Wall clock time and date at job start Tue Mar 31 2020 18:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46952 * 2 1 4 4 C 1.35211 * 126.06656 * 85.02032 * 3 2 1 5 5 C 1.40461 * 107.86851 * 179.97438 * 4 3 2 6 6 N 1.39939 * 125.97856 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99706 * 0.02562 * 6 5 4 8 8 O 1.21377 * 120.00474 * 0.02562 * 7 6 5 9 9 C 1.49342 * 119.99556 * 179.97438 * 7 6 5 10 10 O 1.21364 * 120.00393 * 353.05564 * 9 7 6 11 11 N 1.34777 * 120.00181 * 173.04468 * 9 7 6 12 12 C 1.46933 * 120.62793 * 1.63792 * 11 9 7 13 13 C 1.52757 * 109.01003 * 233.58163 * 12 11 9 14 14 C 1.53039 * 109.38049 * 305.58636 * 13 12 11 15 15 C 1.53048 * 109.54032 * 61.24225 * 14 13 12 16 16 H 1.08999 * 109.49693 * 58.58367 * 15 14 13 17 17 C 1.50695 * 109.52612 * 178.66596 * 15 14 13 18 18 H 1.08001 * 119.99862 * 359.85195 * 17 15 14 19 19 C 1.37882 * 119.99978 * 179.85165 * 17 15 14 20 20 N 1.31511 * 119.99833 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00004 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47339 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47081 * 120.00021 * 21 19 17 24 24 H 1.48502 * 109.47293 * 240.00292 * 21 19 17 25 25 C 1.46924 * 120.63389 * 181.91101 * 11 9 7 26 26 N 1.31268 * 108.03939 * 0.02562 * 5 4 3 27 27 N 1.34993 * 126.05787 * 264.71043 * 3 2 1 28 28 C 1.46501 * 125.97176 * 0.04301 * 27 3 2 29 29 H 1.09000 * 109.47213 * 300.00356 * 1 2 3 30 30 H 1.09001 * 109.46586 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46804 * 60.00618 * 1 2 3 32 32 H 1.09000 * 109.46804 * 119.99382 * 2 1 3 33 33 H 1.09000 * 109.47213 * 239.99644 * 2 1 3 34 34 H 1.07997 * 126.06360 * 359.97438 * 4 3 2 35 35 H 0.96990 * 119.99987 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.58681 * 353.41900 * 12 11 9 37 37 H 1.09002 * 109.58560 * 113.83842 * 12 11 9 38 38 H 1.08998 * 109.56454 * 185.55919 * 13 12 11 39 39 H 1.08999 * 109.35987 * 65.49898 * 13 12 11 40 40 H 1.09005 * 109.46314 * 301.22261 * 14 13 12 41 41 H 1.08999 * 109.45159 * 181.25184 * 14 13 12 42 42 H 0.97003 * 120.00231 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.58667 * 246.15920 * 25 11 9 44 44 H 1.08997 * 109.58522 * 6.44830 * 25 11 9 45 45 H 1.08994 * 109.47523 * 89.99854 * 28 27 3 46 46 H 1.08997 * 109.46566 * 209.99690 * 28 27 3 47 47 H 1.09001 * 109.47043 * 329.98965 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2082 2.2030 1.0888 5 6 2.6894 3.4481 0.6519 6 7 3.0003 4.5417 1.4678 7 6 2.8445 4.4517 2.8035 8 8 2.4351 3.4220 3.2988 9 6 3.1768 5.6186 3.6743 10 8 3.7044 6.6016 3.1965 11 7 2.8907 5.5802 4.9908 12 6 2.2846 4.3835 5.5905 13 6 1.0184 4.7904 6.3420 14 6 1.3567 5.8946 7.3462 15 6 1.8920 7.1189 6.5999 16 1 1.1444 7.4657 5.8866 17 6 2.1942 8.2176 7.5861 18 1 2.0195 8.0601 8.6402 19 6 2.6935 9.4238 7.1427 20 7 2.9056 9.6157 5.8590 21 14 3.0674 10.7860 8.3650 22 1 2.7433 10.3219 9.7379 23 1 4.5082 11.1375 8.2891 24 1 2.2484 11.9814 8.0399 25 6 3.1733 6.7362 5.8524 26 7 2.7954 3.4068 -0.6559 27 7 2.3920 2.1365 -1.0867 28 6 2.3616 1.6678 -2.4744 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8901 32 1 1.8933 -0.5137 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 2.0132 1.9204 2.1128 35 1 3.3278 5.3644 1.0721 36 1 2.0292 3.6711 4.8060 37 1 2.9885 3.9271 6.2864 38 1 0.6154 3.9276 6.8722 39 1 0.2791 5.1592 5.6310 40 1 2.1143 5.5334 8.0417 41 1 0.4585 6.1703 7.8987 42 1 3.2566 10.4645 5.5470 43 1 3.9511 6.4755 6.5701 44 1 3.5064 7.5748 5.2409 45 1 1.3896 1.8931 -2.9128 46 1 3.1428 2.1704 -3.0447 47 1 2.5302 0.5911 -2.4980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850542068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:02 Heat of formation + Delta-G solvation = 7.375971 kcal Electronic energy + Delta-G solvation = -29127.205971 eV Core-core repulsion = 25118.790745 eV Total energy + Delta-G solvation = -4008.415226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.73346 -41.83540 -39.90748 -38.60808 -36.70157 -35.22279 -34.63247 -33.51134 -33.30842 -31.59503 -30.06904 -28.32334 -27.13967 -26.69574 -24.91901 -24.52615 -23.52704 -22.32800 -21.52217 -21.07359 -20.17368 -18.78722 -18.31471 -18.07697 -17.62261 -17.29950 -16.89449 -16.53927 -16.41426 -16.37191 -15.61394 -15.38314 -15.23739 -14.92314 -14.78370 -14.65573 -14.44602 -14.12259 -13.94711 -13.78408 -13.53683 -13.40344 -13.32806 -12.93534 -12.89281 -12.46310 -12.43734 -12.29942 -12.15051 -11.96605 -11.86301 -11.70887 -11.66338 -11.60614 -11.14499 -10.97991 -10.55083 -10.05494 -9.82193 -9.60491 -9.33934 -8.11846 -6.28154 -0.00941 0.78472 0.86775 1.40949 1.43020 1.54671 1.64061 1.70274 2.17612 2.40702 2.47547 3.08191 3.17771 3.56164 3.75122 4.09388 4.14229 4.20118 4.31152 4.37482 4.43652 4.47968 4.48987 4.60764 4.64526 4.68458 4.71494 4.77620 4.82673 4.84812 5.07119 5.08789 5.11150 5.15442 5.24445 5.26480 5.34497 5.40383 5.45624 5.57892 5.63120 5.76733 5.85936 5.94459 6.09810 6.26493 6.34993 6.54221 6.68358 6.81302 6.88690 7.41825 8.92233 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023476 B = 0.002557 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.437330 B =10949.675164 C =11834.689608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C 0.110 3.890 4 C -0.292 4.292 5 C 0.277 3.723 6 N -0.604 5.604 7 C 0.536 3.464 8 O -0.483 6.483 9 C 0.495 3.505 10 O -0.554 6.554 11 N -0.566 5.566 12 C 0.047 3.953 13 C -0.124 4.124 14 C -0.107 4.107 15 C 0.038 3.962 16 H -0.010 1.010 17 C -0.533 4.533 18 H 0.063 0.937 19 C 0.010 3.990 20 N -0.915 5.915 21 Si 0.959 3.041 22 H -0.262 1.262 23 H -0.282 1.282 24 H -0.283 1.283 25 C 0.120 3.880 26 N -0.347 5.347 27 N -0.361 5.361 28 C 0.091 3.909 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.167 0.833 35 H 0.428 0.572 36 H 0.157 0.843 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.261 0.739 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.447 -23.731 -14.163 27.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.019 4.019 4 C -0.322 4.322 5 C 0.023 3.977 6 N -0.253 5.253 7 C 0.318 3.682 8 O -0.357 6.357 9 C 0.276 3.724 10 O -0.433 6.433 11 N -0.297 5.297 12 C -0.072 4.072 13 C -0.161 4.161 14 C -0.145 4.145 15 C 0.019 3.981 16 H 0.008 0.992 17 C -0.571 4.571 18 H 0.082 0.918 19 C -0.189 4.189 20 N -0.553 5.553 21 Si 0.784 3.216 22 H -0.185 1.185 23 H -0.208 1.208 24 H -0.209 1.209 25 C -0.001 4.001 26 N -0.178 5.178 27 N -0.145 5.145 28 C -0.048 4.048 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.184 0.816 35 H 0.266 0.734 36 H 0.173 0.827 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.066 -23.185 -15.297 27.946 hybrid contribution 0.388 1.828 1.065 2.151 sum -2.678 -21.358 -14.233 25.805 Atomic orbital electron populations 1.21726 0.93244 1.03387 1.01902 1.20421 0.96917 0.86412 1.05836 1.21677 0.97482 0.97004 0.85782 1.21652 1.16303 0.92620 1.01631 1.19221 0.99733 0.89029 0.89679 1.42205 1.62799 1.15427 1.04851 1.20048 0.77861 0.88147 0.82144 1.90216 1.43691 1.30473 1.71295 1.19910 0.81419 0.87181 0.83877 1.90775 1.44177 1.34378 1.73992 1.48466 1.57040 1.17895 1.06340 1.23334 0.95144 0.87123 1.01644 1.21814 0.96864 0.99384 0.98088 1.21565 1.00207 0.95056 0.97654 1.18925 0.92032 0.93260 0.93897 0.99162 1.21511 1.43402 0.98206 0.94013 0.91839 1.25884 0.95266 1.01001 0.96757 1.70056 1.45292 1.25172 1.14824 0.85492 0.77607 0.78896 0.79589 1.18542 1.20785 1.20908 1.22022 0.99298 0.86353 0.92454 1.77323 1.29060 1.02062 1.09319 1.48441 1.50338 1.07593 1.08149 1.22290 1.04847 1.02256 0.75440 0.93410 0.89475 0.92867 0.88016 0.87722 0.81586 0.73355 0.82685 0.90485 0.87980 0.93447 0.92293 0.92756 0.92976 0.93330 0.89631 0.89328 0.88987 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.89 71.98 0.71 -0.61 16 2 C -0.06 -0.55 6.22 29.85 0.19 -0.36 16 3 C 0.11 2.11 6.18 41.38 0.26 2.36 16 4 C -0.29 -7.68 9.51 22.11 0.21 -7.47 16 5 C 0.28 8.35 8.10 133.40 1.08 9.43 16 6 N -0.60 -19.22 5.43 -308.90 -1.68 -20.89 16 7 C 0.54 18.41 7.76 87.24 0.68 19.09 16 8 O -0.48 -15.58 10.14 -3.33 -0.03 -15.61 16 9 C 0.49 20.64 7.76 87.24 0.68 21.32 16 10 O -0.55 -26.79 15.91 -3.29 -0.05 -26.84 16 11 N -0.57 -23.77 2.98 -821.43 -2.45 -26.22 16 12 C 0.05 1.58 6.20 86.22 0.53 2.12 16 13 C -0.12 -4.04 6.06 30.53 0.19 -3.86 16 14 C -0.11 -4.26 5.11 30.62 0.16 -4.11 16 15 C 0.04 1.93 2.25 -11.46 -0.03 1.91 16 16 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 17 C -0.53 -29.22 8.57 25.60 0.22 -29.01 16 18 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 19 C 0.01 0.58 5.30 84.66 0.45 1.03 16 20 N -0.91 -54.84 11.39 21.45 0.24 -54.59 16 21 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 C 0.12 6.00 5.40 86.36 0.47 6.46 16 26 N -0.35 -9.84 12.59 -54.53 -0.69 -10.53 16 27 N -0.36 -7.25 4.01 -356.08 -1.43 -8.68 16 28 C 0.09 0.83 11.26 127.77 1.44 2.27 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 0.41 6.93 -2.39 -0.02 0.39 16 34 H 0.17 4.50 5.91 -2.91 -0.02 4.49 16 35 H 0.43 13.30 8.31 -92.72 -0.77 12.53 16 36 H 0.16 4.86 3.79 -82.40 -0.31 4.55 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 43 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.09 5.00 5.13 -2.39 -0.01 4.99 16 45 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.12 0.26 6.96 -2.39 -0.02 0.25 16 Total: -1.00 -73.70 377.83 3.10 -70.60 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.07 Total: 26.08 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 7.22 Total: 20.57 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -6.00 Total: -120.91 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.09 Total: -42.45 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -73.70 3.10 -70.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850542068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.978 kcal (2) G-P(sol) polarization free energy of solvation -73.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds