Wall clock time and date at job start Tue Mar 31 2020 17:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46737 * 2 1 4 4 C 1.52999 * 109.46189 * 60.02976 * 3 2 1 5 5 C 1.53040 * 109.46391 * 300.06809 * 3 2 1 6 6 C 1.53190 * 109.31483 * 178.61769 * 5 3 2 7 7 N 1.46931 * 108.77666 * 54.63026 * 6 5 3 8 8 C 1.34772 * 120.62560 * 126.41405 * 7 6 5 9 9 O 1.21371 * 119.99672 * 172.98417 * 8 7 6 10 10 C 1.49308 * 120.00591 * 352.98451 * 8 7 6 11 11 O 1.21411 * 119.99638 * 353.47844 * 10 8 7 12 12 N 1.34771 * 120.00515 * 173.47328 * 10 8 7 13 13 C 1.40291 * 120.00357 * 179.97438 * 12 10 8 14 14 C 1.40721 * 126.10028 * 0.03104 * 13 12 10 15 15 N 1.30880 * 108.37986 * 179.97438 * 14 13 12 16 16 N 1.40063 * 108.42869 * 359.97438 * 15 14 13 17 17 C 1.37294 * 126.04899 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00318 * 179.97438 * 17 16 15 19 19 C 1.39009 * 120.00319 * 359.97438 * 17 16 15 20 20 N 1.31288 * 119.99779 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00425 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47457 * 59.99484 * 21 19 17 23 23 H 1.48500 * 109.47380 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46729 * 299.99588 * 21 19 17 25 25 C 1.35790 * 126.10089 * 179.71382 * 13 12 10 26 26 C 1.46920 * 118.74108 * 306.39644 * 7 6 5 27 27 C 1.53040 * 109.45747 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47392 * 299.99991 * 1 2 3 29 29 H 1.08998 * 109.46977 * 60.00254 * 1 2 3 30 30 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47292 * 240.00323 * 2 1 3 32 32 H 1.08990 * 109.47178 * 119.99985 * 2 1 3 33 33 H 1.09002 * 109.47293 * 59.99151 * 4 3 2 34 34 H 1.08996 * 109.47656 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.47004 * 299.99809 * 4 3 2 36 36 H 1.09002 * 109.49555 * 298.56500 * 5 3 2 37 37 H 1.08997 * 109.49480 * 58.66017 * 5 3 2 38 38 H 1.09005 * 109.58337 * 294.85147 * 6 5 3 39 39 H 1.08994 * 109.58897 * 174.42405 * 6 5 3 40 40 H 0.97005 * 119.99934 * 0.02562 * 12 10 8 41 41 H 1.08002 * 125.80990 * 359.97438 * 14 13 12 42 42 H 0.96995 * 119.99989 * 180.02562 * 20 19 17 43 43 H 1.07996 * 126.25238 * 359.97438 * 25 13 12 44 44 H 1.09001 * 109.58661 * 293.82265 * 26 7 6 45 45 H 1.08997 * 109.70567 * 173.46556 * 26 7 6 46 46 H 1.09002 * 109.49680 * 301.33900 * 27 3 2 47 47 H 1.08999 * 109.50218 * 61.43692 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5304 2.1633 1.2497 5 6 1.5283 2.1643 -1.2488 6 6 2.0120 3.6176 -1.2280 7 7 3.4740 3.6274 -1.0818 8 6 4.2469 4.3026 -1.9553 9 8 5.4389 4.4100 -1.7539 10 6 3.6368 4.9185 -3.1709 11 8 2.4698 4.7125 -3.4352 12 7 4.3813 5.7033 -3.9748 13 6 3.8082 6.2816 -5.1173 14 6 2.4757 6.1300 -5.5437 15 7 2.3144 6.8172 -6.6458 16 7 3.5312 7.4328 -6.9659 17 6 3.7676 8.2393 -8.0515 18 1 4.7482 8.6654 -8.2043 19 6 2.7450 8.5074 -8.9541 20 7 1.5531 7.9891 -8.7687 21 14 3.0669 9.6041 -10.4316 22 1 4.1367 9.0049 -11.2692 23 1 1.8237 9.7315 -11.2338 24 1 3.4963 10.9475 -9.9666 25 6 4.4386 7.0923 -6.0056 26 6 4.0773 2.8875 0.0350 27 6 3.5703 1.4423 0.0006 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8941 1.6492 2.1394 34 1 1.8939 3.1909 1.2502 35 1 0.4404 2.1632 1.2501 36 1 1.9113 1.6661 -2.1394 37 1 0.4385 2.1436 -1.2600 38 1 1.5573 4.1421 -0.3875 39 1 1.7348 4.1084 -2.1608 40 1 5.3138 5.8676 -3.7638 41 1 1.7156 5.5460 -5.0462 42 1 0.8397 8.1759 -9.3986 43 1 5.4702 7.4088 -5.9609 44 1 3.7909 3.3523 0.9784 45 1 5.1629 2.8964 -0.0620 46 1 3.9337 0.9079 0.8785 47 1 3.9345 0.9508 -0.9015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746384526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:58 Heat of formation + Delta-G solvation = 5.284474 kcal Electronic energy + Delta-G solvation = -29106.606506 eV Core-core repulsion = 25098.100586 eV Total energy + Delta-G solvation = -4008.505920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28660 -41.45104 -40.15797 -39.20109 -36.61127 -35.67888 -34.94161 -32.40797 -32.26761 -31.44575 -29.92617 -28.62063 -27.42712 -26.57074 -24.89859 -24.44768 -23.02907 -22.58444 -21.39283 -21.21834 -19.53999 -19.26038 -18.39205 -17.88027 -17.44257 -17.02399 -16.79024 -16.33788 -16.06471 -15.86901 -15.63657 -15.60263 -15.34672 -15.11855 -14.89258 -14.79543 -14.55499 -13.95643 -13.57241 -13.50276 -13.31647 -13.07580 -12.93050 -12.89040 -12.77190 -12.74894 -12.46421 -12.24790 -12.13677 -12.11620 -11.97859 -11.76389 -11.40524 -11.23057 -11.12832 -11.05366 -10.86430 -10.13780 -9.97520 -9.71849 -8.62906 -8.48625 -6.26309 0.24453 1.27197 1.30681 1.42041 1.57145 1.72501 2.02317 2.11687 2.46214 2.52341 2.84869 3.07826 3.38132 3.72467 3.79782 3.82548 4.14276 4.23487 4.33381 4.39568 4.44549 4.50236 4.52055 4.62145 4.70132 4.73103 4.79682 4.85603 4.90355 4.95432 4.98160 5.01940 5.08012 5.17228 5.21813 5.23672 5.26245 5.29537 5.32773 5.34181 5.50623 5.62242 5.66581 5.91925 6.03611 6.21591 6.39327 6.68254 6.76265 7.07368 7.41012 7.63124 8.50264 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024687 B = 0.002342 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.906130 B =11950.377342 C =12808.127968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C -0.060 4.060 4 C -0.144 4.144 5 C -0.115 4.115 6 C 0.044 3.956 7 N -0.570 5.570 8 C 0.518 3.482 9 O -0.548 6.548 10 C 0.488 3.512 11 O -0.524 6.524 12 N -0.579 5.579 13 C -0.057 4.057 14 C -0.045 4.045 15 N -0.307 5.307 16 N -0.163 5.163 17 C -0.354 4.354 18 H 0.141 0.859 19 C -0.004 4.004 20 N -0.820 5.820 21 Si 1.019 2.981 22 H -0.254 1.254 23 H -0.277 1.277 24 H -0.254 1.254 25 C -0.075 4.075 26 C 0.103 3.897 27 C -0.117 4.117 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.137 0.863 40 H 0.422 0.578 41 H 0.179 0.821 42 H 0.278 0.722 43 H 0.186 0.814 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -11.679 18.182 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C -0.061 4.061 4 C -0.201 4.201 5 C -0.153 4.153 6 C -0.077 4.077 7 N -0.302 5.302 8 C 0.300 3.700 9 O -0.426 6.426 10 C 0.271 3.729 11 O -0.404 6.404 12 N -0.223 5.223 13 C -0.164 4.164 14 C -0.220 4.220 15 N -0.139 5.139 16 N 0.069 4.931 17 C -0.485 4.485 18 H 0.158 0.842 19 C -0.217 4.217 20 N -0.447 5.447 21 Si 0.837 3.163 22 H -0.178 1.178 23 H -0.202 1.202 24 H -0.178 1.178 25 C -0.226 4.226 26 C -0.018 4.018 27 C -0.155 4.155 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.153 0.847 40 H 0.260 0.740 41 H 0.196 0.804 42 H 0.088 0.912 43 H 0.203 0.797 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.118 0.882 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.736 -11.451 17.129 20.617 hybrid contribution 0.906 0.155 -0.006 0.919 sum 1.642 -11.296 17.123 20.579 Atomic orbital electron populations 1.21892 0.95581 1.01745 1.02162 1.21516 0.96261 0.94832 1.01986 1.20574 0.94316 0.95860 0.95307 1.22001 1.01604 1.00076 0.96453 1.21929 1.01588 0.94137 0.97679 1.23306 0.77187 0.99540 1.07626 1.48014 1.08454 1.47420 1.26326 1.19680 0.86317 0.80305 0.83698 1.90714 1.15498 1.60487 1.75933 1.20292 0.86427 0.80948 0.85237 1.90238 1.16745 1.61014 1.72356 1.42134 1.14556 1.44313 1.21298 1.17282 0.94146 1.10336 0.94612 1.24283 0.96436 1.04485 0.96819 1.78165 1.04095 1.15350 1.16262 1.44826 1.05507 1.27650 1.15085 1.20603 1.00741 1.26822 1.00312 0.84193 1.26866 0.93951 0.98415 1.02418 1.70365 1.02363 1.36916 1.35101 0.84656 0.78472 0.77864 0.75270 1.17836 1.20175 1.17772 1.21995 0.97892 1.08286 0.94462 1.21959 0.99077 0.92268 0.88461 1.21962 0.95489 0.94884 1.03200 0.91722 0.93061 0.92606 0.92903 0.90853 0.91400 0.92820 0.91812 0.93343 0.89551 0.90212 0.84659 0.74010 0.80428 0.91222 0.79652 0.89036 0.89801 0.88230 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.21 71.98 0.66 -1.27 16 2 C -0.11 -1.39 4.99 30.60 0.15 -1.24 16 3 C -0.06 -0.87 0.54 -52.15 -0.03 -0.90 16 4 C -0.14 -1.73 7.36 71.98 0.53 -1.20 16 5 C -0.12 -2.25 4.59 30.67 0.14 -2.11 16 6 C 0.04 1.02 5.80 86.36 0.50 1.52 16 7 N -0.57 -14.15 2.97 -820.66 -2.44 -16.59 16 8 C 0.52 15.99 7.74 87.23 0.67 16.67 16 9 O -0.55 -18.17 15.94 -3.31 -0.05 -18.22 16 10 C 0.49 17.45 7.74 87.23 0.68 18.13 16 11 O -0.52 -20.37 10.24 -3.44 -0.04 -20.41 16 12 N -0.58 -21.43 5.45 -305.33 -1.66 -23.09 16 13 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 14 C -0.04 -2.34 10.85 85.44 0.93 -1.41 16 15 N -0.31 -18.00 10.39 -56.43 -0.59 -18.59 16 16 N -0.16 -8.91 3.73 -189.98 -0.71 -9.62 16 17 C -0.35 -18.46 10.25 84.02 0.86 -17.60 16 18 H 0.14 6.34 7.83 -2.91 -0.02 6.31 16 19 C 0.00 -0.22 5.50 84.96 0.47 0.25 16 20 N -0.82 -46.31 11.81 21.67 0.26 -46.05 16 21 Si 1.02 37.92 29.55 68.60 2.03 39.95 16 22 H -0.25 -8.89 7.11 99.48 0.71 -8.19 16 23 H -0.28 -10.19 7.11 99.48 0.71 -9.49 16 24 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 25 C -0.08 -3.49 11.50 83.41 0.96 -2.53 16 26 C 0.10 1.93 5.94 86.36 0.51 2.45 16 27 C -0.12 -1.77 4.91 30.67 0.15 -1.62 16 28 H 0.06 0.71 6.43 -2.39 -0.02 0.69 16 29 H 0.05 0.72 6.40 -2.39 -0.02 0.71 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.71 4.98 -2.39 -0.01 0.70 16 35 H 0.06 0.73 6.43 -2.39 -0.02 0.72 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.54 6.36 -2.39 -0.02 1.52 16 38 H 0.08 1.61 6.69 -2.38 -0.02 1.60 16 39 H 0.14 4.05 3.78 -79.14 -0.30 3.75 16 40 H 0.42 13.34 8.31 -92.70 -0.77 12.57 16 41 H 0.18 8.98 5.92 -2.91 -0.02 8.97 16 42 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 44 H 0.09 1.40 6.69 -2.39 -0.02 1.38 16 45 H 0.08 1.74 7.06 -2.39 -0.02 1.73 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -68.83 365.44 4.20 -64.63 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -0.04 Total: 41.22 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 7.45 Total: 6.78 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -5.14 Total: -113.94 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.09 Total: -38.63 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -68.83 4.20 -64.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746384526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.911 kcal (2) G-P(sol) polarization free energy of solvation -68.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds