Wall clock time and date at job start Tue Mar 31 2020 18:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47157 * 2 1 4 4 C 1.52995 * 113.41094 * 290.77688 * 3 2 1 5 5 C 1.52996 * 109.47598 * 307.68912 * 4 3 2 6 6 C 1.53495 * 114.20391 * 63.97395 * 3 2 1 7 7 N 1.47062 * 87.98665 * 139.65741 * 6 3 2 8 8 C 1.34776 * 136.06000 * 152.84218 * 7 6 3 9 9 O 1.21353 * 120.00050 * 0.02562 * 8 7 6 10 10 C 1.49346 * 119.99986 * 180.02562 * 8 7 6 11 11 O 1.21388 * 119.99874 * 359.97438 * 10 8 7 12 12 N 1.34775 * 119.99856 * 180.02562 * 10 8 7 13 13 C 1.39932 * 119.99809 * 179.97438 * 12 10 8 14 14 C 1.40461 * 125.98351 * 359.70637 * 13 12 10 15 15 C 1.35213 * 107.87091 * 180.26955 * 14 13 12 16 16 N 1.34991 * 107.87531 * 359.97438 * 15 14 13 17 17 C 1.46498 * 125.97221 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47153 * 124.99770 * 17 16 15 19 19 H 1.08004 * 120.00170 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00234 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00240 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99666 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47401 * 89.99899 * 22 20 18 24 24 H 1.48501 * 109.46665 * 209.99892 * 22 20 18 25 25 H 1.48496 * 109.46919 * 329.99251 * 22 20 18 26 26 N 1.31271 * 125.97973 * 180.02562 * 13 12 10 27 27 C 1.47068 * 87.88460 * 333.10254 * 7 6 3 28 28 H 1.08998 * 109.47415 * 64.28838 * 1 2 3 29 29 H 1.09010 * 109.46813 * 184.28807 * 1 2 3 30 30 H 1.08996 * 109.47196 * 304.28126 * 1 2 3 31 31 H 1.09007 * 109.47260 * 240.00380 * 2 1 3 32 32 H 1.09001 * 109.47368 * 119.99875 * 2 1 3 33 33 H 1.09000 * 109.47211 * 67.68903 * 4 3 2 34 34 H 1.08996 * 109.47037 * 187.68827 * 4 3 2 35 35 H 1.09003 * 109.47020 * 67.00961 * 5 4 3 36 36 H 1.09002 * 109.47823 * 187.01427 * 5 4 3 37 37 H 1.09004 * 109.46867 * 307.01825 * 5 4 3 38 38 H 1.09003 * 113.46779 * 24.87582 * 6 3 2 39 39 H 1.09003 * 113.52083 * 254.44388 * 6 3 2 40 40 H 0.96993 * 120.00207 * 359.97438 * 12 10 8 41 41 H 1.07999 * 126.06362 * 0.24687 * 14 13 12 42 42 H 1.07996 * 126.06332 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.47114 * 245.00239 * 17 16 15 44 44 H 1.09002 * 109.47159 * 5.00017 * 17 16 15 45 45 H 0.97006 * 120.00130 * 180.02562 * 21 20 18 46 46 H 1.08998 * 113.47282 * 141.67551 * 27 7 6 47 47 H 1.09002 * 113.46488 * 272.12159 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7731 2.1817 -1.3127 5 6 2.3033 1.3508 -2.4829 6 6 1.6706 2.2406 1.2580 7 7 3.0196 2.8249 1.2205 8 6 3.5916 3.9735 1.6328 9 8 2.9227 4.8181 2.1912 10 6 5.0486 4.2068 1.4025 11 8 5.7178 3.3617 0.8444 12 7 5.6207 5.3552 1.8153 13 6 6.9860 5.5736 1.6000 14 6 7.8756 4.6841 0.9753 15 6 9.0995 5.2587 0.9670 16 7 8.9945 6.4660 1.5618 17 6 10.0850 7.4228 1.7653 18 6 9.7051 8.7523 1.1661 19 1 8.7473 8.8725 0.6817 20 6 10.5803 9.8154 1.2363 21 7 10.2490 10.9755 0.7129 22 14 12.2372 9.6074 2.0735 23 1 13.2441 9.1654 1.0755 24 1 12.6601 10.9032 2.6627 25 1 12.1245 8.5885 3.1478 26 7 7.6608 6.6432 1.9518 27 6 3.4687 1.6070 0.5291 28 1 -0.3634 0.4458 -0.9259 29 1 -0.3633 -1.0249 0.0768 30 1 -0.3633 0.5788 0.8491 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 0.7004 2.3343 -1.4321 34 1 2.2777 3.1476 -1.2949 35 1 1.7143 0.4384 -2.5770 36 1 2.2267 1.9293 -3.4035 37 1 3.3467 1.0926 -2.3017 38 1 1.4928 1.6147 2.1326 39 1 0.8771 2.9696 1.0934 40 1 5.0860 6.0303 2.2616 41 1 7.6263 3.7132 0.5732 42 1 10.0012 4.8282 0.5572 43 1 10.2673 7.5442 2.8331 44 1 10.9889 7.0516 1.2823 45 1 10.8649 11.7234 0.7620 46 1 4.2011 1.7980 -0.2553 47 1 3.7747 0.8106 1.2074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293429853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:24 Heat of formation + Delta-G solvation = 53.767849 kcal Electronic energy + Delta-G solvation = -28288.770295 eV Core-core repulsion = 24282.366772 eV Total energy + Delta-G solvation = -4006.403523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51389 -40.77701 -39.57995 -38.10478 -35.20599 -34.49400 -33.30099 -31.84854 -31.33997 -29.51599 -29.42469 -27.43372 -26.67550 -25.24430 -23.77567 -23.72326 -22.38298 -21.10789 -20.04756 -19.45095 -18.63617 -17.86857 -17.20600 -16.95906 -16.56530 -16.52976 -15.71209 -15.64835 -15.35832 -15.09954 -14.65867 -14.33703 -13.96019 -13.76335 -13.52155 -13.44628 -13.42067 -13.17174 -12.85319 -12.58980 -12.46340 -12.40374 -12.26845 -12.16679 -11.90381 -11.70534 -11.52682 -11.18804 -11.04657 -10.87783 -10.76169 -10.71235 -10.59375 -10.09497 -10.04944 -9.58329 -9.50232 -9.14619 -8.78230 -8.30178 -7.65063 -6.24680 -4.27546 1.20458 1.87198 2.58885 2.91565 3.01150 3.14528 3.21254 3.23498 3.58414 3.61738 3.73427 4.21357 4.22511 4.27739 4.38907 4.52125 4.86899 4.92183 4.94646 5.02297 5.05811 5.10317 5.14947 5.21635 5.27268 5.31126 5.32139 5.44663 5.50101 5.58606 5.60744 5.72990 5.76304 5.77652 5.86146 6.01953 6.03974 6.25257 6.33078 6.39551 6.60721 7.10901 7.17849 7.18759 7.29498 7.59858 7.73411 7.94396 8.30098 8.45641 8.84773 9.29639 10.87917 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.002048 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.582046 B =13666.670901 C =13815.414787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.098 4.098 4 C -0.097 4.097 5 C -0.152 4.152 6 C 0.115 3.885 7 N -0.619 5.619 8 C 0.543 3.457 9 O -0.517 6.517 10 C 0.518 3.482 11 O -0.496 6.496 12 N -0.600 5.600 13 C 0.255 3.745 14 C -0.282 4.282 15 C 0.053 3.947 16 N -0.315 5.315 17 C 0.231 3.769 18 C -0.536 4.536 19 H 0.086 0.914 20 C 0.076 3.924 21 N -0.886 5.886 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.287 5.287 27 C 0.112 3.888 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.424 0.576 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.043 0.957 44 H 0.050 0.950 45 H 0.268 0.732 46 H 0.094 0.906 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.953 -24.926 -2.320 30.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.099 4.099 4 C -0.135 4.135 5 C -0.209 4.209 6 C -0.007 4.007 7 N -0.355 5.355 8 C 0.327 3.673 9 O -0.392 6.392 10 C 0.298 3.702 11 O -0.368 6.368 12 N -0.248 5.248 13 C 0.002 3.998 14 C -0.313 4.313 15 C -0.096 4.096 16 N -0.097 5.097 17 C 0.112 3.888 18 C -0.574 4.574 19 H 0.104 0.896 20 C -0.128 4.128 21 N -0.523 5.523 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.189 1.189 26 N -0.118 5.118 27 C -0.010 4.010 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.261 0.739 41 H 0.180 0.820 42 H 0.189 0.811 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.113 0.887 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.621 -23.419 -1.790 28.774 hybrid contribution 0.792 -0.189 0.336 0.881 sum -15.828 -23.608 -1.453 28.460 Atomic orbital electron populations 1.21761 0.95261 1.01774 1.02170 1.21430 0.96357 0.93669 1.02943 1.22313 0.96241 0.96328 0.95012 1.21235 1.01584 0.98627 0.92010 1.21784 1.01472 1.00014 0.97649 1.23233 0.85084 0.94892 0.97492 1.49115 1.13272 1.15612 1.57456 1.19396 0.87392 0.81378 0.79134 1.90800 1.63980 1.43309 1.41097 1.19808 0.87898 0.82244 0.80295 1.90678 1.63247 1.43378 1.39542 1.42001 1.06668 1.19255 1.56919 1.19010 0.84118 0.94885 1.01797 1.21524 0.91096 1.04157 1.14508 1.22571 0.99852 0.87664 0.99544 1.48697 1.05991 1.13271 1.41695 1.20093 0.81838 0.88436 0.98409 1.21095 1.05763 0.92307 1.38276 0.89602 1.24835 0.98231 0.94857 0.94829 1.69871 1.36658 1.01702 1.44081 0.86902 0.84267 0.78520 0.80382 1.19698 1.20497 1.18866 1.77474 0.89781 1.19300 1.25232 1.23259 0.97051 0.84949 0.95757 0.92426 0.92578 0.92580 0.90624 0.91382 0.91185 0.91524 0.92370 0.92527 0.92293 0.89100 0.89904 0.73882 0.82008 0.81142 0.93877 0.93180 0.92136 0.88746 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.63 37.16 0.36 -0.21 16 2 C -0.11 -0.43 5.16 -26.73 -0.14 -0.56 16 3 C -0.10 -0.58 0.66 -154.13 -0.10 -0.68 16 4 C -0.10 -0.63 5.13 -26.74 -0.14 -0.76 16 5 C -0.15 -0.86 9.18 37.16 0.34 -0.52 16 6 C 0.11 0.84 6.96 -8.51 -0.06 0.78 16 7 N -0.62 -6.52 3.47 -185.91 -0.65 -7.16 16 8 C 0.54 7.51 8.13 -11.63 -0.09 7.42 16 9 O -0.52 -8.24 17.25 5.49 0.09 -8.14 16 10 C 0.52 7.95 7.85 -11.63 -0.09 7.86 16 11 O -0.50 -7.89 12.33 5.46 0.07 -7.82 16 12 N -0.60 -10.17 5.43 -11.58 -0.06 -10.24 16 13 C 0.26 5.12 8.10 -154.55 -1.25 3.87 16 14 C -0.28 -5.28 9.60 -39.82 -0.38 -5.66 16 15 C 0.05 0.99 11.43 -17.24 -0.20 0.79 16 16 N -0.31 -7.05 3.67 -62.57 -0.23 -7.28 16 17 C 0.23 5.42 5.33 -5.20 -0.03 5.39 16 18 C -0.54 -15.11 9.79 -34.44 -0.34 -15.45 16 19 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 20 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 21 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 22 Si 0.87 20.04 27.47 -169.99 -4.67 15.37 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 26 N -0.29 -6.63 12.43 31.41 0.39 -6.24 16 27 C 0.11 0.89 6.65 -8.65 -0.06 0.83 16 28 H 0.06 0.22 7.44 -51.93 -0.39 -0.17 16 29 H 0.06 0.18 8.14 -51.92 -0.42 -0.24 16 30 H 0.06 0.21 7.47 -51.93 -0.39 -0.18 16 31 H 0.08 0.28 6.40 -51.93 -0.33 -0.05 16 32 H 0.07 0.24 7.98 -51.93 -0.41 -0.17 16 33 H 0.07 0.40 7.54 -51.93 -0.39 0.01 16 34 H 0.07 0.58 7.93 -51.93 -0.41 0.16 16 35 H 0.06 0.26 6.88 -51.93 -0.36 -0.10 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.36 7.80 -51.93 -0.40 -0.05 16 38 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 40 H 0.42 6.71 8.29 -40.82 -0.34 6.37 16 41 H 0.16 2.83 5.91 -52.49 -0.31 2.52 16 42 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 43 H 0.04 1.01 7.20 -51.93 -0.37 0.64 16 44 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.09 0.86 7.09 -51.93 -0.37 0.49 16 47 H 0.09 0.60 7.99 -51.93 -0.41 0.18 16 LS Contribution 386.20 15.07 5.82 5.82 Total: -1.00 -33.83 386.20 -7.72 -41.55 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.98 Total: 4.78 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -2.27 Total: 5.17 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.23 Total: -56.72 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.16 Total: -15.96 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.83 -7.72 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293429853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.317 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds