Wall clock time and date at job start Tue Mar 31 2020 18:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46952 * 2 1 4 4 C 1.35211 * 126.06656 * 85.02032 * 3 2 1 5 5 C 1.40461 * 107.86851 * 179.97438 * 4 3 2 6 6 N 1.39939 * 125.97856 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99706 * 0.02562 * 6 5 4 8 8 O 1.21377 * 120.00474 * 0.02562 * 7 6 5 9 9 C 1.49342 * 119.99556 * 179.97438 * 7 6 5 10 10 O 1.21364 * 120.00393 * 353.05564 * 9 7 6 11 11 N 1.34777 * 120.00181 * 173.04468 * 9 7 6 12 12 C 1.46933 * 120.62793 * 1.63792 * 11 9 7 13 13 C 1.52757 * 109.01003 * 233.58163 * 12 11 9 14 14 C 1.53039 * 109.38049 * 305.58636 * 13 12 11 15 15 C 1.53048 * 109.54032 * 61.24225 * 14 13 12 16 16 H 1.08999 * 109.49693 * 58.58367 * 15 14 13 17 17 C 1.50695 * 109.52612 * 178.66596 * 15 14 13 18 18 H 1.08001 * 119.99862 * 359.85195 * 17 15 14 19 19 C 1.37882 * 119.99978 * 179.85165 * 17 15 14 20 20 N 1.31511 * 119.99833 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00004 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47339 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47081 * 120.00021 * 21 19 17 24 24 H 1.48502 * 109.47293 * 240.00292 * 21 19 17 25 25 C 1.46924 * 120.63389 * 181.91101 * 11 9 7 26 26 N 1.31268 * 108.03939 * 0.02562 * 5 4 3 27 27 N 1.34993 * 126.05787 * 264.71043 * 3 2 1 28 28 C 1.46501 * 125.97176 * 0.04301 * 27 3 2 29 29 H 1.09000 * 109.47213 * 300.00356 * 1 2 3 30 30 H 1.09001 * 109.46586 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46804 * 60.00618 * 1 2 3 32 32 H 1.09000 * 109.46804 * 119.99382 * 2 1 3 33 33 H 1.09000 * 109.47213 * 239.99644 * 2 1 3 34 34 H 1.07997 * 126.06360 * 359.97438 * 4 3 2 35 35 H 0.96990 * 119.99987 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.58681 * 353.41900 * 12 11 9 37 37 H 1.09002 * 109.58560 * 113.83842 * 12 11 9 38 38 H 1.08998 * 109.56454 * 185.55919 * 13 12 11 39 39 H 1.08999 * 109.35987 * 65.49898 * 13 12 11 40 40 H 1.09005 * 109.46314 * 301.22261 * 14 13 12 41 41 H 1.08999 * 109.45159 * 181.25184 * 14 13 12 42 42 H 0.97003 * 120.00231 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.58667 * 246.15920 * 25 11 9 44 44 H 1.08997 * 109.58522 * 6.44830 * 25 11 9 45 45 H 1.08994 * 109.47523 * 89.99854 * 28 27 3 46 46 H 1.08997 * 109.46566 * 209.99690 * 28 27 3 47 47 H 1.09001 * 109.47043 * 329.98965 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2082 2.2030 1.0888 5 6 2.6894 3.4481 0.6519 6 7 3.0003 4.5417 1.4678 7 6 2.8445 4.4517 2.8035 8 8 2.4351 3.4220 3.2988 9 6 3.1768 5.6186 3.6743 10 8 3.7044 6.6016 3.1965 11 7 2.8907 5.5802 4.9908 12 6 2.2846 4.3835 5.5905 13 6 1.0184 4.7904 6.3420 14 6 1.3567 5.8946 7.3462 15 6 1.8920 7.1189 6.5999 16 1 1.1444 7.4657 5.8866 17 6 2.1942 8.2176 7.5861 18 1 2.0195 8.0601 8.6402 19 6 2.6935 9.4238 7.1427 20 7 2.9056 9.6157 5.8590 21 14 3.0674 10.7860 8.3650 22 1 2.7433 10.3219 9.7379 23 1 4.5082 11.1375 8.2891 24 1 2.2484 11.9814 8.0399 25 6 3.1733 6.7362 5.8524 26 7 2.7954 3.4068 -0.6559 27 7 2.3920 2.1365 -1.0867 28 6 2.3616 1.6678 -2.4744 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8901 32 1 1.8933 -0.5137 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 2.0132 1.9204 2.1128 35 1 3.3278 5.3644 1.0721 36 1 2.0292 3.6711 4.8060 37 1 2.9885 3.9271 6.2864 38 1 0.6154 3.9276 6.8722 39 1 0.2791 5.1592 5.6310 40 1 2.1143 5.5334 8.0417 41 1 0.4585 6.1703 7.8987 42 1 3.2566 10.4645 5.5470 43 1 3.9511 6.4755 6.5701 44 1 3.5064 7.5748 5.2409 45 1 1.3896 1.8931 -2.9128 46 1 3.1428 2.1704 -3.0447 47 1 2.5302 0.5911 -2.4980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850542068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:03 Heat of formation + Delta-G solvation = 28.033261 kcal Electronic energy + Delta-G solvation = -29126.310204 eV Core-core repulsion = 25118.790745 eV Total energy + Delta-G solvation = -4007.519459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67571 -40.48538 -38.41043 -36.94711 -35.53258 -33.98713 -33.25874 -32.47867 -31.76627 -29.78539 -29.24155 -27.12073 -25.69287 -25.02266 -24.13182 -23.27287 -21.84221 -21.03584 -20.42454 -19.76533 -18.69281 -17.19065 -17.17899 -16.52908 -16.21306 -16.04890 -15.58070 -15.39410 -15.05355 -14.70294 -14.53744 -14.15055 -13.95277 -13.80444 -13.43837 -13.35833 -13.13266 -12.95243 -12.75756 -12.67120 -12.56099 -12.15012 -11.89097 -11.83448 -11.50302 -11.32676 -10.99888 -10.90040 -10.74076 -10.66266 -10.45448 -10.30148 -10.08900 -9.90236 -9.22286 -9.12862 -8.84983 -8.56605 -8.45268 -8.35914 -7.87539 -6.02614 -4.10864 1.32477 1.85587 1.91193 2.76573 2.81561 3.29517 3.38005 3.41138 3.60903 3.81819 4.24315 4.40622 4.41797 4.56514 4.60465 4.81020 4.94406 5.06245 5.15239 5.27868 5.29227 5.37846 5.44933 5.54150 5.63754 5.66997 5.75538 5.83656 5.89280 5.98087 6.22870 6.36757 6.47427 6.58265 6.66398 6.77051 6.81860 6.86955 6.90992 6.97435 7.06084 7.15131 7.55781 7.65988 7.80912 7.88818 7.93001 8.09930 8.32506 8.50186 8.93424 9.54915 11.02949 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.002557 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.437330 B =10949.675164 C =11834.689608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C 0.092 3.908 4 C -0.263 4.263 5 C 0.302 3.698 6 N -0.611 5.611 7 C 0.524 3.476 8 O -0.490 6.490 9 C 0.500 3.500 10 O -0.518 6.518 11 N -0.561 5.561 12 C 0.048 3.952 13 C -0.131 4.131 14 C -0.113 4.113 15 C 0.040 3.960 16 H 0.030 0.970 17 C -0.519 4.519 18 H 0.060 0.940 19 C 0.062 3.938 20 N -0.882 5.882 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.108 3.892 26 N -0.320 5.320 27 N -0.368 5.368 28 C 0.105 3.895 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.174 0.826 35 H 0.428 0.572 36 H 0.144 0.856 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.263 0.737 43 H 0.050 0.950 44 H 0.125 0.875 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 -20.506 -13.782 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.035 4.035 4 C -0.293 4.293 5 C 0.046 3.954 6 N -0.260 5.260 7 C 0.307 3.693 8 O -0.364 6.364 9 C 0.280 3.720 10 O -0.395 6.395 11 N -0.293 5.293 12 C -0.073 4.073 13 C -0.169 4.169 14 C -0.151 4.151 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.557 4.557 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.519 5.519 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.012 4.012 26 N -0.149 5.149 27 N -0.152 5.152 28 C -0.037 4.037 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.191 0.809 35 H 0.266 0.734 36 H 0.160 0.840 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.143 0.857 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.346 -19.922 -14.899 24.988 hybrid contribution 0.203 0.919 1.093 1.442 sum -2.143 -19.004 -13.806 23.587 Atomic orbital electron populations 1.21742 0.93756 1.02196 1.02807 1.20220 0.96708 0.89085 1.03857 1.21121 0.99805 0.95751 0.86838 1.21596 1.14360 0.92476 1.00852 1.19070 0.98170 0.88847 0.89278 1.42411 1.63354 1.14921 1.05344 1.20972 0.77117 0.89311 0.81866 1.90235 1.43561 1.31280 1.71278 1.19378 0.82313 0.86594 0.83727 1.90803 1.42720 1.32649 1.73295 1.48462 1.56817 1.17835 1.06202 1.23070 0.94892 0.88413 1.00934 1.21841 0.97133 0.99100 0.98857 1.21667 1.00134 0.96038 0.97268 1.18981 0.92732 0.91577 0.94597 0.95193 1.21123 1.43854 0.97262 0.93471 0.92166 1.25067 0.95320 0.98514 0.95208 1.69878 1.44310 1.24837 1.12913 0.86514 0.77991 0.81967 0.81416 1.19769 1.20953 1.20999 1.22549 0.99789 0.86052 0.92810 1.77415 1.28197 0.99723 1.09600 1.47988 1.52056 1.08820 1.06343 1.21808 1.03760 1.00157 0.77932 0.91626 0.91724 0.92783 0.88919 0.90767 0.80889 0.73352 0.83985 0.92171 0.92077 0.92434 0.93156 0.93044 0.92646 0.93123 0.85746 0.90850 0.89266 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.06 -0.39 6.22 -27.88 -0.17 -0.57 16 3 C 0.09 0.98 6.18 -82.28 -0.51 0.47 16 4 C -0.26 -3.55 9.51 -39.82 -0.38 -3.93 16 5 C 0.30 4.52 8.10 -154.55 -1.25 3.27 16 6 N -0.61 -9.40 5.43 -11.58 -0.06 -9.46 16 7 C 0.52 8.82 7.76 -11.64 -0.09 8.73 16 8 O -0.49 -8.00 10.14 5.47 0.06 -7.95 16 9 C 0.50 10.02 7.76 -11.64 -0.09 9.93 16 10 O -0.52 -11.79 15.91 5.48 0.09 -11.70 16 11 N -0.56 -11.51 2.98 -173.58 -0.52 -12.03 16 12 C 0.05 0.84 6.20 -3.93 -0.02 0.81 16 13 C -0.13 -2.26 6.06 -26.84 -0.16 -2.42 16 14 C -0.11 -2.29 5.11 -26.69 -0.14 -2.43 16 15 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 16 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.52 -13.93 8.57 -34.44 -0.29 -14.23 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 20 N -0.88 -25.32 11.39 55.43 0.63 -24.68 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.11 2.58 5.40 -3.71 -0.02 2.56 16 26 N -0.32 -4.59 12.59 31.41 0.40 -4.19 16 27 N -0.37 -4.06 4.01 -63.90 -0.26 -4.32 16 28 C 0.10 0.64 11.26 59.85 0.67 1.32 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.34 6.93 -51.93 -0.36 -0.02 16 34 H 0.17 2.40 5.91 -52.49 -0.31 2.09 16 35 H 0.43 6.27 8.31 -40.82 -0.34 5.93 16 36 H 0.14 2.34 3.79 -56.98 -0.22 2.12 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.12 3.43 5.13 -51.93 -0.27 3.16 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 0.30 6.96 -51.93 -0.36 -0.06 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -32.14 377.83 -8.27 -40.41 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.89 Total: 6.76 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -2.39 Total: 5.37 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.19 Total: -54.68 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.14 Total: -19.65 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.14 -8.27 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850542068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.443 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds