Wall clock time and date at job start Tue Mar 31 2020 17:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 C 1.53000 * 110.30775 * 301.44566 * 3 2 1 5 5 C 1.53000 * 109.47197 * 300.68553 * 4 3 2 6 6 C 1.54284 * 110.34325 * 63.62491 * 3 2 1 7 7 C 1.54389 * 104.96134 * 118.87019 * 6 3 2 8 8 N 1.48141 * 104.61724 * 336.13154 * 7 6 3 9 9 C 1.34783 * 127.83987 * 219.58329 * 8 7 6 10 10 O 1.21363 * 119.99908 * 180.02562 * 9 8 7 11 11 C 1.49308 * 119.99623 * 0.03027 * 9 8 7 12 12 O 1.21399 * 120.00483 * 359.97438 * 11 9 8 13 13 N 1.34782 * 119.99595 * 179.97438 * 11 9 8 14 14 C 1.40297 * 119.99878 * 179.97438 * 13 11 9 15 15 C 1.40728 * 126.09832 * 0.02562 * 14 13 11 16 16 N 1.30875 * 108.37300 * 179.71648 * 15 14 13 17 17 N 1.40063 * 108.43634 * 0.44037 * 16 15 14 18 18 C 1.37295 * 126.05754 * 179.81554 * 17 16 15 19 19 H 1.07994 * 120.00299 * 179.69366 * 18 17 16 20 20 C 1.39010 * 119.99460 * 359.41779 * 18 17 16 21 21 N 1.31278 * 120.00164 * 0.27190 * 20 18 17 22 22 Si 1.86804 * 119.99735 * 180.27691 * 20 18 17 23 23 H 1.48502 * 109.47280 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47164 * 119.99852 * 22 20 18 25 25 H 1.48498 * 109.46988 * 240.00032 * 22 20 18 26 26 C 1.35778 * 126.09888 * 180.02562 * 14 13 11 27 27 C 1.48149 * 104.32409 * 39.84774 * 8 7 6 28 28 H 1.09001 * 109.47260 * 306.51551 * 1 2 3 29 29 H 1.08998 * 109.46793 * 66.51938 * 1 2 3 30 30 H 1.08998 * 109.46899 * 186.51438 * 1 2 3 31 31 H 1.08998 * 109.47392 * 240.00183 * 2 1 3 32 32 H 1.08997 * 109.47418 * 119.99995 * 2 1 3 33 33 H 1.08998 * 109.46562 * 60.68603 * 4 3 2 34 34 H 1.09004 * 109.47132 * 180.67838 * 4 3 2 35 35 H 1.08996 * 109.46821 * 305.27613 * 5 4 3 36 36 H 1.09000 * 109.47185 * 65.27515 * 5 4 3 37 37 H 1.08997 * 109.47222 * 185.27838 * 5 4 3 38 38 H 1.08997 * 110.34023 * 0.02562 * 6 3 2 39 39 H 1.08996 * 110.43111 * 237.78806 * 6 3 2 40 40 H 1.09006 * 110.40636 * 217.35015 * 7 6 3 41 41 H 1.08994 * 110.50785 * 94.96870 * 7 6 3 42 42 H 0.97000 * 119.99889 * 359.97438 * 13 11 9 43 43 H 1.08000 * 125.81081 * 359.95806 * 15 14 13 44 44 H 0.97006 * 119.99603 * 179.97438 * 21 20 18 45 45 H 1.07996 * 126.25432 * 0.02562 * 26 14 13 46 46 H 1.08997 * 110.40307 * 78.93703 * 27 8 7 47 47 H 1.08996 * 110.40724 * 201.36986 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5112 2.1927 -1.2242 5 6 1.9769 1.4835 -2.4974 6 6 1.6128 2.1624 1.2960 7 6 2.9357 2.5579 1.9868 8 7 3.9357 1.6038 1.4536 9 6 4.9384 0.9984 2.1204 10 8 5.6811 0.2358 1.5376 11 6 5.1354 1.2660 3.5760 12 8 4.3927 2.0291 4.1589 13 7 6.1379 0.6602 4.2429 14 6 6.3233 0.9120 5.6106 15 6 5.5429 1.7684 6.4093 16 7 6.0158 1.7395 7.6292 17 7 7.1181 0.8757 7.6567 18 6 7.8878 0.5825 8.7551 19 1 8.7162 -0.1047 8.6661 20 6 7.6044 1.1745 9.9804 21 7 6.5974 2.0099 10.0886 22 14 8.6564 0.7815 11.4732 23 1 9.7196 -0.1817 11.0898 24 1 9.2789 2.0297 11.9826 25 1 7.8066 0.1835 12.5340 26 6 7.2879 0.3729 6.3997 27 6 3.5875 1.4711 0.0198 28 1 -0.3634 0.6115 0.8259 29 1 -0.3633 0.4095 -0.9426 30 1 -0.3633 -1.0210 0.1166 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.4217 2.2110 -1.1963 34 1 1.8920 3.2140 -1.2170 35 1 3.0620 1.3819 -2.4803 36 1 1.5203 0.4952 -2.5506 37 1 1.6804 2.0682 -3.3681 38 1 1.0401 1.4882 1.9328 39 1 1.0269 3.0513 1.0622 40 1 2.8468 2.4507 3.0679 41 1 3.2105 3.5805 1.7284 42 1 6.7311 0.0501 3.7772 43 1 4.6954 2.3475 6.0736 44 1 6.3995 2.4227 10.9438 45 1 8.0504 -0.3260 6.0891 46 1 3.9615 2.3264 -0.5428 47 1 3.9909 0.5429 -0.3850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746436330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:40 Heat of formation + Delta-G solvation = -5.842018 kcal Electronic energy + Delta-G solvation = -28826.026633 eV Core-core repulsion = 24817.038232 eV Total energy + Delta-G solvation = -4008.988401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.13358 -41.41900 -40.22997 -39.07892 -36.45985 -35.67044 -34.94812 -32.30688 -32.19540 -31.26888 -29.97360 -29.34087 -27.28782 -26.27005 -24.48773 -24.01043 -23.23518 -22.89248 -21.41668 -20.97654 -19.69694 -19.29629 -18.49554 -17.84238 -17.45655 -17.30033 -16.81961 -16.27550 -16.21958 -16.01942 -15.67610 -15.49803 -15.18418 -14.90647 -14.79748 -14.44982 -14.14255 -13.77339 -13.67753 -13.51722 -13.40942 -13.28989 -13.01303 -12.94778 -12.84763 -12.70056 -12.56868 -12.40088 -12.03539 -12.02906 -11.97816 -11.87513 -11.39181 -11.16549 -11.12614 -11.09086 -10.88344 -10.41773 -10.15161 -9.92967 -8.63654 -8.49900 -6.27386 0.25485 1.18835 1.27504 1.41104 1.59534 1.70750 2.01712 2.09848 2.44869 2.51422 2.83529 3.06647 3.36775 3.53813 3.63550 3.76668 4.18297 4.21335 4.30175 4.38234 4.45015 4.49469 4.50994 4.57144 4.64197 4.66000 4.72155 4.88848 4.92457 4.94572 4.96342 4.98138 5.03208 5.10166 5.12526 5.22313 5.26412 5.31458 5.35951 5.37760 5.40813 5.48114 5.65510 5.90535 6.09670 6.19977 6.36340 6.64696 6.73474 7.05295 7.40099 7.61732 8.49522 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031937 B = 0.002159 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.505020 B =12967.346778 C =13293.052500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.063 4.063 4 C -0.103 4.103 5 C -0.157 4.157 6 C -0.121 4.121 7 C 0.081 3.919 8 N -0.591 5.591 9 C 0.536 3.464 10 O -0.549 6.549 11 C 0.489 3.511 12 O -0.533 6.533 13 N -0.583 5.583 14 C -0.056 4.056 15 C -0.046 4.046 16 N -0.307 5.307 17 N -0.163 5.163 18 C -0.352 4.352 19 H 0.141 0.859 20 C -0.006 4.006 21 N -0.820 5.820 22 Si 1.020 2.980 23 H -0.242 1.242 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.076 4.076 27 C 0.109 3.891 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.422 0.578 43 H 0.177 0.823 44 H 0.278 0.722 45 H 0.187 0.813 46 H 0.092 0.908 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 -1.144 -21.618 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.064 4.064 4 C -0.141 4.141 5 C -0.214 4.214 6 C -0.159 4.159 7 C -0.041 4.041 8 N -0.324 5.324 9 C 0.319 3.681 10 O -0.428 6.428 11 C 0.271 3.729 12 O -0.411 6.411 13 N -0.228 5.228 14 C -0.162 4.162 15 C -0.222 4.222 16 N -0.138 5.138 17 N 0.069 4.931 18 C -0.483 4.483 19 H 0.159 0.841 20 C -0.218 4.218 21 N -0.448 5.448 22 Si 0.839 3.161 23 H -0.165 1.165 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.227 4.227 27 C -0.012 4.012 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.259 0.741 43 H 0.194 0.806 44 H 0.088 0.912 45 H 0.204 0.796 46 H 0.110 0.890 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.901 -0.480 -20.142 22.449 hybrid contribution 0.809 -0.651 -0.169 1.052 sum -9.092 -1.131 -20.310 22.281 Atomic orbital electron populations 1.21815 0.94381 1.01761 1.02713 1.21570 0.97099 0.94796 1.01283 1.21609 0.92262 0.96347 0.96171 1.21598 1.01712 0.98764 0.92030 1.21864 1.01233 1.00975 0.97373 1.22736 0.95739 1.01830 0.95575 1.23022 0.87126 0.92416 1.01490 1.48770 1.28347 1.43250 1.12023 1.19344 0.81124 0.81017 0.86588 1.90722 1.45562 1.37004 1.69510 1.20141 0.82150 0.82514 0.88072 1.90554 1.44907 1.36452 1.69161 1.42097 1.30155 1.43821 1.06736 1.17288 1.04241 1.10316 0.84357 1.24248 1.03261 1.03661 0.91015 1.78154 1.01960 1.14998 1.18727 1.44848 1.17440 1.24639 1.06188 1.20689 1.12485 1.29290 0.85864 0.84135 1.26889 0.97684 0.94339 1.02862 1.70380 1.25221 1.22485 1.26713 0.84524 0.77657 0.78950 0.75010 1.16456 1.19684 1.19686 1.21985 1.05561 1.09296 0.85812 1.22910 0.95695 1.03129 0.79480 0.92384 0.91066 0.93030 0.91090 0.94417 0.89984 0.90890 0.93090 0.92370 0.91871 0.91040 0.87620 0.89023 0.89565 0.74079 0.80640 0.91219 0.79615 0.88974 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.21 71.98 0.66 -1.11 16 2 C -0.11 -1.64 4.36 30.59 0.13 -1.51 16 3 C -0.06 -0.87 0.49 -51.13 -0.03 -0.90 16 4 C -0.10 -0.94 4.28 30.59 0.13 -0.81 16 5 C -0.16 -1.41 9.29 71.98 0.67 -0.74 16 6 C -0.12 -1.84 5.69 31.50 0.18 -1.66 16 7 C 0.08 1.78 6.60 86.54 0.57 2.35 16 8 N -0.59 -15.10 3.31 -808.90 -2.68 -17.78 16 9 C 0.54 17.27 7.97 87.22 0.70 17.97 16 10 O -0.55 -19.06 16.74 -3.29 -0.06 -19.11 16 11 C 0.49 18.24 7.83 87.22 0.68 18.92 16 12 O -0.53 -21.70 10.91 -3.40 -0.04 -21.73 16 13 N -0.58 -22.36 5.45 -305.32 -1.66 -24.03 16 14 C -0.06 -2.61 6.90 37.82 0.26 -2.35 16 15 C -0.05 -2.48 10.85 85.44 0.93 -1.55 16 16 N -0.31 -18.23 10.39 -56.43 -0.59 -18.82 16 17 N -0.16 -9.03 3.73 -189.98 -0.71 -9.74 16 18 C -0.35 -18.55 10.25 84.02 0.86 -17.68 16 19 H 0.14 6.45 7.83 -2.91 -0.02 6.42 16 20 C -0.01 -0.29 5.50 84.96 0.47 0.18 16 21 N -0.82 -46.70 11.81 21.66 0.26 -46.45 16 22 Si 1.02 38.25 29.55 68.60 2.03 40.28 16 23 H -0.24 -8.16 7.11 99.48 0.71 -7.46 16 24 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 26 C -0.08 -3.56 11.50 83.40 0.96 -2.60 16 27 C 0.11 2.03 5.04 86.67 0.44 2.47 16 28 H 0.06 0.70 6.59 -2.39 -0.02 0.68 16 29 H 0.07 0.64 6.86 -2.39 -0.02 0.62 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.99 6.70 -2.39 -0.02 0.97 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.61 6.68 -2.39 -0.02 0.59 16 34 H 0.07 0.60 8.13 -2.38 -0.02 0.58 16 35 H 0.05 0.52 7.16 -2.39 -0.02 0.50 16 36 H 0.06 0.52 6.82 -2.39 -0.02 0.51 16 37 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.07 1.21 6.69 -2.39 -0.02 1.19 16 39 H 0.11 1.12 7.72 -2.39 -0.02 1.10 16 40 H 0.09 2.57 5.48 -2.38 -0.01 2.55 16 41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.42 13.85 8.29 -92.71 -0.77 13.08 16 43 H 0.18 9.15 5.92 -2.91 -0.02 9.13 16 44 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 45 H 0.19 7.04 8.06 -2.91 -0.02 7.02 16 46 H 0.09 1.45 7.82 -2.39 -0.02 1.43 16 47 H 0.08 1.58 7.61 -2.39 -0.02 1.56 16 Total: -1.00 -71.80 374.19 4.40 -67.40 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: 0.24 Total: 39.01 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 7.61 Total: 10.97 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -5.38 Total: -116.81 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.09 Total: -40.85 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -71.80 4.40 -67.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746436330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.557 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds