Wall clock time and date at job start Tue Mar 31 2020 18:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47081 * 2 1 4 4 N 1.29926 * 125.38133 * 89.99717 * 3 2 1 5 5 C 1.36069 * 108.47886 * 179.97438 * 4 3 2 6 6 C 1.47419 * 126.44954 * 179.97438 * 5 4 3 7 7 O 1.21611 * 120.00434 * 186.97155 * 6 5 4 8 8 N 1.34780 * 119.99807 * 6.97902 * 6 5 4 9 9 C 1.47081 * 120.87902 * 176.14703 * 8 6 5 10 10 C 1.53237 * 108.52154 * 231.19863 * 9 8 6 11 11 N 1.46895 * 109.34219 * 306.17506 * 10 9 8 12 12 C 1.46903 * 111.00179 * 187.25205 * 11 10 9 13 13 C 1.53944 * 113.73979 * 273.73668 * 12 11 10 14 14 N 1.47808 * 86.03587 * 222.08200 * 13 12 11 15 15 C 1.36938 * 134.45564 * 204.64061 * 14 13 12 16 16 H 1.07998 * 120.00059 * 179.87229 * 15 14 13 17 17 C 1.38813 * 119.99901 * 359.87459 * 15 14 13 18 18 N 1.31611 * 120.00210 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99846 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47101 * 59.99580 * 19 17 15 21 21 H 1.48493 * 109.47057 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46953 * 299.99676 * 19 17 15 23 23 C 1.47578 * 91.05025 * 24.55249 * 14 13 12 24 24 C 1.46899 * 111.27210 * 63.09852 * 11 10 9 25 25 C 1.47081 * 120.88427 * 356.15995 * 8 6 5 26 26 C 1.36086 * 107.10228 * 0.26427 * 5 4 3 27 27 O 1.34050 * 125.37423 * 269.95853 * 3 2 1 28 28 H 1.09000 * 109.47328 * 300.00027 * 1 2 3 29 29 H 1.08998 * 109.47127 * 60.00430 * 1 2 3 30 30 H 1.09002 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47328 * 239.99973 * 2 1 3 32 32 H 1.08998 * 109.47127 * 119.99570 * 2 1 3 33 33 H 1.09004 * 109.62787 * 111.48941 * 9 8 6 34 34 H 1.09001 * 109.63163 * 350.91555 * 9 8 6 35 35 H 1.08999 * 109.49303 * 186.20989 * 10 9 8 36 36 H 1.09008 * 109.49005 * 66.13152 * 10 9 8 37 37 H 1.09002 * 112.94141 * 45.32998 * 12 11 10 38 38 H 1.09001 * 113.77189 * 336.35005 * 13 12 11 39 39 H 1.09002 * 113.76717 * 107.74451 * 13 12 11 40 40 H 0.97001 * 120.00687 * 180.02562 * 18 17 15 41 41 H 1.09002 * 113.76885 * 221.15244 * 23 14 13 42 42 H 1.08997 * 113.87169 * 89.76693 * 23 14 13 43 43 H 1.09001 * 109.48999 * 56.85612 * 24 11 10 44 44 H 1.09000 * 109.49330 * 176.93521 * 24 11 10 45 45 H 1.08995 * 109.62767 * 248.51041 * 25 8 6 46 46 H 1.08997 * 109.62286 * 9.09250 * 25 8 6 47 47 H 1.07999 * 126.52882 * 179.73436 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2831 2.1301 1.0593 5 6 2.7176 3.3574 0.6637 6 6 3.1115 4.4726 1.5436 7 8 3.3622 5.5634 1.0678 8 7 3.1939 4.2834 2.8755 9 6 3.6656 5.3574 3.7628 10 6 4.7758 4.7969 4.6580 11 7 4.2865 3.5939 5.3445 12 6 5.2584 3.1243 6.3409 13 6 6.3361 2.1893 5.7627 14 7 6.1442 1.3806 6.9850 15 6 6.9243 0.4978 7.6831 16 1 6.5398 0.0259 8.5752 17 6 8.2093 0.2095 7.2442 18 7 8.6777 0.7842 6.1568 19 14 9.2737 -0.9942 8.1969 20 1 8.6042 -2.3189 8.2418 21 1 10.5914 -1.1285 7.5256 22 1 9.4713 -0.4924 9.5805 23 6 4.7760 1.9079 7.1519 24 6 3.9586 2.5297 4.3865 25 6 2.8149 2.9974 3.4803 26 6 2.7139 3.3637 -0.6971 27 8 2.2918 2.1522 -1.0930 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8402 5.7107 4.3809 34 1 4.0575 6.1805 3.1652 35 1 5.0611 5.5464 5.3962 36 1 5.6411 4.5401 4.0467 37 1 5.6601 3.9300 6.9553 38 1 6.0320 1.6813 4.8475 39 1 7.3220 2.6483 5.6885 40 1 9.5755 0.5826 5.8498 41 1 4.5186 2.1426 8.1847 42 1 4.0113 1.3182 6.6465 43 1 4.8352 2.3046 3.7790 44 1 3.6512 1.6350 4.9278 45 1 1.9078 3.1239 4.0712 46 1 2.6444 2.2601 2.6958 47 1 2.9991 4.1858 -1.3369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941384073.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:25 Heat of formation + Delta-G solvation = 52.667247 kcal Electronic energy + Delta-G solvation = -29449.425700 eV Core-core repulsion = 25442.974451 eV Total energy + Delta-G solvation = -4006.451249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.55912 -41.38700 -40.25866 -37.98898 -36.27402 -35.17638 -34.82917 -33.76270 -32.18103 -30.61437 -29.76188 -27.96605 -26.64742 -25.55404 -25.37176 -24.69003 -24.14834 -22.67553 -21.95363 -20.77654 -20.00154 -18.79451 -18.56886 -17.95898 -17.87011 -17.23359 -16.95117 -16.71893 -16.33880 -16.14588 -15.74314 -15.67971 -15.50743 -15.38980 -14.81503 -14.59834 -14.37620 -13.87208 -13.81119 -13.63258 -13.51276 -13.42344 -13.17536 -12.86190 -12.70594 -12.61448 -12.48287 -12.41566 -12.29153 -12.17422 -12.02228 -11.87932 -11.76557 -11.54698 -11.39750 -10.85368 -10.76468 -10.17954 -9.79757 -9.26863 -8.87751 -7.91709 -5.26361 0.02170 0.86283 1.43580 1.47525 1.52447 1.53629 1.82906 2.11813 2.44110 2.68265 2.89718 3.27772 3.43924 3.47785 3.73755 3.85054 3.90004 4.00934 4.13565 4.20901 4.26014 4.26358 4.33403 4.40090 4.43056 4.47319 4.56085 4.58921 4.66719 4.76414 4.81248 4.85370 4.92022 4.97257 5.01775 5.05854 5.06549 5.20227 5.26316 5.35639 5.36060 5.46229 5.61397 5.88384 6.02288 6.11509 6.23302 6.44352 6.88341 6.92730 7.58603 8.54203 9.24276 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.003010 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.418465 B = 9300.169206 C =10486.115576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.032 4.032 3 C 0.209 3.791 4 N -0.479 5.479 5 C -0.099 4.099 6 C 0.596 3.404 7 O -0.571 6.571 8 N -0.595 5.595 9 C 0.122 3.878 10 C 0.045 3.955 11 N -0.517 5.517 12 C 0.063 3.937 13 C 0.134 3.866 14 N -0.638 5.638 15 C -0.234 4.234 16 H 0.087 0.913 17 C -0.069 4.069 18 N -0.957 5.957 19 Si 0.981 3.019 20 H -0.275 1.275 21 H -0.296 1.296 22 H -0.274 1.274 23 C 0.130 3.870 24 C 0.048 3.952 25 C 0.083 3.917 26 C 0.030 3.970 27 O -0.191 6.191 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.016 0.984 37 H 0.105 0.895 38 H 0.018 0.982 39 H 0.029 0.971 40 H 0.247 0.753 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.015 0.985 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.155 0.845 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.622 2.864 -14.474 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 C 0.000 4.000 4 N -0.209 5.209 5 C -0.217 4.217 6 C 0.385 3.615 7 O -0.452 6.452 8 N -0.326 5.326 9 C 0.000 4.000 10 C -0.084 4.084 11 N -0.241 5.241 12 C -0.046 4.046 13 C 0.007 3.993 14 N -0.365 5.365 15 C -0.363 4.363 16 H 0.105 0.895 17 C -0.262 4.262 18 N -0.606 5.606 19 Si 0.809 3.191 20 H -0.201 1.201 21 H -0.222 1.222 22 H -0.200 1.200 23 C 0.005 3.995 24 C -0.081 4.081 25 C -0.039 4.039 26 C -0.044 4.044 27 O -0.077 6.077 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.035 0.965 37 H 0.123 0.877 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.033 0.967 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.171 0.829 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -18.746 3.171 -13.767 23.473 hybrid contribution 2.091 -0.535 -0.533 2.223 sum -16.655 2.636 -14.300 22.109 Atomic orbital electron populations 1.21774 0.91869 1.04339 1.02440 1.20463 0.97669 0.81742 1.07080 1.27338 0.96935 0.97815 0.77862 1.70238 1.18160 1.02965 1.29520 1.21679 1.11934 0.94284 0.93842 1.17077 0.76873 0.85794 0.81769 1.90767 1.53247 1.25707 1.75438 1.48098 1.63258 1.15814 1.05425 1.21815 0.97395 0.89429 0.91381 1.22468 0.95420 0.93462 0.97059 1.62118 1.41597 1.05569 1.14815 1.23872 0.90885 0.95899 0.93958 1.22822 0.96816 0.90449 0.89215 1.46184 1.12002 1.50983 1.27362 1.19424 0.94537 1.16966 1.05364 0.89530 1.25671 0.98834 1.02677 0.98998 1.70034 1.17001 1.47748 1.25790 0.85112 0.77388 0.78789 0.77821 1.20136 1.22218 1.19987 1.22776 0.87008 0.91203 0.98480 1.22492 0.96987 0.95093 0.93529 1.23075 0.96110 0.85759 0.98995 1.25725 0.96758 0.86958 0.94982 1.84438 1.63271 1.22250 1.37760 0.92793 0.92078 0.88728 0.86351 0.86705 0.88865 0.88876 0.87648 0.96522 0.87706 0.96483 0.95272 0.94452 0.92188 0.93179 0.96717 0.89616 0.90250 0.82937 0.72766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 71.98 0.71 -0.46 16 2 C -0.03 -0.32 6.56 29.85 0.20 -0.12 16 3 C 0.21 3.74 7.56 88.39 0.67 4.41 16 4 N -0.48 -11.14 7.70 -293.04 -2.26 -13.40 16 5 C -0.10 -2.49 6.74 40.41 0.27 -2.22 16 6 C 0.60 17.58 7.70 86.66 0.67 18.25 16 7 O -0.57 -18.85 16.37 -4.07 -0.07 -18.92 16 8 N -0.60 -16.87 3.01 -821.81 -2.47 -19.34 16 9 C 0.12 3.15 6.59 86.35 0.57 3.72 16 10 C 0.04 1.28 5.61 86.38 0.48 1.77 16 11 N -0.52 -16.43 4.76 -876.04 -4.17 -20.60 16 12 C 0.06 2.42 4.03 46.67 0.19 2.61 16 13 C 0.13 6.63 6.81 86.44 0.59 7.22 16 14 N -0.64 -33.51 3.70 -716.75 -2.65 -36.17 16 15 C -0.23 -13.41 10.70 84.03 0.90 -12.51 16 16 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 17 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 18 N -0.96 -59.43 11.39 21.65 0.25 -59.19 16 19 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 C 0.13 5.30 8.42 86.48 0.73 6.03 16 24 C 0.05 1.53 4.47 86.38 0.39 1.91 16 25 C 0.08 2.25 6.46 86.35 0.56 2.80 16 26 C 0.03 0.57 11.95 67.32 0.80 1.37 16 27 O -0.19 -3.37 10.73 0.33 0.00 -3.37 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.09 2.43 7.08 -2.39 -0.02 2.41 16 35 H 0.11 2.63 8.04 -2.39 -0.02 2.61 16 36 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.10 3.91 8.04 -2.39 -0.02 3.89 16 38 H 0.02 0.90 5.65 -2.39 -0.01 0.89 16 39 H 0.03 1.64 7.17 -2.39 -0.02 1.63 16 40 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.05 1.94 6.22 -2.39 -0.01 1.93 16 43 H 0.01 0.56 6.45 -2.39 -0.02 0.54 16 44 H 0.09 2.82 6.06 -2.39 -0.01 2.80 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.15 4.11 3.76 -48.23 -0.18 3.93 16 47 H 0.26 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -75.24 373.46 -0.33 -75.58 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.82 Total: 15.80 kcal Atomic # 6 Polarization: 23.04 SS G_CDS: 8.19 Total: 31.23 kcal Atomic # 7 Polarization: -137.39 SS G_CDS: -11.30 Total: -148.69 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.06 Total: -22.29 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -75.24 -0.33 -75.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941384073.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.243 kcal (2) G-P(sol) polarization free energy of solvation -75.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds