Wall clock time and date at job start Tue Mar 31 2020 19:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 C 1.52998 * 109.47556 * 119.99887 * 2 1 3 5 5 C 1.53035 * 109.46276 * 179.97438 * 4 2 1 6 6 C 1.53189 * 109.31436 * 178.61386 * 5 4 2 7 7 N 1.46930 * 108.77201 * 54.63767 * 6 5 4 8 8 C 1.34780 * 120.62976 * 126.41159 * 7 6 5 9 9 O 1.21363 * 120.00010 * 351.33011 * 8 7 6 10 10 C 1.49307 * 120.00071 * 171.32999 * 8 7 6 11 11 O 1.21405 * 119.99843 * 353.21816 * 10 8 7 12 12 N 1.34776 * 120.00181 * 173.22737 * 10 8 7 13 13 C 1.40293 * 119.99969 * 179.97438 * 12 10 8 14 14 C 1.40721 * 126.10180 * 0.02562 * 13 12 10 15 15 N 1.30878 * 108.37778 * 180.02562 * 14 13 12 16 16 N 1.40064 * 108.43169 * 359.97438 * 15 14 13 17 17 C 1.37296 * 126.04927 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99471 * 179.97438 * 17 16 15 19 19 C 1.39011 * 120.00459 * 359.97438 * 17 16 15 20 20 N 1.31279 * 119.99744 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00036 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47263 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47239 * 119.99803 * 21 19 17 24 24 H 1.48499 * 109.47209 * 239.99806 * 21 19 17 25 25 C 1.35789 * 126.09655 * 179.71150 * 13 12 10 26 26 C 1.46924 * 118.74141 * 306.39073 * 7 6 5 27 27 C 1.53052 * 109.45555 * 59.93219 * 4 2 1 28 28 H 1.09003 * 109.47233 * 300.00025 * 1 2 3 29 29 H 1.09001 * 109.47104 * 59.99906 * 1 2 3 30 30 H 1.08999 * 109.47035 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47146 * 240.00680 * 2 1 3 32 32 H 1.08997 * 109.47720 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46970 * 300.00552 * 3 2 1 34 34 H 1.09003 * 109.47053 * 59.99864 * 3 2 1 35 35 H 1.08998 * 109.44975 * 299.96931 * 4 2 1 36 36 H 1.09004 * 109.49515 * 58.66487 * 5 4 2 37 37 H 1.08996 * 109.50080 * 298.56846 * 5 4 2 38 38 H 1.08998 * 109.58752 * 174.42329 * 6 5 4 39 39 H 1.08996 * 109.58945 * 294.71208 * 6 5 4 40 40 H 0.97002 * 119.99499 * 359.97438 * 12 10 8 41 41 H 1.07999 * 125.80970 * 359.97438 * 14 13 12 42 42 H 0.96996 * 119.99677 * 180.02562 * 20 19 17 43 43 H 1.08004 * 126.25524 * 359.96424 * 25 13 12 44 44 H 1.08999 * 109.58765 * 173.39375 * 26 7 6 45 45 H 1.09003 * 109.58659 * 293.82204 * 26 7 6 46 46 H 1.09000 * 109.49269 * 61.43598 * 27 4 2 47 47 H 1.09000 * 109.52356 * 301.35478 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5704 -0.7216 1.2486 6 6 4.0774 -1.4138 2.5176 7 7 3.4737 -2.7508 2.6003 8 6 4.2464 -3.8452 2.7481 9 8 5.4530 -3.7530 2.6568 10 6 3.6178 -5.1711 3.0243 11 8 2.4250 -5.2447 3.2378 12 7 4.3747 -6.2862 3.0367 13 6 3.7841 -7.5319 3.2968 14 6 2.4214 -7.7649 3.5595 15 7 2.2519 -9.0481 3.7529 16 7 3.4932 -9.6835 3.6216 17 6 3.7298 -11.0295 3.7529 18 1 4.7308 -11.4163 3.6306 19 6 2.6812 -11.8946 4.0434 20 7 1.4644 -11.4245 4.1916 21 14 3.0031 -13.7259 4.2213 22 1 4.4473 -13.9977 4.0084 23 1 2.6128 -14.1670 5.5846 24 1 2.2051 -14.4691 3.2133 25 6 4.4245 -8.7287 3.3339 26 6 2.0118 -2.8721 2.5191 27 6 1.5284 -2.1636 1.2498 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6771 -0.2068 2.1389 36 1 3.9345 0.3056 1.2243 37 1 3.9338 -1.2576 0.3719 38 1 5.1628 -1.5050 2.4754 39 1 3.7937 -0.8279 3.3918 40 1 5.3277 -6.2274 2.8659 41 1 1.6474 -7.0126 3.5962 42 1 0.7328 -12.0280 4.3946 43 1 5.4789 -8.8943 3.1685 44 1 1.7342 -3.9253 2.4778 45 1 1.5574 -2.4063 3.3936 46 1 1.9114 -2.6858 0.3729 47 1 0.4386 -2.1636 1.2261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746423112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:57 Heat of formation + Delta-G solvation = -4.045489 kcal Electronic energy + Delta-G solvation = -28728.106066 eV Core-core repulsion = 24719.195568 eV Total energy + Delta-G solvation = -4008.910498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.22023 -41.38224 -39.89762 -39.08325 -36.78204 -35.85199 -34.97494 -32.40328 -32.26307 -32.10175 -29.90943 -28.08718 -27.50228 -26.59245 -24.88191 -23.91675 -22.93367 -22.26984 -21.33666 -20.98767 -20.48609 -19.41377 -18.64503 -17.91798 -17.45415 -17.14059 -16.81534 -16.28597 -15.84653 -15.70004 -15.58680 -15.41176 -15.23906 -15.04955 -14.88478 -14.82641 -14.63427 -13.89036 -13.76512 -13.51915 -13.34096 -13.09500 -13.04165 -12.94343 -12.85321 -12.72012 -12.47624 -12.24512 -12.15283 -12.02956 -11.90693 -11.82494 -11.37459 -11.26444 -11.08129 -11.06919 -10.86726 -10.14243 -10.08978 -9.79277 -8.62263 -8.49218 -6.26549 0.25428 1.27217 1.28276 1.41974 1.59883 1.71269 2.01623 2.10675 2.45583 2.52399 2.84788 3.07389 3.40174 3.73096 3.80974 3.82504 4.12587 4.20791 4.32464 4.39387 4.42437 4.51870 4.53709 4.55780 4.60669 4.81712 4.85064 4.92391 4.94151 4.97654 4.98152 4.99524 5.06216 5.09852 5.13649 5.14602 5.24924 5.30506 5.34679 5.40945 5.49206 5.58949 5.62876 5.91647 6.00778 6.21225 6.39528 6.67209 6.75858 7.06368 7.41019 7.62996 8.50169 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.002189 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.600344 B =12788.305297 C =13550.580705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.079 4.079 5 C -0.122 4.122 6 C 0.103 3.897 7 N -0.574 5.574 8 C 0.519 3.481 9 O -0.547 6.547 10 C 0.486 3.514 11 O -0.527 6.527 12 N -0.581 5.581 13 C -0.057 4.057 14 C -0.045 4.045 15 N -0.307 5.307 16 N -0.164 5.164 17 C -0.352 4.352 18 H 0.141 0.859 19 C -0.005 4.005 20 N -0.820 5.820 21 Si 1.019 2.981 22 H -0.242 1.242 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.075 4.075 26 C 0.067 3.933 27 C -0.126 4.126 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.422 0.578 41 H 0.179 0.821 42 H 0.278 0.722 43 H 0.187 0.813 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.505 21.594 -6.584 22.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.097 4.097 5 C -0.160 4.160 6 C -0.018 4.018 7 N -0.306 5.306 8 C 0.301 3.699 9 O -0.425 6.425 10 C 0.269 3.731 11 O -0.407 6.407 12 N -0.225 5.225 13 C -0.163 4.163 14 C -0.221 4.221 15 N -0.139 5.139 16 N 0.068 4.932 17 C -0.483 4.483 18 H 0.158 0.842 19 C -0.218 4.218 20 N -0.448 5.448 21 Si 0.838 3.162 22 H -0.165 1.165 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.226 4.226 26 C -0.054 4.054 27 C -0.164 4.164 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.259 0.741 41 H 0.195 0.805 42 H 0.088 0.912 43 H 0.204 0.796 44 H 0.137 0.863 45 H 0.097 0.903 46 H 0.071 0.929 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.251 20.645 -6.176 21.585 hybrid contribution 0.848 -0.136 -0.114 0.867 sum 2.099 20.509 -6.289 21.554 Atomic orbital electron populations 1.21900 0.94997 1.01837 1.01996 1.21098 0.95960 0.96519 0.97209 1.21881 1.01371 0.95161 1.02013 1.21209 0.94586 0.94793 0.99136 1.21999 0.95928 1.01677 0.96429 1.21966 0.99336 0.80647 0.99863 1.48044 1.08529 1.05895 1.68164 1.19719 0.86543 0.85256 0.78392 1.90710 1.14467 1.86005 1.51364 1.20270 0.86815 0.85577 0.80444 1.90407 1.15250 1.85462 1.49550 1.42133 1.12187 1.03222 1.64986 1.17288 0.92805 0.84766 1.21436 1.24275 0.95898 0.94510 1.07402 1.78160 1.03212 1.05366 1.27134 1.44841 1.03952 1.06197 1.38162 1.20681 0.98360 0.78169 1.51136 0.84165 1.26874 0.93958 1.06704 0.94216 1.70375 1.00794 1.38032 1.35579 0.84530 0.80193 0.73227 0.78244 1.16471 1.19738 1.19692 1.21996 0.96952 0.87509 1.16148 1.22883 0.77221 1.06292 0.99040 1.22038 1.01879 0.95870 0.96608 0.92269 0.92542 0.92739 0.92068 0.92021 0.92644 0.92239 0.90043 0.88067 0.92563 0.89635 0.89185 0.74052 0.80478 0.91238 0.79648 0.86324 0.90297 0.92867 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.84 71.98 0.64 -1.13 16 2 C -0.09 -1.08 2.51 -10.79 -0.03 -1.11 16 3 C -0.15 -1.42 8.84 71.98 0.64 -0.79 16 4 C -0.08 -1.07 1.74 -10.77 -0.02 -1.09 16 5 C -0.12 -1.73 5.04 30.67 0.15 -1.58 16 6 C 0.10 1.87 6.44 86.36 0.56 2.43 16 7 N -0.57 -14.13 2.97 -820.65 -2.44 -16.57 16 8 C 0.52 16.00 7.73 87.22 0.67 16.67 16 9 O -0.55 -18.11 15.93 -3.29 -0.05 -18.16 16 10 C 0.49 17.47 7.70 87.22 0.67 18.15 16 11 O -0.53 -20.69 10.33 -3.42 -0.04 -20.72 16 12 N -0.58 -21.62 5.45 -305.33 -1.66 -23.29 16 13 C -0.06 -2.60 6.90 37.82 0.26 -2.34 16 14 C -0.05 -2.38 10.85 85.44 0.93 -1.45 16 15 N -0.31 -18.06 10.39 -56.43 -0.59 -18.65 16 16 N -0.16 -8.97 3.73 -189.97 -0.71 -9.68 16 17 C -0.35 -18.43 10.25 84.02 0.86 -17.57 16 18 H 0.14 6.39 7.83 -2.91 -0.02 6.37 16 19 C -0.01 -0.28 5.50 84.96 0.47 0.19 16 20 N -0.82 -46.44 11.81 21.67 0.26 -46.18 16 21 Si 1.02 38.07 29.55 68.60 2.03 40.10 16 22 H -0.24 -8.13 7.11 99.48 0.71 -7.43 16 23 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 25 C -0.08 -3.48 11.50 83.41 0.96 -2.53 16 26 C 0.07 1.53 5.98 86.36 0.52 2.05 16 27 C -0.13 -2.26 5.04 30.68 0.15 -2.10 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.70 6.40 -2.39 -0.02 0.68 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.55 6.40 -2.39 -0.02 0.53 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.01 6.36 -2.39 -0.02 0.99 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 1.74 7.01 -2.39 -0.02 1.72 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.42 13.41 8.31 -92.71 -0.77 12.64 16 41 H 0.18 9.02 5.92 -2.91 -0.02 9.00 16 42 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.19 6.92 8.06 -2.91 -0.02 6.90 16 44 H 0.12 3.49 4.32 -47.61 -0.21 3.29 16 45 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 46 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.09 1.44 6.36 -2.39 -0.02 1.42 16 Total: -1.00 -69.47 373.01 4.27 -65.20 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: 0.04 Total: 40.15 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 7.43 Total: 7.81 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -5.14 Total: -114.37 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.09 Total: -38.88 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -69.47 4.27 -65.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746423112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.155 kcal (2) G-P(sol) polarization free energy of solvation -69.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds