Wall clock time and date at job start Tue Mar 31 2020 18:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50691 * 109.47338 * 2 1 4 4 N 1.33320 * 126.11093 * 270.30033 * 3 2 1 5 5 C 1.30853 * 109.69113 * 180.13362 * 4 3 2 6 6 N 1.34502 * 109.16136 * 359.60718 * 5 4 3 7 7 H 0.96999 * 126.47628 * 180.24102 * 6 5 4 8 8 C 1.36668 * 126.10974 * 89.99419 * 3 2 1 9 9 C 1.46765 * 126.84128 * 0.02848 * 8 3 2 10 10 O 1.21686 * 119.99992 * 359.96895 * 9 8 3 11 11 N 1.34770 * 120.00178 * 179.97438 * 9 8 3 12 12 C 1.47088 * 125.62854 * 359.69050 * 11 9 8 13 13 C 1.54468 * 107.28948 * 178.91572 * 12 11 9 14 14 C 1.54368 * 102.95267 * 338.83523 * 13 12 11 15 15 C 1.47581 * 125.63348 * 179.97438 * 11 9 8 16 16 C 1.52358 * 110.39872 * 152.20172 * 14 13 12 17 17 N 1.47330 * 108.43553 * 73.53399 * 16 14 13 18 18 C 1.36940 * 121.08314 * 229.17602 * 17 16 14 19 19 H 1.07992 * 120.00301 * 153.76607 * 18 17 16 20 20 C 1.38815 * 119.99664 * 333.76979 * 18 17 16 21 21 N 1.31621 * 119.99766 * 344.15423 * 20 18 17 22 22 Si 1.86794 * 119.99988 * 164.15915 * 20 18 17 23 23 H 1.48495 * 109.47082 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.47088 * 119.99763 * 22 20 18 25 25 H 1.48504 * 109.47094 * 239.99572 * 22 20 18 26 26 C 1.47168 * 117.84165 * 49.14928 * 17 16 14 27 27 C 1.53273 * 108.55412 * 308.74181 * 26 17 16 28 28 O 1.41878 * 110.73038 * 276.13827 * 14 13 12 29 29 H 1.09002 * 109.47057 * 60.00433 * 1 2 3 30 30 H 1.09000 * 109.47255 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47240 * 300.00248 * 1 2 3 32 32 H 1.09001 * 109.47240 * 239.99752 * 2 1 3 33 33 H 1.08999 * 109.46862 * 120.00053 * 2 1 3 34 34 H 1.07996 * 125.42462 * 179.85724 * 5 4 3 35 35 H 1.08999 * 109.87810 * 298.46401 * 12 11 9 36 36 H 1.08993 * 109.87775 * 59.61850 * 12 11 9 37 37 H 1.09003 * 110.86505 * 220.39169 * 13 12 11 38 38 H 1.09000 * 110.53533 * 97.13131 * 13 12 11 39 39 H 1.09000 * 110.37543 * 322.11335 * 15 11 9 40 40 H 1.08998 * 110.37311 * 84.46020 * 15 11 9 41 41 H 1.09004 * 109.64580 * 193.21777 * 16 14 13 42 42 H 1.08997 * 109.64584 * 313.64124 * 16 14 13 43 43 H 0.97001 * 119.99660 * 179.97438 * 21 20 18 44 44 H 1.09009 * 109.62235 * 68.46141 * 26 17 16 45 45 H 1.09000 * 109.62448 * 189.02117 * 26 17 16 46 46 H 1.09002 * 109.51615 * 172.95656 * 27 26 17 47 47 H 1.08996 * 109.51663 * 293.11010 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2890 2.1634 -1.0770 5 6 2.7119 3.3451 -0.7072 6 7 2.7337 3.4057 0.6363 7 1 3.0024 4.1663 1.1750 8 6 2.3008 2.1801 1.1041 9 6 2.1577 1.7743 2.5073 10 8 1.7623 0.6562 2.7800 11 7 2.4642 2.6399 3.4937 12 6 2.9566 4.0132 3.3063 13 6 3.1427 4.6297 4.7103 14 6 2.2334 3.7522 5.5969 15 6 2.3667 2.3645 4.9403 16 6 2.7577 3.7197 7.0271 17 7 2.4721 5.0202 7.6577 18 6 3.4464 5.7095 8.3292 19 1 3.3859 6.7843 8.4150 20 6 4.5119 5.0266 8.8996 21 7 4.4410 3.7239 9.0738 22 14 6.0461 5.9564 9.4199 23 1 5.8755 7.4006 9.1193 24 1 6.2629 5.7771 10.8781 25 1 7.2195 5.4308 8.6767 26 6 1.1059 5.5549 7.5420 27 6 0.6949 5.5276 6.0657 28 8 0.8910 4.2085 5.5462 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9944 4.1460 -1.3744 35 1 3.9096 3.9963 2.7776 36 1 2.2275 4.5945 2.7420 37 1 2.8106 5.6678 4.7256 38 1 4.1826 4.5515 5.0275 39 1 1.4863 1.7579 5.1527 40 1 3.2681 1.8631 5.2928 41 1 2.2585 2.9257 7.5825 42 1 3.8330 3.5411 7.0193 43 1 5.1857 3.2466 9.4720 44 1 0.4210 4.9383 8.1242 45 1 1.0819 6.5807 7.9098 46 1 -0.3562 5.8020 5.9752 47 1 1.3060 6.2344 5.5044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972655112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:49 Heat of formation + Delta-G solvation = 16.731971 kcal Electronic energy + Delta-G solvation = -30243.744810 eV Core-core repulsion = 26235.735291 eV Total energy + Delta-G solvation = -4008.009519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.42900 -40.19546 -38.58803 -36.40010 -34.58772 -34.25235 -32.43151 -31.48257 -31.30827 -29.78370 -29.18789 -27.55351 -25.94766 -24.36251 -23.54965 -23.11275 -22.13901 -21.81357 -20.79051 -19.49969 -19.02475 -17.74795 -17.21644 -16.59413 -16.25701 -15.78979 -15.48624 -14.99310 -14.89600 -14.81900 -14.47264 -14.35287 -13.96847 -13.72496 -13.51649 -13.45762 -13.16176 -12.86861 -12.78664 -12.41493 -12.36644 -12.29585 -11.53832 -11.44098 -11.19564 -11.13645 -11.00673 -10.97395 -10.81366 -10.52323 -10.39335 -10.35459 -10.17462 -10.07777 -9.86255 -9.67089 -9.18332 -8.83282 -8.65536 -8.48454 -6.86360 -5.95369 -3.39137 1.19749 2.66873 2.70690 3.00330 3.25023 3.27817 3.33751 3.35309 4.03916 4.24263 4.32155 4.47399 4.58985 4.77788 4.92446 4.94322 4.98375 5.15247 5.27052 5.34318 5.44767 5.45173 5.48518 5.57123 5.64445 5.66637 5.74208 5.85042 5.93458 5.98282 6.01221 6.07160 6.15072 6.20588 6.25201 6.31611 6.33829 6.46115 6.50641 6.68333 6.93741 7.01099 7.31945 7.43656 7.61101 7.75606 7.79509 8.10644 8.20778 8.99424 9.62095 10.19529 11.13026 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.003081 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.265867 B = 9086.723737 C = 9304.479587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C 0.097 3.903 4 N -0.498 5.498 5 C 0.211 3.789 6 N -0.558 5.558 7 H 0.423 0.577 8 C -0.081 4.081 9 C 0.607 3.393 10 O -0.523 6.523 11 N -0.610 5.610 12 C 0.093 3.907 13 C -0.141 4.141 14 C 0.086 3.914 15 C 0.126 3.874 16 C 0.164 3.836 17 N -0.593 5.593 18 C -0.254 4.254 19 H 0.069 0.931 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.373 6.373 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.214 0.786 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.032 0.968 42 H 0.098 0.902 43 H 0.256 0.744 44 H 0.028 0.972 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 1.155 -16.279 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C -0.038 4.038 4 N -0.218 5.218 5 C -0.073 4.073 6 N -0.167 5.167 7 H 0.267 0.733 8 C -0.196 4.196 9 C 0.396 3.604 10 O -0.399 6.399 11 N -0.344 5.344 12 C -0.031 4.031 13 C -0.179 4.179 14 C 0.044 3.956 15 C 0.004 3.996 16 C 0.037 3.963 17 N -0.316 5.316 18 C -0.383 4.383 19 H 0.087 0.913 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.215 1.215 26 C -0.018 4.018 27 C -0.032 4.032 28 O -0.292 6.292 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.230 0.770 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.050 0.950 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.683 0.036 -16.942 17.337 hybrid contribution 1.351 1.667 1.443 2.586 sum -2.332 1.703 -15.498 15.765 Atomic orbital electron populations 1.21613 0.94411 1.01725 1.01778 1.20048 0.96226 0.88735 1.03633 1.21027 0.99188 0.97029 0.86525 1.70104 1.18458 1.02700 1.30530 1.25121 1.01874 0.98047 0.82303 1.43951 1.50135 1.13674 1.08922 0.73297 1.20937 1.15578 0.88131 0.94992 1.16431 0.77829 0.84165 0.81954 1.90819 1.47125 1.19405 1.82585 1.48438 1.65247 1.13605 1.07103 1.22254 0.97528 0.83099 1.00208 1.23029 1.02352 1.00721 0.91841 1.22711 0.82966 0.91698 0.98257 1.22162 1.03259 0.96591 0.77594 1.21132 1.01624 0.87955 0.85583 1.44073 1.04920 1.21087 1.61568 1.19199 1.00625 0.90318 1.28166 0.91283 1.25056 1.00286 0.95885 0.98301 1.70008 1.31197 1.06893 1.46526 0.86213 0.83153 0.79231 0.78116 1.20245 1.21573 1.21465 1.21598 0.88240 0.98518 0.93408 1.23110 0.99925 0.83992 0.96166 1.87667 1.26017 1.32320 1.83241 0.93000 0.92207 0.92520 0.90732 0.88759 0.76962 0.91881 0.91993 0.89235 0.89040 0.89295 0.89315 0.95007 0.88355 0.93408 0.95435 0.91845 0.89889 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 37.16 0.37 -1.25 16 2 C -0.05 -0.61 5.93 -27.89 -0.17 -0.78 16 3 C 0.10 1.34 6.40 -82.52 -0.53 0.81 16 4 N -0.50 -6.37 11.20 -10.65 -0.12 -6.49 16 5 C 0.21 1.98 13.01 -90.57 -1.18 0.80 16 6 N -0.56 -5.63 5.67 -10.79 -0.06 -5.69 16 7 H 0.42 3.31 5.13 -40.82 -0.21 3.10 16 8 C -0.08 -1.10 6.89 -82.14 -0.57 -1.67 16 9 C 0.61 9.64 7.82 -12.82 -0.10 9.54 16 10 O -0.52 -9.53 15.09 5.20 0.08 -9.45 16 11 N -0.61 -9.17 3.33 -172.27 -0.57 -9.74 16 12 C 0.09 1.13 5.14 -2.95 -0.02 1.12 16 13 C -0.14 -2.11 5.87 -25.24 -0.15 -2.26 16 14 C 0.09 1.51 0.84 -89.66 -0.08 1.44 16 15 C 0.13 2.10 6.08 -2.88 -0.02 2.09 16 16 C 0.16 3.57 4.05 -3.92 -0.02 3.55 16 17 N -0.59 -13.63 2.98 -172.25 -0.51 -14.14 16 18 C -0.25 -6.40 9.66 -15.06 -0.15 -6.54 16 19 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.09 4.98 -17.43 -0.09 0.01 16 21 N -0.90 -24.50 11.11 55.49 0.62 -23.89 16 22 Si 0.90 20.30 29.58 -169.99 -5.03 15.27 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.11 2.11 6.71 -3.54 -0.02 2.09 16 27 C 0.05 0.75 6.78 37.30 0.25 1.00 16 28 O -0.37 -6.78 10.28 -35.22 -0.36 -7.15 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.30 6.48 -51.93 -0.34 0.97 16 34 H 0.21 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.06 0.63 7.28 -51.93 -0.38 0.25 16 36 H 0.06 0.67 7.09 -51.93 -0.37 0.30 16 37 H 0.09 1.32 6.08 -51.93 -0.32 1.00 16 38 H 0.09 1.44 7.83 -51.93 -0.41 1.03 16 39 H 0.09 1.58 8.06 -51.93 -0.42 1.16 16 40 H 0.09 1.46 7.99 -51.93 -0.42 1.04 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 2.35 5.96 -51.93 -0.31 2.04 16 43 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 44 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 45 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.05 0.72 6.23 -51.93 -0.32 0.39 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -31.51 367.97 -9.69 -41.20 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.83 Total: 4.59 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -2.45 Total: 9.95 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.65 Total: -59.95 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.28 Total: -16.59 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.51 -9.69 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972655112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.927 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds