Wall clock time and date at job start Tue Mar 31 2020 17:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 C 1.53000 * 110.30775 * 301.44566 * 3 2 1 5 5 C 1.53000 * 109.47197 * 300.68553 * 4 3 2 6 6 C 1.54284 * 110.34325 * 63.62491 * 3 2 1 7 7 C 1.54389 * 104.96134 * 118.87019 * 6 3 2 8 8 N 1.48141 * 104.61724 * 336.13154 * 7 6 3 9 9 C 1.34783 * 127.83987 * 219.58329 * 8 7 6 10 10 O 1.21363 * 119.99908 * 180.02562 * 9 8 7 11 11 C 1.49308 * 119.99623 * 0.03027 * 9 8 7 12 12 O 1.21399 * 120.00483 * 359.97438 * 11 9 8 13 13 N 1.34782 * 119.99595 * 179.97438 * 11 9 8 14 14 C 1.40297 * 119.99878 * 179.97438 * 13 11 9 15 15 C 1.40728 * 126.09832 * 0.02562 * 14 13 11 16 16 N 1.30875 * 108.37300 * 179.71648 * 15 14 13 17 17 N 1.40063 * 108.43634 * 0.44037 * 16 15 14 18 18 C 1.37295 * 126.05754 * 179.81554 * 17 16 15 19 19 H 1.07994 * 120.00299 * 179.69366 * 18 17 16 20 20 C 1.39010 * 119.99460 * 359.41779 * 18 17 16 21 21 N 1.31278 * 120.00164 * 0.27190 * 20 18 17 22 22 Si 1.86804 * 119.99735 * 180.27691 * 20 18 17 23 23 H 1.48502 * 109.47280 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47164 * 119.99852 * 22 20 18 25 25 H 1.48498 * 109.46988 * 240.00032 * 22 20 18 26 26 C 1.35778 * 126.09888 * 180.02562 * 14 13 11 27 27 C 1.48149 * 104.32409 * 39.84774 * 8 7 6 28 28 H 1.09001 * 109.47260 * 306.51551 * 1 2 3 29 29 H 1.08998 * 109.46793 * 66.51938 * 1 2 3 30 30 H 1.08998 * 109.46899 * 186.51438 * 1 2 3 31 31 H 1.08998 * 109.47392 * 240.00183 * 2 1 3 32 32 H 1.08997 * 109.47418 * 119.99995 * 2 1 3 33 33 H 1.08998 * 109.46562 * 60.68603 * 4 3 2 34 34 H 1.09004 * 109.47132 * 180.67838 * 4 3 2 35 35 H 1.08996 * 109.46821 * 305.27613 * 5 4 3 36 36 H 1.09000 * 109.47185 * 65.27515 * 5 4 3 37 37 H 1.08997 * 109.47222 * 185.27838 * 5 4 3 38 38 H 1.08997 * 110.34023 * 0.02562 * 6 3 2 39 39 H 1.08996 * 110.43111 * 237.78806 * 6 3 2 40 40 H 1.09006 * 110.40636 * 217.35015 * 7 6 3 41 41 H 1.08994 * 110.50785 * 94.96870 * 7 6 3 42 42 H 0.97000 * 119.99889 * 359.97438 * 13 11 9 43 43 H 1.08000 * 125.81081 * 359.95806 * 15 14 13 44 44 H 0.97006 * 119.99603 * 179.97438 * 21 20 18 45 45 H 1.07996 * 126.25432 * 0.02562 * 26 14 13 46 46 H 1.08997 * 110.40307 * 78.93703 * 27 8 7 47 47 H 1.08996 * 110.40724 * 201.36986 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5112 2.1927 -1.2242 5 6 1.9769 1.4835 -2.4974 6 6 1.6128 2.1624 1.2960 7 6 2.9357 2.5579 1.9868 8 7 3.9357 1.6038 1.4536 9 6 4.9384 0.9984 2.1204 10 8 5.6811 0.2358 1.5376 11 6 5.1354 1.2660 3.5760 12 8 4.3927 2.0291 4.1589 13 7 6.1379 0.6602 4.2429 14 6 6.3233 0.9120 5.6106 15 6 5.5429 1.7684 6.4093 16 7 6.0158 1.7395 7.6292 17 7 7.1181 0.8757 7.6567 18 6 7.8878 0.5825 8.7551 19 1 8.7162 -0.1047 8.6661 20 6 7.6044 1.1745 9.9804 21 7 6.5974 2.0099 10.0886 22 14 8.6564 0.7815 11.4732 23 1 9.7196 -0.1817 11.0898 24 1 9.2789 2.0297 11.9826 25 1 7.8066 0.1835 12.5340 26 6 7.2879 0.3729 6.3997 27 6 3.5875 1.4711 0.0198 28 1 -0.3634 0.6115 0.8259 29 1 -0.3633 0.4095 -0.9426 30 1 -0.3633 -1.0210 0.1166 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.4217 2.2110 -1.1963 34 1 1.8920 3.2140 -1.2170 35 1 3.0620 1.3819 -2.4803 36 1 1.5203 0.4952 -2.5506 37 1 1.6804 2.0682 -3.3681 38 1 1.0401 1.4882 1.9328 39 1 1.0269 3.0513 1.0622 40 1 2.8468 2.4507 3.0679 41 1 3.2105 3.5805 1.7284 42 1 6.7311 0.0501 3.7772 43 1 4.6954 2.3475 6.0736 44 1 6.3995 2.4227 10.9438 45 1 8.0504 -0.3260 6.0891 46 1 3.9615 2.3264 -0.5428 47 1 3.9909 0.5429 -0.3850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746436330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:41 Heat of formation + Delta-G solvation = 14.504685 kcal Electronic energy + Delta-G solvation = -28825.144334 eV Core-core repulsion = 24817.038232 eV Total energy + Delta-G solvation = -4008.106102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.79518 -39.85609 -38.92975 -37.68931 -35.28830 -34.17601 -33.16951 -31.64916 -30.39375 -30.31221 -28.64998 -27.98383 -25.81327 -24.82396 -23.77912 -22.87770 -22.40927 -21.02459 -19.72163 -19.43626 -18.82962 -17.60134 -17.25888 -16.49462 -16.15970 -15.66759 -15.50523 -15.21809 -15.13362 -14.65296 -14.59491 -14.00633 -13.78024 -13.58587 -13.34203 -13.18194 -13.06617 -12.98597 -12.75737 -12.58826 -12.21628 -12.09333 -11.92485 -11.74142 -11.55085 -11.37690 -11.31029 -11.28722 -11.13869 -10.85811 -10.73824 -10.53818 -10.53451 -10.43118 -10.29502 -9.24421 -9.01105 -8.88496 -8.81941 -8.13470 -6.78396 -6.61203 -4.28242 1.67324 2.47856 2.92022 3.03534 3.09336 3.32734 3.68885 3.71239 3.85781 4.21055 4.36022 4.36970 4.43917 4.58289 4.84345 4.85726 4.97567 4.98238 5.02423 5.08213 5.14377 5.20645 5.27626 5.33638 5.45526 5.53212 5.58467 5.63484 5.74604 5.80246 5.82416 5.86583 5.90549 5.96999 6.04871 6.14873 6.19816 6.26551 6.35586 6.76366 6.88499 6.97392 7.15996 7.30923 7.70379 7.82905 8.11509 8.17924 8.49294 8.69369 9.30714 9.59330 10.34658 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031937 B = 0.002159 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.505020 B =12967.346778 C =13293.052500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.072 4.072 4 C -0.109 4.109 5 C -0.157 4.157 6 C -0.129 4.129 7 C 0.087 3.913 8 N -0.597 5.597 9 C 0.534 3.466 10 O -0.532 6.532 11 C 0.488 3.512 12 O -0.519 6.519 13 N -0.583 5.583 14 C -0.068 4.068 15 C -0.026 4.026 16 N -0.260 5.260 17 N -0.139 5.139 18 C -0.321 4.321 19 H 0.118 0.882 20 C 0.046 3.954 21 N -0.767 5.767 22 Si 0.936 3.064 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.077 4.077 27 C 0.113 3.887 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.071 0.929 42 H 0.409 0.591 43 H 0.178 0.822 44 H 0.275 0.725 45 H 0.149 0.851 46 H 0.075 0.925 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 -0.777 -19.771 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.073 4.073 4 C -0.147 4.147 5 C -0.214 4.214 6 C -0.167 4.167 7 C -0.036 4.036 8 N -0.331 5.331 9 C 0.318 3.682 10 O -0.409 6.409 11 C 0.270 3.730 12 O -0.396 6.396 13 N -0.226 5.226 14 C -0.174 4.174 15 C -0.202 4.202 16 N -0.091 5.091 17 N 0.094 4.906 18 C -0.454 4.454 19 H 0.136 0.864 20 C -0.172 4.172 21 N -0.394 5.394 22 Si 0.760 3.240 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.229 4.229 27 C -0.009 4.009 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.244 0.756 43 H 0.194 0.806 44 H 0.086 0.914 45 H 0.166 0.834 46 H 0.093 0.907 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.840 -0.114 -18.231 20.717 hybrid contribution 0.909 -0.790 -0.545 1.321 sum -8.931 -0.903 -18.776 20.811 Atomic orbital electron populations 1.21840 0.95606 1.01632 1.01948 1.21585 0.96056 0.94886 1.02282 1.21635 0.94026 0.96185 0.95436 1.21613 1.01043 0.98782 0.93230 1.21861 1.01591 1.00783 0.97170 1.22746 0.97328 1.00805 0.95787 1.22904 0.85980 0.92004 1.02677 1.48635 1.29529 1.44317 1.10573 1.19910 0.80109 0.80377 0.87803 1.90730 1.44545 1.35932 1.69689 1.19559 0.83069 0.83526 0.86887 1.90545 1.44642 1.36126 1.68336 1.42151 1.29264 1.42992 1.08169 1.17250 1.05453 1.11912 0.82818 1.24140 1.02634 1.02592 0.90842 1.78258 1.00407 1.13253 1.17195 1.44570 1.17222 1.23956 1.04807 1.19970 1.11655 1.28297 0.85429 0.86395 1.25671 0.96650 0.95179 0.99669 1.70217 1.22820 1.20683 1.25663 0.85740 0.79428 0.78926 0.79934 1.18616 1.19864 1.19865 1.21306 1.05131 1.09599 0.86828 1.22617 0.94006 1.02705 0.81606 0.92321 0.92569 0.92904 0.91609 0.91845 0.91203 0.91688 0.92516 0.92387 0.92821 0.90453 0.90200 0.86380 0.91046 0.75609 0.80557 0.91413 0.83360 0.90716 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.21 37.16 0.34 -0.72 16 2 C -0.11 -0.91 4.36 -26.73 -0.12 -1.02 16 3 C -0.07 -0.58 0.49 -152.89 -0.07 -0.65 16 4 C -0.11 -0.68 4.28 -26.73 -0.11 -0.79 16 5 C -0.16 -0.93 9.29 37.16 0.35 -0.58 16 6 C -0.13 -1.11 5.69 -25.33 -0.14 -1.25 16 7 C 0.09 0.99 6.60 -2.41 -0.02 0.98 16 8 N -0.60 -7.86 3.31 -169.62 -0.56 -8.43 16 9 C 0.53 8.68 7.97 -11.65 -0.09 8.58 16 10 O -0.53 -9.37 16.74 5.49 0.09 -9.28 16 11 C 0.49 9.04 7.83 -11.65 -0.09 8.95 16 12 O -0.52 -10.33 10.91 5.45 0.06 -10.27 16 13 N -0.58 -11.20 5.45 -10.45 -0.06 -11.26 16 14 C -0.07 -1.59 6.90 -83.92 -0.58 -2.16 16 15 C -0.03 -0.68 10.85 -17.02 -0.18 -0.86 16 16 N -0.26 -7.45 10.39 30.81 0.32 -7.13 16 17 N -0.14 -3.77 3.73 -11.40 -0.04 -3.82 16 18 C -0.32 -8.40 10.25 -14.82 -0.15 -8.56 16 19 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 20 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 21 N -0.77 -21.13 11.81 55.50 0.66 -20.47 16 22 Si 0.94 18.70 29.55 -169.99 -5.02 13.68 16 23 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 27 C 0.11 1.15 5.04 -2.19 -0.01 1.14 16 28 H 0.06 0.41 6.59 -51.93 -0.34 0.07 16 29 H 0.06 0.34 6.86 -51.93 -0.36 -0.02 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.51 6.70 -51.93 -0.35 0.16 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.40 6.68 -51.93 -0.35 0.05 16 34 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 35 H 0.06 0.36 7.16 -51.93 -0.37 -0.02 16 36 H 0.06 0.34 6.82 -51.93 -0.35 -0.01 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.70 6.69 -51.93 -0.35 0.35 16 39 H 0.08 0.55 7.72 -51.93 -0.40 0.15 16 40 H 0.12 1.64 5.48 -51.93 -0.28 1.35 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.41 6.85 8.29 -40.82 -0.34 6.51 16 43 H 0.18 4.38 5.92 -52.49 -0.31 4.07 16 44 H 0.28 6.89 8.31 -40.82 -0.34 6.56 16 45 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 46 H 0.07 0.68 7.82 -51.93 -0.41 0.28 16 47 H 0.08 0.92 7.61 -51.93 -0.40 0.52 16 LS Contribution 374.19 15.07 5.64 5.64 Total: -1.00 -31.85 374.19 -6.78 -38.62 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.68 Total: 10.59 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -1.17 Total: 2.11 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.31 Total: -51.09 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.15 Total: -19.55 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.85 -6.78 -38.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746436330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.127 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds