14 13 25 25 C 1.46968 * 120.59389 * 175.06773 * 12 10 9 26 26 C 1.39316 * 117.39840 * 0.27555 * 9 7 5 27 27 C 1.50697 * 120.99283 * 179.70527 * 26 9 7 28 28 C 1.53001 * 109.47311 * 94.09196 * 27 26 9 29 29 H 1.09003 * 109.47533 * 59.99913 * 1 2 3 30 30 H 1.09004 * 109.47526 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47154 * 299.99844 * 1 2 3 32 32 H 1.09005 * 109.46845 * 240.00764 * 2 1 3 33 33 H 1.08996 * 109.47068 * 120.00562 * 2 1 3 34 34 H 1.08999 * 109.60970 * 244.79650 * 13 12 10 35 35 H 1.09008 * 109.60458 * 5.29831 * 13 12 10 36 36 H 1.08996 * 109.61027 * 289.67889 * 14 13 12 37 37 H 1.08999 * 109.60616 * 169.16829 * 14 13 12 38 38 H 0.97007 * 119.99767 * 180.02562 * 19 18 16 39 39 H 1.08992 * 109.61501 * 295.48360 * 24 15 14 40 40 H 1.09005 * 109.74850 * 175.05442 * 24 15 14 41 41 H 1.09000 * 109.60900 * 354.69965 * 25 12 10 42 42 H 1.09006 * 109.60725 * 115.03584 * 25 12 10 43 43 H 1.08998 * 109.47142 * 214.10047 * 27 26 9 44 44 H 1.09005 * 109.46905 * 334.09517 * 27 26 9 45 45 H 1.08994 * 109.47001 * 300.00570 * 28 27 26 46 46 H 1.09005 * 109.46874 * 60.00301 * 28 27 26 47 47 H 1.09000 * 109.47077 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.1789 2.4085 0.0005 5 7 1.5366 3.6403 0.0001 6 1 0.8533 4.3288 0.0001 7 6 2.8328 4.0059 -0.0015 8 8 3.1425 5.1849 -0.0024 9 6 3.8359 2.9962 -0.0021 10 6 5.2692 3.3407 -0.0032 11 8 5.8297 3.6140 1.0407 12 7 5.9584 3.3529 -1.1613 13 6 5.3252 2.9154 -2.4134 14 6 5.4583 4.0391 -3.4486 15 7 6.8586 4.4843 -3.4810 16 6 7.5607 4.4909 -4.6566 17 1 8.6244 4.3038 -4.6514 18 6 6.9053 4.7381 -5.8551 19 7 5.6675 5.1854 -5.8482 20 14 7.7802 4.4359 -7.4777 21 1 9.1537 3.9366 -7.2140 22 1 7.0291 3.4248 -8.2643 23 1 7.8532 5.7054 -8.2446 24 6 7.4918 4.9218 -2.2291 25 6 7.3587 3.7981 -1.1938 26 6 3.4104 1.6697 -0.0070 27 6 4.4034 0.5362 -0.0147 28 6 4.6658 0.0782 1.4214 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.8230 2.0182 -2.7811 35 1 4.2705 2.7047 -2.2356 36 1 4.8156 4.8734 -3.1677 37 1 5.1699 3.6668 -4.4316 38 1 5.2094 5.3577 -6.6858 39 1 6.9939 5.8189 -1.8613 40 1 8.5464 5.1345 -2.4044 41 1 7.6471 4.1703 -0.2107 42 1 8.0017 2.9629 -1.4718 43 1 4.0013 -0.2952 -0.5935 44 1 5.3370 0.8741 -0.4645 45 1 5.0679 0.9097 2.0002 46 1 3.7322 -0.2597 1.8713 47 1 5.3844 -0.7413 1.4159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268285336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:22 Heat of formation + Delta-G solvation = -14.133897 kcal Electronic energy + Delta-G solvation = -30587.480240 eV Core-core repulsion = 26578.132276 eV Total energy + Delta-G solvation = -4009.347964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.31210 -41.05929 -39.39390 -38.55789 -37.24137 -35.69328 -34.79939 -33.30783 -32.41704 -31.88494 -30.92462 -28.96113 -27.40461 -26.00511 -25.51548 -24.62182 -23.75763 -22.75266 -22.24256 -21.02299 -19.84935 -19.20700 -18.67513 -17.92426 -17.52651 -17.18576 -17.16287 -16.67572 -16.13192 -15.71172 -15.55048 -15.49041 -15.32534 -15.15974 -14.98383 -14.93260 -14.58631 -14.03893 -13.97289 -13.75934 -13.40092 -13.21948 -13.19819 -12.75971 -12.67153 -12.55048 -12.49482 -12.27530 -12.25714 -12.13587 -12.10325 -12.03775 -11.76974 -11.73522 -11.46731 -11.05394 -10.83661 -10.65162 -9.96743 -9.72886 -8.68079 -7.91126 -5.46910 -0.91208 0.38275 1.02591 1.47688 1.49611 1.56580 1.60633 1.82819 2.12661 2.48873 2.89461 3.09137 3.21581 3.25421 3.49956 3.55904 3.87853 4.11031 4.15224 4.17527 4.27471 4.29736 4.33682 4.41142 4.45422 4.50669 4.54486 4.65505 4.68092 4.73007 4.81334 4.94798 4.98185 5.04434 5.09041 5.13514 5.20738 5.25780 5.31172 5.38199 5.41280 5.51307 5.60855 5.62218 6.24496 6.33634 6.34270 6.89901 6.93946 7.06649 7.71676 8.29151 9.14772 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.003738 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.653289 B = 7488.221371 C = 7901.054251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C 0.073 3.927 4 N -0.202 5.202 5 N -0.432 5.432 6 H 0.451 0.549 7 C 0.489 3.511 8 O -0.575 6.575 9 C -0.238 4.238 10 C 0.586 3.414 11 O -0.573 6.573 12 N -0.588 5.588 13 C 0.103 3.897 14 C 0.170 3.830 15 N -0.605 5.605 16 C -0.266 4.266 17 H 0.075 0.925 18 C -0.046 4.046 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.297 1.297 24 C 0.130 3.870 25 C 0.106 3.894 26 C 0.040 3.960 27 C -0.102 4.102 28 C -0.142 4.142 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.078 0.922 36 H -0.021 1.021 37 H 0.079 0.921 38 H 0.252 0.748 39 H -0.005 1.005 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.138 0.862 44 H 0.067 0.933 45 H 0.029 0.971 46 H 0.085 0.915 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 -18.791 11.781 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 C -0.098 4.098 4 N -0.026 5.026 5 N -0.178 5.178 6 H 0.299 0.701 7 C 0.287 3.713 8 O -0.456 6.456 9 C -0.253 4.253 10 C 0.373 3.627 11 O -0.453 6.453 12 N -0.319 5.319 13 C -0.021 4.021 14 C 0.043 3.957 15 N -0.329 5.329 16 C -0.396 4.396 17 H 0.093 0.907 18 C -0.241 4.241 19 N -0.584 5.584 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.224 1.224 24 C 0.004 3.996 25 C -0.017 4.017 26 C 0.032 3.968 27 C -0.140 4.140 28 C -0.199 4.199 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.110 0.890 35 H 0.097 0.903 36 H -0.003 1.003 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.013 0.987 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.156 0.844 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.104 0.896 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.309 -17.766 12.170 23.875 hybrid contribution 0.736 1.691 -0.987 2.092 sum -9.573 -16.075 11.183 21.797 Atomic orbital electron populations 1.21628 0.93615 1.02738 1.02225 1.20724 0.97688 0.85090 1.06196 1.22404 0.87652 0.97503 1.02253 1.70800 1.32668 0.89889 1.09259 1.44629 1.07899 1.05922 1.59400 0.70131 1.17896 0.84399 0.89456 0.79589 1.91010 1.81258 1.19867 1.53484 1.21210 0.94180 0.94818 1.15070 1.17640 0.85412 0.76314 0.83329 1.90713 1.70790 1.51276 1.32520 1.48032 1.13478 1.62936 1.07409 1.22410 0.97470 0.98781 0.83447 1.20903 0.84995 0.92350 0.97461 1.44195 1.09976 1.74696 1.04002 1.19611 0.93457 1.41942 0.84576 0.90721 1.26019 0.97540 0.98619 1.01946 1.70169 1.13458 1.48566 1.26256 0.85088 0.78588 0.76841 0.79165 1.18621 1.21132 1.22384 1.21385 0.98021 0.93438 0.86776 1.22148 0.80893 0.98579 1.00076 1.21909 0.96470 0.93259 0.85113 1.21042 0.96483 0.95462 1.00983 1.21734 1.03810 1.01416 0.92987 0.93090 0.90163 0.92896 0.86474 0.86497 0.89036 0.90342 1.00255 0.90249 0.93904 0.98652 0.89922 0.89731 0.89205 0.84404 0.91412 0.95179 0.89627 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.13 71.98 0.66 -0.50 16 2 C -0.06 -0.43 5.19 29.85 0.15 -0.28 16 3 C 0.07 1.24 6.77 43.19 0.29 1.53 16 4 N -0.20 -4.08 10.03 -47.42 -0.48 -4.56 16 5 N -0.43 -11.03 6.16 -179.54 -1.11 -12.13 16 6 H 0.45 9.42 8.91 -220.09 -1.96 7.46 16 7 C 0.49 17.56 7.81 85.28 0.67 18.22 16 8 O -0.58 -26.57 17.48 -5.01 -0.09 -26.66 16 9 C -0.24 -7.90 3.90 -19.59 -0.08 -7.98 16 10 C 0.59 23.15 5.47 86.66 0.47 23.62 16 11 O -0.57 -25.84 16.53 -4.03 -0.07 -25.91 16 12 N -0.59 -22.76 2.78 -821.90 -2.28 -25.04 16 13 C 0.10 3.84 6.16 86.41 0.53 4.37 16 14 C 0.17 8.36 5.46 86.41 0.47 8.83 16 15 N -0.61 -30.95 2.95 -698.21 -2.06 -33.01 16 16 C -0.27 -14.32 9.57 84.03 0.80 -13.52 16 17 H 0.08 3.84 7.86 -2.91 -0.02 3.82 16 18 C -0.05 -2.50 5.03 84.86 0.43 -2.07 16 19 N -0.94 -55.23 11.12 21.65 0.24 -54.99 16 20 Si 0.98 43.50 29.57 68.60 2.03 45.53 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 24 C 0.13 5.85 6.67 86.41 0.58 6.43 16 25 C 0.11 4.06 6.58 86.41 0.57 4.63 16 26 C 0.04 0.87 4.72 -19.17 -0.09 0.78 16 27 C -0.10 -1.60 5.36 29.85 0.16 -1.44 16 28 C -0.14 -1.95 9.89 71.98 0.71 -1.23 16 29 H 0.05 0.54 8.06 -2.39 -0.02 0.52 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.52 8.06 -2.39 -0.02 0.50 16 32 H 0.12 0.40 7.57 -2.38 -0.02 0.38 16 33 H 0.12 0.36 7.01 -2.39 -0.02 0.34 16 34 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.08 2.65 5.94 -2.38 -0.01 2.63 16 36 H -0.02 -1.19 8.14 -2.39 -0.02 -1.20 16 37 H 0.08 4.22 6.10 -2.39 -0.01 4.21 16 38 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 39 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.08 3.41 7.94 -2.38 -0.02 3.39 16 41 H 0.08 3.21 7.02 -2.39 -0.02 3.20 16 42 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 43 H 0.14 0.99 6.95 -2.39 -0.02 0.98 16 44 H 0.07 1.40 6.62 -2.38 -0.02 1.38 16 45 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.08 0.73 7.01 -2.38 -0.02 0.72 16 47 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -82.36 375.99 1.56 -80.80 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.96 Total: 14.58 kcal Atomic # 6 Polarization: 35.06 SS G_CDS: 6.33 Total: 41.39 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -5.69 Total: -129.74 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.15 Total: -52.57 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -82.36 1.56 -80.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268285336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.670 kcal (2) G-P(sol) polarization free energy of solvation -82.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds