Wall clock time and date at job start Tue Mar 31 2020 17:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46737 * 2 1 4 4 C 1.52999 * 109.46189 * 60.02976 * 3 2 1 5 5 C 1.53040 * 109.46391 * 300.06809 * 3 2 1 6 6 C 1.53190 * 109.31483 * 178.61769 * 5 3 2 7 7 N 1.46931 * 108.77666 * 54.63026 * 6 5 3 8 8 C 1.34772 * 120.62560 * 126.41405 * 7 6 5 9 9 O 1.21371 * 119.99672 * 172.98417 * 8 7 6 10 10 C 1.49308 * 120.00591 * 352.98451 * 8 7 6 11 11 O 1.21411 * 119.99638 * 353.47844 * 10 8 7 12 12 N 1.34771 * 120.00515 * 173.47328 * 10 8 7 13 13 C 1.40291 * 120.00357 * 179.97438 * 12 10 8 14 14 C 1.40721 * 126.10028 * 0.03104 * 13 12 10 15 15 N 1.30880 * 108.37986 * 179.97438 * 14 13 12 16 16 N 1.40063 * 108.42869 * 359.97438 * 15 14 13 17 17 C 1.37294 * 126.04899 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00318 * 179.97438 * 17 16 15 19 19 C 1.39009 * 120.00319 * 359.97438 * 17 16 15 20 20 N 1.31288 * 119.99779 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00425 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47457 * 59.99484 * 21 19 17 23 23 H 1.48500 * 109.47380 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46729 * 299.99588 * 21 19 17 25 25 C 1.35790 * 126.10089 * 179.71382 * 13 12 10 26 26 C 1.46920 * 118.74108 * 306.39644 * 7 6 5 27 27 C 1.53040 * 109.45747 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47392 * 299.99991 * 1 2 3 29 29 H 1.08998 * 109.46977 * 60.00254 * 1 2 3 30 30 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47292 * 240.00323 * 2 1 3 32 32 H 1.08990 * 109.47178 * 119.99985 * 2 1 3 33 33 H 1.09002 * 109.47293 * 59.99151 * 4 3 2 34 34 H 1.08996 * 109.47656 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.47004 * 299.99809 * 4 3 2 36 36 H 1.09002 * 109.49555 * 298.56500 * 5 3 2 37 37 H 1.08997 * 109.49480 * 58.66017 * 5 3 2 38 38 H 1.09005 * 109.58337 * 294.85147 * 6 5 3 39 39 H 1.08994 * 109.58897 * 174.42405 * 6 5 3 40 40 H 0.97005 * 119.99934 * 0.02562 * 12 10 8 41 41 H 1.08002 * 125.80990 * 359.97438 * 14 13 12 42 42 H 0.96995 * 119.99989 * 180.02562 * 20 19 17 43 43 H 1.07996 * 126.25238 * 359.97438 * 25 13 12 44 44 H 1.09001 * 109.58661 * 293.82265 * 26 7 6 45 45 H 1.08997 * 109.70567 * 173.46556 * 26 7 6 46 46 H 1.09002 * 109.49680 * 301.33900 * 27 3 2 47 47 H 1.08999 * 109.50218 * 61.43692 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5304 2.1633 1.2497 5 6 1.5283 2.1643 -1.2488 6 6 2.0120 3.6176 -1.2280 7 7 3.4740 3.6274 -1.0818 8 6 4.2469 4.3026 -1.9553 9 8 5.4389 4.4100 -1.7539 10 6 3.6368 4.9185 -3.1709 11 8 2.4698 4.7125 -3.4352 12 7 4.3813 5.7033 -3.9748 13 6 3.8082 6.2816 -5.1173 14 6 2.4757 6.1300 -5.5437 15 7 2.3144 6.8172 -6.6458 16 7 3.5312 7.4328 -6.9659 17 6 3.7676 8.2393 -8.0515 18 1 4.7482 8.6654 -8.2043 19 6 2.7450 8.5074 -8.9541 20 7 1.5531 7.9891 -8.7687 21 14 3.0669 9.6041 -10.4316 22 1 4.1367 9.0049 -11.2692 23 1 1.8237 9.7315 -11.2338 24 1 3.4963 10.9475 -9.9666 25 6 4.4386 7.0923 -6.0056 26 6 4.0773 2.8875 0.0350 27 6 3.5703 1.4423 0.0006 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8941 1.6492 2.1394 34 1 1.8939 3.1909 1.2502 35 1 0.4404 2.1632 1.2501 36 1 1.9113 1.6661 -2.1394 37 1 0.4385 2.1436 -1.2600 38 1 1.5573 4.1421 -0.3875 39 1 1.7348 4.1084 -2.1608 40 1 5.3138 5.8676 -3.7638 41 1 1.7156 5.5460 -5.0462 42 1 0.8397 8.1759 -9.3986 43 1 5.4702 7.4088 -5.9609 44 1 3.7909 3.3523 0.9784 45 1 5.1629 2.8964 -0.0620 46 1 3.9337 0.9079 0.8785 47 1 3.9345 0.9508 -0.9015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746384526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:59 Heat of formation + Delta-G solvation = 24.602805 kcal Electronic energy + Delta-G solvation = -29105.768800 eV Core-core repulsion = 25098.100586 eV Total energy + Delta-G solvation = -4007.668214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.98266 -39.83854 -38.93765 -37.86057 -35.40490 -34.21302 -33.20429 -31.53531 -30.62886 -30.34975 -28.21347 -27.80465 -26.18026 -25.07547 -23.69920 -23.51218 -21.76245 -21.07050 -20.02241 -19.54891 -18.39567 -17.67877 -17.17330 -16.63714 -15.75979 -15.56237 -15.40640 -15.15493 -14.96813 -14.89270 -14.60213 -14.36661 -14.06040 -13.77813 -13.68934 -13.31779 -13.02750 -12.87290 -12.68030 -12.25408 -12.20441 -12.02506 -11.79800 -11.74498 -11.48737 -11.36587 -11.29001 -11.18909 -10.99338 -10.86534 -10.70675 -10.59624 -10.46416 -10.38753 -10.24532 -9.25456 -8.92593 -8.75447 -8.56079 -8.15876 -6.81738 -6.62614 -4.30200 1.62296 2.55741 2.92897 3.02419 3.06125 3.29474 3.67484 3.69138 3.86202 4.33575 4.41734 4.48370 4.53586 4.57212 4.88497 4.96036 4.96630 5.00920 5.11400 5.15367 5.27516 5.31346 5.36587 5.43543 5.58275 5.60553 5.70868 5.75038 5.76197 5.85221 5.90511 5.97886 5.98892 6.12907 6.17357 6.20090 6.32359 6.33185 6.42311 6.72806 6.85813 7.05686 7.15409 7.21409 7.70946 7.81862 8.08667 8.15664 8.46502 8.66616 9.28275 9.56851 10.33040 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.002342 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.906130 B =11950.377342 C =12808.127968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.065 4.065 4 C -0.147 4.147 5 C -0.119 4.119 6 C 0.044 3.956 7 N -0.580 5.580 8 C 0.515 3.485 9 O -0.533 6.533 10 C 0.487 3.513 11 O -0.512 6.512 12 N -0.578 5.578 13 C -0.072 4.072 14 C -0.025 4.025 15 N -0.260 5.260 16 N -0.137 5.137 17 C -0.322 4.322 18 H 0.118 0.882 19 C 0.047 3.953 20 N -0.767 5.767 21 Si 0.936 3.064 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.266 1.266 25 C -0.077 4.077 26 C 0.107 3.893 27 C -0.122 4.122 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.164 0.836 40 H 0.410 0.590 41 H 0.178 0.822 42 H 0.277 0.723 43 H 0.149 0.851 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 -11.209 16.447 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.065 4.065 4 C -0.204 4.204 5 C -0.157 4.157 6 C -0.076 4.076 7 N -0.313 5.313 8 C 0.298 3.702 9 O -0.410 6.410 10 C 0.269 3.731 11 O -0.392 6.392 12 N -0.219 5.219 13 C -0.178 4.178 14 C -0.201 4.201 15 N -0.091 5.091 16 N 0.096 4.904 17 C -0.454 4.454 18 H 0.135 0.865 19 C -0.171 4.171 20 N -0.393 5.393 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.228 4.228 26 C -0.015 4.015 27 C -0.160 4.160 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.180 0.820 40 H 0.245 0.755 41 H 0.195 0.805 42 H 0.087 0.913 43 H 0.167 0.833 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.382 -10.948 15.340 18.850 hybrid contribution 1.270 0.149 0.325 1.319 sum 0.887 -10.798 15.665 19.047 Atomic orbital electron populations 1.21895 0.95858 1.01383 1.02260 1.21547 0.96055 0.95602 1.01710 1.20602 0.94597 0.95353 0.95931 1.22025 1.01290 1.00490 0.96606 1.21965 1.01084 0.95491 0.97197 1.23394 0.77634 0.98205 1.08374 1.47884 1.08170 1.48640 1.26624 1.20146 0.86427 0.79687 0.83928 1.90717 1.15167 1.59511 1.75645 1.19714 0.86662 0.81864 0.84873 1.90181 1.16043 1.61078 1.71883 1.42183 1.13848 1.43783 1.22102 1.17256 0.95159 1.11415 0.93952 1.24149 0.95010 1.04105 0.96802 1.78271 1.02198 1.13862 1.14782 1.44559 1.05346 1.26634 1.13838 1.19884 0.99321 1.26261 0.99939 0.86467 1.25667 0.94638 0.97367 0.99446 1.70194 1.01025 1.34636 1.33471 0.85868 0.78580 0.79860 0.79725 1.19085 1.20080 1.19079 1.21311 0.96707 1.09262 0.95557 1.21702 0.99504 0.91393 0.88936 1.21965 0.95324 0.96122 1.02607 0.92467 0.92148 0.93121 0.92072 0.92231 0.92898 0.92244 0.92215 0.91486 0.90413 0.91982 0.82037 0.75497 0.80491 0.91273 0.83345 0.91103 0.89112 0.90788 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.21 37.16 0.34 -0.79 16 2 C -0.11 -0.85 4.99 -26.73 -0.13 -0.98 16 3 C -0.06 -0.54 0.54 -154.47 -0.08 -0.63 16 4 C -0.15 -1.12 7.36 37.16 0.27 -0.84 16 5 C -0.12 -1.22 4.59 -26.61 -0.12 -1.34 16 6 C 0.04 0.54 5.80 -3.71 -0.02 0.52 16 7 N -0.58 -7.54 2.97 -173.33 -0.52 -8.05 16 8 C 0.51 8.12 7.74 -11.65 -0.09 8.03 16 9 O -0.53 -9.12 15.94 5.48 0.09 -9.03 16 10 C 0.49 8.68 7.74 -11.65 -0.09 8.59 16 11 O -0.51 -9.74 10.24 5.44 0.06 -9.68 16 12 N -0.58 -10.75 5.45 -10.46 -0.06 -10.81 16 13 C -0.07 -1.63 6.90 -83.92 -0.58 -2.20 16 14 C -0.02 -0.63 10.85 -17.02 -0.18 -0.81 16 15 N -0.26 -7.33 10.39 30.81 0.32 -7.01 16 16 N -0.14 -3.68 3.73 -11.40 -0.04 -3.72 16 17 C -0.32 -8.32 10.25 -14.82 -0.15 -8.47 16 18 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 19 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 20 N -0.77 -20.89 11.81 55.50 0.66 -20.24 16 21 Si 0.94 18.50 29.55 -169.99 -5.02 13.48 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 25 C -0.08 -1.78 11.50 -16.38 -0.19 -1.97 16 26 C 0.11 1.12 5.94 -3.71 -0.02 1.10 16 27 C -0.12 -1.07 4.91 -26.61 -0.13 -1.20 16 28 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 29 H 0.06 0.46 6.40 -51.93 -0.33 0.13 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.49 4.98 -51.93 -0.26 0.23 16 35 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.73 6.36 -51.93 -0.33 0.40 16 38 H 0.06 0.68 6.69 -51.93 -0.35 0.33 16 39 H 0.16 2.39 3.78 -56.78 -0.21 2.18 16 40 H 0.41 6.65 8.31 -40.82 -0.34 6.31 16 41 H 0.18 4.26 5.92 -52.49 -0.31 3.95 16 42 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.15 2.89 8.06 -52.49 -0.42 2.47 16 44 H 0.07 0.65 6.69 -51.93 -0.35 0.31 16 45 H 0.09 1.03 7.06 -51.93 -0.37 0.66 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -30.60 365.44 -6.73 -37.33 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -6.44 Total: 12.16 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.28 Total: 0.08 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.36 Total: -49.84 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.14 Total: -18.71 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.60 -6.73 -37.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746384526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.936 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds