Wall clock time and date at job start Tue Mar 31 2020 19:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 C 1.52998 * 109.47556 * 119.99887 * 2 1 3 5 5 C 1.53035 * 109.46276 * 179.97438 * 4 2 1 6 6 C 1.53189 * 109.31436 * 178.61386 * 5 4 2 7 7 N 1.46930 * 108.77201 * 54.63767 * 6 5 4 8 8 C 1.34780 * 120.62976 * 126.41159 * 7 6 5 9 9 O 1.21363 * 120.00010 * 351.33011 * 8 7 6 10 10 C 1.49307 * 120.00071 * 171.32999 * 8 7 6 11 11 O 1.21405 * 119.99843 * 353.21816 * 10 8 7 12 12 N 1.34776 * 120.00181 * 173.22737 * 10 8 7 13 13 C 1.40293 * 119.99969 * 179.97438 * 12 10 8 14 14 C 1.40721 * 126.10180 * 0.02562 * 13 12 10 15 15 N 1.30878 * 108.37778 * 180.02562 * 14 13 12 16 16 N 1.40064 * 108.43169 * 359.97438 * 15 14 13 17 17 C 1.37296 * 126.04927 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99471 * 179.97438 * 17 16 15 19 19 C 1.39011 * 120.00459 * 359.97438 * 17 16 15 20 20 N 1.31279 * 119.99744 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00036 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47263 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47239 * 119.99803 * 21 19 17 24 24 H 1.48499 * 109.47209 * 239.99806 * 21 19 17 25 25 C 1.35789 * 126.09655 * 179.71150 * 13 12 10 26 26 C 1.46924 * 118.74141 * 306.39073 * 7 6 5 27 27 C 1.53052 * 109.45555 * 59.93219 * 4 2 1 28 28 H 1.09003 * 109.47233 * 300.00025 * 1 2 3 29 29 H 1.09001 * 109.47104 * 59.99906 * 1 2 3 30 30 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47146 * 240.00680 * 2 1 3 32 32 H 1.08997 * 109.47720 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46970 * 300.00552 * 3 2 1 34 34 H 1.09003 * 109.47053 * 59.99864 * 3 2 1 35 35 H 1.08998 * 109.44975 * 299.96931 * 4 2 1 36 36 H 1.09004 * 109.49515 * 58.66487 * 5 4 2 37 37 H 1.08996 * 109.50080 * 298.56846 * 5 4 2 38 38 H 1.08998 * 109.58752 * 174.42329 * 6 5 4 39 39 H 1.08996 * 109.58945 * 294.71208 * 6 5 4 40 40 H 0.97002 * 119.99499 * 359.97438 * 12 10 8 41 41 H 1.07999 * 125.80970 * 359.97438 * 14 13 12 42 42 H 0.96996 * 119.99677 * 180.02562 * 20 19 17 43 43 H 1.08004 * 126.25524 * 359.96424 * 25 13 12 44 44 H 1.08999 * 109.58765 * 173.39375 * 26 7 6 45 45 H 1.09003 * 109.58659 * 293.82204 * 26 7 6 46 46 H 1.09000 * 109.49269 * 61.43598 * 27 4 2 47 47 H 1.09000 * 109.52356 * 301.35478 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5704 -0.7216 1.2486 6 6 4.0774 -1.4138 2.5176 7 7 3.4737 -2.7508 2.6003 8 6 4.2464 -3.8452 2.7481 9 8 5.4530 -3.7530 2.6568 10 6 3.6178 -5.1711 3.0243 11 8 2.4250 -5.2447 3.2378 12 7 4.3747 -6.2862 3.0367 13 6 3.7841 -7.5319 3.2968 14 6 2.4214 -7.7649 3.5595 15 7 2.2519 -9.0481 3.7529 16 7 3.4932 -9.6835 3.6216 17 6 3.7298 -11.0295 3.7529 18 1 4.7308 -11.4163 3.6306 19 6 2.6812 -11.8946 4.0434 20 7 1.4644 -11.4245 4.1916 21 14 3.0031 -13.7259 4.2213 22 1 4.4473 -13.9977 4.0084 23 1 2.6128 -14.1670 5.5846 24 1 2.2051 -14.4691 3.2133 25 6 4.4245 -8.7287 3.3339 26 6 2.0118 -2.8721 2.5191 27 6 1.5284 -2.1636 1.2498 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6771 -0.2068 2.1389 36 1 3.9345 0.3056 1.2243 37 1 3.9338 -1.2576 0.3719 38 1 5.1628 -1.5050 2.4754 39 1 3.7937 -0.8279 3.3918 40 1 5.3277 -6.2274 2.8659 41 1 1.6474 -7.0126 3.5962 42 1 0.7328 -12.0280 4.3946 43 1 5.4789 -8.8943 3.1685 44 1 1.7342 -3.9253 2.4778 45 1 1.5574 -2.4063 3.3936 46 1 1.9114 -2.6858 0.3729 47 1 0.4386 -2.1636 1.2261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746423112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:58 Heat of formation + Delta-G solvation = 15.188188 kcal Electronic energy + Delta-G solvation = -28727.272031 eV Core-core repulsion = 24719.195568 eV Total energy + Delta-G solvation = -4008.076463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.85262 -39.72933 -38.72303 -37.81600 -35.75127 -34.30454 -33.20680 -31.53412 -31.25662 -30.34164 -28.12190 -27.51141 -26.19367 -25.03784 -23.72326 -22.94559 -21.38262 -20.96758 -20.15244 -19.58357 -19.39236 -17.70313 -17.32694 -16.62504 -15.88140 -15.55746 -15.29028 -15.02224 -14.89278 -14.82159 -14.38340 -14.27999 -14.05182 -13.90286 -13.70200 -13.22843 -13.10057 -12.91874 -12.77588 -12.49621 -12.33236 -12.03147 -11.80392 -11.74274 -11.50757 -11.35293 -11.30193 -11.20735 -11.11304 -10.83452 -10.75044 -10.54495 -10.50113 -10.39975 -10.22670 -9.26028 -8.92379 -8.78913 -8.68872 -8.15120 -6.80368 -6.62477 -4.29656 1.63465 2.54869 2.91089 3.02939 3.08715 3.29177 3.66774 3.69574 3.85971 4.33884 4.39987 4.45455 4.51463 4.57650 4.79835 4.90483 4.96375 4.98982 5.10598 5.12109 5.20145 5.30600 5.34862 5.36633 5.55388 5.58392 5.63749 5.67089 5.70707 5.79831 5.86790 5.89912 6.00876 6.07604 6.09694 6.18479 6.28020 6.33511 6.40762 6.73868 6.86948 7.00721 7.14979 7.18460 7.71171 7.82318 8.09188 8.16225 8.46664 8.67271 9.29084 9.57655 10.33363 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.002189 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.600344 B =12788.305297 C =13550.580705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.084 4.084 5 C -0.129 4.129 6 C 0.107 3.893 7 N -0.583 5.583 8 C 0.516 3.484 9 O -0.533 6.533 10 C 0.485 3.515 11 O -0.515 6.515 12 N -0.580 5.580 13 C -0.071 4.071 14 C -0.025 4.025 15 N -0.260 5.260 16 N -0.138 5.138 17 C -0.321 4.321 18 H 0.119 0.881 19 C 0.046 3.954 20 N -0.767 5.767 21 Si 0.936 3.064 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.273 1.273 25 C -0.077 4.077 26 C 0.068 3.932 27 C -0.132 4.132 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.409 0.591 41 H 0.178 0.822 42 H 0.275 0.725 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 20.064 -6.165 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.103 4.103 5 C -0.167 4.167 6 C -0.015 4.015 7 N -0.317 5.317 8 C 0.299 3.701 9 O -0.409 6.409 10 C 0.267 3.733 11 O -0.394 6.394 12 N -0.222 5.222 13 C -0.177 4.177 14 C -0.201 4.201 15 N -0.091 5.091 16 N 0.095 4.905 17 C -0.454 4.454 18 H 0.136 0.864 19 C -0.172 4.172 20 N -0.393 5.393 21 Si 0.760 3.240 22 H -0.186 1.186 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.228 4.228 26 C -0.053 4.053 27 C -0.170 4.170 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.244 0.756 41 H 0.195 0.805 42 H 0.086 0.914 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.008 19.051 -5.740 19.897 hybrid contribution 1.255 0.097 -0.205 1.275 sum 1.263 19.149 -5.945 20.090 Atomic orbital electron populations 1.21901 0.95212 1.02082 1.01526 1.21139 0.95803 0.95985 0.98140 1.21900 1.01135 0.96039 1.01563 1.21242 0.94871 0.96003 0.98170 1.22021 0.95819 1.00798 0.98092 1.21690 0.99752 0.82142 0.97896 1.47896 1.08193 1.05537 1.70080 1.20210 0.86682 0.85615 0.77606 1.90712 1.14166 1.86009 1.50061 1.19686 0.87002 0.84807 0.81800 1.90373 1.14451 1.84852 1.49755 1.42185 1.11488 1.04311 1.64175 1.17258 0.93763 0.83231 1.23411 1.24148 0.94451 0.95006 1.06517 1.78266 1.01298 1.04076 1.25470 1.44575 1.03845 1.05300 1.36764 1.19978 0.96948 0.78023 1.50402 0.86380 1.25672 0.94613 1.01453 0.95434 1.70212 0.99469 1.35974 1.33670 0.85736 0.79388 0.80322 0.78568 1.18612 1.19861 1.19852 1.21313 0.95638 0.88032 1.17840 1.22937 0.77737 1.07497 0.97160 1.22085 1.01264 0.95021 0.98619 0.92732 0.92970 0.92134 0.91302 0.92428 0.92956 0.92757 0.91016 0.90469 0.91429 0.88938 0.91278 0.75556 0.80508 0.91391 0.83352 0.83631 0.91590 0.91650 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.84 37.16 0.33 -0.70 16 2 C -0.09 -0.66 2.51 -90.62 -0.23 -0.89 16 3 C -0.15 -0.93 8.84 37.16 0.33 -0.60 16 4 C -0.08 -0.68 1.74 -90.58 -0.16 -0.83 16 5 C -0.13 -1.08 5.04 -26.62 -0.13 -1.21 16 6 C 0.11 1.10 6.44 -3.71 -0.02 1.08 16 7 N -0.58 -7.56 2.97 -173.33 -0.52 -8.07 16 8 C 0.52 8.15 7.73 -11.65 -0.09 8.06 16 9 O -0.53 -9.10 15.93 5.49 0.09 -9.01 16 10 C 0.49 8.72 7.70 -11.65 -0.09 8.63 16 11 O -0.51 -9.93 10.33 5.45 0.06 -9.87 16 12 N -0.58 -10.87 5.45 -10.46 -0.06 -10.93 16 13 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 14 C -0.03 -0.65 10.85 -17.02 -0.18 -0.83 16 15 N -0.26 -7.37 10.39 30.81 0.32 -7.05 16 16 N -0.14 -3.72 3.73 -11.40 -0.04 -3.76 16 17 C -0.32 -8.34 10.25 -14.82 -0.15 -8.49 16 18 H 0.12 2.74 7.83 -52.48 -0.41 2.33 16 19 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 20 N -0.77 -20.96 11.81 55.50 0.66 -20.31 16 21 Si 0.94 18.58 29.55 -169.99 -5.02 13.56 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 C -0.08 -1.79 11.50 -16.38 -0.19 -1.97 16 26 C 0.07 0.81 5.98 -3.71 -0.02 0.79 16 27 C -0.13 -1.27 5.04 -26.60 -0.13 -1.40 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.43 6.40 -51.93 -0.33 0.10 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.35 6.40 -51.93 -0.33 0.01 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.52 6.36 -51.93 -0.33 0.19 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.03 7.01 -51.93 -0.36 0.67 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.41 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.18 4.30 5.92 -52.49 -0.31 3.99 16 42 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.15 2.90 8.06 -52.48 -0.42 2.48 16 44 H 0.15 2.13 4.32 -54.79 -0.24 1.89 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.69 6.36 -51.93 -0.33 0.36 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -30.97 373.01 -7.09 -38.06 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.77 Total: 11.26 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.42 Total: 0.50 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.36 Total: -50.12 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.14 Total: -18.88 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.97 -7.09 -38.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746423112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.253 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds