Wall clock time and date at job start Tue Mar 31 2020 18:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47081 * 2 1 4 4 N 1.29926 * 125.38133 * 89.99717 * 3 2 1 5 5 C 1.36069 * 108.47886 * 179.97438 * 4 3 2 6 6 C 1.47419 * 126.44954 * 179.97438 * 5 4 3 7 7 O 1.21611 * 120.00434 * 186.97155 * 6 5 4 8 8 N 1.34780 * 119.99807 * 6.97902 * 6 5 4 9 9 C 1.47081 * 120.87902 * 176.14703 * 8 6 5 10 10 C 1.53237 * 108.52154 * 231.19863 * 9 8 6 11 11 N 1.46895 * 109.34219 * 306.17506 * 10 9 8 12 12 C 1.46903 * 111.00179 * 187.25205 * 11 10 9 13 13 C 1.53944 * 113.73979 * 273.73668 * 12 11 10 14 14 N 1.47808 * 86.03587 * 222.08200 * 13 12 11 15 15 C 1.36938 * 134.45564 * 204.64061 * 14 13 12 16 16 H 1.07998 * 120.00059 * 179.87229 * 15 14 13 17 17 C 1.38813 * 119.99901 * 359.87459 * 15 14 13 18 18 N 1.31611 * 120.00210 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99846 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47101 * 59.99580 * 19 17 15 21 21 H 1.48493 * 109.47057 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46953 * 299.99676 * 19 17 15 23 23 C 1.47578 * 91.05025 * 24.55249 * 14 13 12 24 24 C 1.46899 * 111.27210 * 63.09852 * 11 10 9 25 25 C 1.47081 * 120.88427 * 356.15995 * 8 6 5 26 26 C 1.36086 * 107.10228 * 0.26427 * 5 4 3 27 27 O 1.34050 * 125.37423 * 269.95853 * 3 2 1 28 28 H 1.09000 * 109.47328 * 300.00027 * 1 2 3 29 29 H 1.08998 * 109.47127 * 60.00430 * 1 2 3 30 30 H 1.09002 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47328 * 239.99973 * 2 1 3 32 32 H 1.08998 * 109.47127 * 119.99570 * 2 1 3 33 33 H 1.09004 * 109.62787 * 111.48941 * 9 8 6 34 34 H 1.09001 * 109.63163 * 350.91555 * 9 8 6 35 35 H 1.08999 * 109.49303 * 186.20989 * 10 9 8 36 36 H 1.09008 * 109.49005 * 66.13152 * 10 9 8 37 37 H 1.09002 * 112.94141 * 45.32998 * 12 11 10 38 38 H 1.09001 * 113.77189 * 336.35005 * 13 12 11 39 39 H 1.09002 * 113.76717 * 107.74451 * 13 12 11 40 40 H 0.97001 * 120.00687 * 180.02562 * 18 17 15 41 41 H 1.09002 * 113.76885 * 221.15244 * 23 14 13 42 42 H 1.08997 * 113.87169 * 89.76693 * 23 14 13 43 43 H 1.09001 * 109.48999 * 56.85612 * 24 11 10 44 44 H 1.09000 * 109.49330 * 176.93521 * 24 11 10 45 45 H 1.08995 * 109.62767 * 248.51041 * 25 8 6 46 46 H 1.08997 * 109.62286 * 9.09250 * 25 8 6 47 47 H 1.07999 * 126.52882 * 179.73436 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2831 2.1301 1.0593 5 6 2.7176 3.3574 0.6637 6 6 3.1115 4.4726 1.5436 7 8 3.3622 5.5634 1.0678 8 7 3.1939 4.2834 2.8755 9 6 3.6656 5.3574 3.7628 10 6 4.7758 4.7969 4.6580 11 7 4.2865 3.5939 5.3445 12 6 5.2584 3.1243 6.3409 13 6 6.3361 2.1893 5.7627 14 7 6.1442 1.3806 6.9850 15 6 6.9243 0.4978 7.6831 16 1 6.5398 0.0259 8.5752 17 6 8.2093 0.2095 7.2442 18 7 8.6777 0.7842 6.1568 19 14 9.2737 -0.9942 8.1969 20 1 8.6042 -2.3189 8.2418 21 1 10.5914 -1.1285 7.5256 22 1 9.4713 -0.4924 9.5805 23 6 4.7760 1.9079 7.1519 24 6 3.9586 2.5297 4.3865 25 6 2.8149 2.9974 3.4803 26 6 2.7139 3.3637 -0.6971 27 8 2.2918 2.1522 -1.0930 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8402 5.7107 4.3809 34 1 4.0575 6.1805 3.1652 35 1 5.0611 5.5464 5.3962 36 1 5.6411 4.5401 4.0467 37 1 5.6601 3.9300 6.9553 38 1 6.0320 1.6813 4.8475 39 1 7.3220 2.6483 5.6885 40 1 9.5755 0.5826 5.8498 41 1 4.5186 2.1426 8.1847 42 1 4.0113 1.3182 6.6465 43 1 4.8352 2.3046 3.7790 44 1 3.6512 1.6350 4.9278 45 1 1.9078 3.1239 4.0712 46 1 2.6444 2.2601 2.6958 47 1 2.9991 4.1858 -1.3369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941384073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:25 Heat of formation + Delta-G solvation = 77.764648 kcal Electronic energy + Delta-G solvation = -29448.337395 eV Core-core repulsion = 25442.974451 eV Total energy + Delta-G solvation = -4005.362944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.75306 -40.12153 -38.77680 -36.56052 -35.42758 -34.33907 -33.57511 -31.84726 -30.95302 -29.81555 -28.07018 -26.41507 -24.83225 -24.79122 -24.33897 -23.49542 -22.46798 -21.72673 -20.89179 -19.54452 -18.59848 -17.50184 -17.13698 -16.93887 -16.71755 -16.11443 -15.38117 -15.15298 -15.03291 -14.94613 -14.81094 -14.67266 -14.18790 -13.93142 -13.69127 -13.62025 -13.13328 -12.98230 -12.40355 -12.26415 -12.20583 -12.19442 -11.75836 -11.65203 -11.53295 -11.48655 -11.18681 -11.11798 -10.82856 -10.72588 -10.54933 -10.39105 -10.13952 -9.88780 -9.71440 -9.47068 -9.31448 -8.78022 -8.62244 -7.74648 -6.83369 -5.75088 -3.07674 0.87307 1.72071 2.26735 2.86876 3.16134 3.39755 3.43559 3.45100 3.51592 4.20958 4.38340 4.45374 4.51697 4.69746 4.72582 4.89686 5.09005 5.18706 5.24778 5.27361 5.28966 5.37768 5.43420 5.45693 5.46995 5.52374 5.53662 5.55691 5.72782 5.75459 5.81159 5.93778 6.02542 6.14252 6.23791 6.36962 6.41431 6.59481 6.66756 6.67857 7.04592 7.18016 7.23446 7.40257 7.46725 7.56938 7.67611 7.99341 8.03912 9.05340 9.72126 10.61761 11.41518 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.003010 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.418465 B = 9300.169206 C =10486.115576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.031 4.031 3 C 0.203 3.797 4 N -0.455 5.455 5 C -0.063 4.063 6 C 0.599 3.401 7 O -0.547 6.547 8 N -0.589 5.589 9 C 0.117 3.883 10 C 0.043 3.957 11 N -0.530 5.530 12 C 0.034 3.966 13 C 0.133 3.867 14 N -0.609 5.609 15 C -0.221 4.221 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.127 3.873 24 C 0.041 3.959 25 C 0.072 3.928 26 C 0.010 3.990 27 O -0.195 6.195 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.098 0.902 38 H 0.030 0.970 39 H 0.068 0.932 40 H 0.253 0.747 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.149 0.851 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.885 3.354 -14.391 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.069 4.069 3 C -0.005 4.005 4 N -0.185 5.185 5 C -0.182 4.182 6 C 0.387 3.613 7 O -0.425 6.425 8 N -0.320 5.320 9 C -0.005 4.005 10 C -0.086 4.086 11 N -0.255 5.255 12 C -0.075 4.075 13 C 0.006 3.994 14 N -0.336 5.336 15 C -0.349 4.349 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.000 4.000 24 C -0.088 4.088 25 C -0.051 4.051 26 C -0.063 4.063 27 O -0.081 6.081 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.116 0.884 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.165 0.835 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -16.959 3.653 -13.707 22.109 hybrid contribution 1.614 -0.673 -0.487 1.815 sum -15.345 2.980 -14.194 21.114 Atomic orbital electron populations 1.21792 0.92796 1.03255 1.03033 1.20197 0.97037 0.83821 1.05844 1.26607 0.98416 0.97002 0.78455 1.70395 1.16896 1.02884 1.28324 1.21785 1.09345 0.94076 0.93032 1.16800 0.77446 0.85504 0.81595 1.90796 1.52012 1.24658 1.75071 1.47984 1.63253 1.15583 1.05157 1.21813 0.97420 0.89702 0.91581 1.22387 0.95618 0.93854 0.96721 1.62061 1.43342 1.05188 1.14895 1.24275 0.92428 0.96660 0.94093 1.22933 0.97251 0.89451 0.89757 1.45808 1.09807 1.51071 1.26899 1.18971 0.93938 1.17028 1.04994 0.90255 1.24781 0.97358 1.00524 0.97809 1.69816 1.17078 1.46067 1.23975 0.86203 0.79718 0.80828 0.79041 1.21192 1.21604 1.21064 1.22645 0.88953 0.91124 0.97246 1.22562 0.97266 0.95144 0.93800 1.23132 0.97047 0.85631 0.99253 1.25235 0.99018 0.86535 0.95549 1.84394 1.63439 1.22411 1.37821 0.91526 0.92185 0.90652 0.88566 0.86999 0.90641 0.89004 0.89619 0.94269 0.88394 0.95205 0.91414 0.93688 0.93726 0.94548 0.93851 0.89193 0.91412 0.83476 0.75315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 2 C -0.03 -0.18 6.56 -27.88 -0.18 -0.37 16 3 C 0.20 1.95 7.56 -13.08 -0.10 1.86 16 4 N -0.45 -5.44 7.70 -7.66 -0.06 -5.50 16 5 C -0.06 -0.81 6.74 -83.02 -0.56 -1.37 16 6 C 0.60 8.91 7.70 -12.52 -0.10 8.81 16 7 O -0.55 -9.08 16.37 5.27 0.09 -9.00 16 8 N -0.59 -8.49 3.01 -173.73 -0.52 -9.01 16 9 C 0.12 1.58 6.59 -3.60 -0.02 1.55 16 10 C 0.04 0.63 5.61 -3.70 -0.02 0.61 16 11 N -0.53 -8.64 4.76 -228.25 -1.09 -9.72 16 12 C 0.03 0.66 4.03 -69.93 -0.28 0.38 16 13 C 0.13 3.18 6.81 -2.84 -0.02 3.16 16 14 N -0.61 -15.85 3.70 -177.90 -0.66 -16.50 16 15 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 16 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 18 N -0.92 -27.78 11.39 55.49 0.63 -27.14 16 19 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.13 2.64 8.42 -2.97 -0.03 2.62 16 24 C 0.04 0.65 4.47 -3.70 -0.02 0.64 16 25 C 0.07 1.00 6.46 -3.60 -0.02 0.97 16 26 C 0.01 0.10 11.95 29.96 0.36 0.46 16 27 O -0.19 -1.88 10.73 6.50 0.07 -1.81 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.23 7.08 -51.93 -0.37 0.86 16 35 H 0.09 1.14 8.04 -51.93 -0.42 0.72 16 36 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.10 1.88 8.04 -51.93 -0.42 1.46 16 38 H 0.03 0.74 5.65 -51.93 -0.29 0.45 16 39 H 0.07 1.82 7.17 -51.93 -0.37 1.45 16 40 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.74 6.22 -51.93 -0.32 0.41 16 43 H 0.04 0.80 6.45 -51.93 -0.33 0.46 16 44 H 0.09 1.49 6.06 -51.93 -0.31 1.18 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.15 2.01 3.76 -75.15 -0.28 1.73 16 47 H 0.23 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -34.21 373.46 -8.71 -42.92 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.90 Total: 0.68 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -0.88 Total: 12.15 kcal Atomic # 7 Polarization: -66.19 SS G_CDS: -1.69 Total: -67.88 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.16 Total: -10.81 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.21 -8.71 -42.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941384073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.681 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds