Wall clock time and date at job start Tue Mar 31 2020 18:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50691 * 109.47338 * 2 1 4 4 N 1.33320 * 126.11093 * 270.30033 * 3 2 1 5 5 C 1.30853 * 109.69113 * 180.13362 * 4 3 2 6 6 N 1.34502 * 109.16136 * 359.60718 * 5 4 3 7 7 H 0.96999 * 126.47628 * 180.24102 * 6 5 4 8 8 C 1.36668 * 126.10974 * 89.99419 * 3 2 1 9 9 C 1.46765 * 126.84128 * 0.02848 * 8 3 2 10 10 O 1.21686 * 119.99992 * 359.96895 * 9 8 3 11 11 N 1.34770 * 120.00178 * 179.97438 * 9 8 3 12 12 C 1.47088 * 125.62854 * 359.69050 * 11 9 8 13 13 C 1.54468 * 107.28948 * 178.91572 * 12 11 9 14 14 C 1.54368 * 102.95267 * 338.83523 * 13 12 11 15 15 C 1.47581 * 125.63348 * 179.97438 * 11 9 8 16 16 C 1.52358 * 110.39872 * 152.20172 * 14 13 12 17 17 N 1.47330 * 108.43553 * 73.53399 * 16 14 13 18 18 C 1.36940 * 121.08314 * 229.17602 * 17 16 14 19 19 H 1.07992 * 120.00301 * 153.76607 * 18 17 16 20 20 C 1.38815 * 119.99664 * 333.76979 * 18 17 16 21 21 N 1.31621 * 119.99766 * 344.15423 * 20 18 17 22 22 Si 1.86794 * 119.99988 * 164.15915 * 20 18 17 23 23 H 1.48495 * 109.47082 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.47088 * 119.99763 * 22 20 18 25 25 H 1.48504 * 109.47094 * 239.99572 * 22 20 18 26 26 C 1.47168 * 117.84165 * 49.14928 * 17 16 14 27 27 C 1.53273 * 108.55412 * 308.74181 * 26 17 16 28 28 O 1.41878 * 110.73038 * 276.13827 * 14 13 12 29 29 H 1.09002 * 109.47057 * 60.00433 * 1 2 3 30 30 H 1.09000 * 109.47255 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47240 * 300.00248 * 1 2 3 32 32 H 1.09001 * 109.47240 * 239.99752 * 2 1 3 33 33 H 1.08999 * 109.46862 * 120.00053 * 2 1 3 34 34 H 1.07996 * 125.42462 * 179.85724 * 5 4 3 35 35 H 1.08999 * 109.87810 * 298.46401 * 12 11 9 36 36 H 1.08993 * 109.87775 * 59.61850 * 12 11 9 37 37 H 1.09003 * 110.86505 * 220.39169 * 13 12 11 38 38 H 1.09000 * 110.53533 * 97.13131 * 13 12 11 39 39 H 1.09000 * 110.37543 * 322.11335 * 15 11 9 40 40 H 1.08998 * 110.37311 * 84.46020 * 15 11 9 41 41 H 1.09004 * 109.64580 * 193.21777 * 16 14 13 42 42 H 1.08997 * 109.64584 * 313.64124 * 16 14 13 43 43 H 0.97001 * 119.99660 * 179.97438 * 21 20 18 44 44 H 1.09009 * 109.62235 * 68.46141 * 26 17 16 45 45 H 1.09000 * 109.62448 * 189.02117 * 26 17 16 46 46 H 1.09002 * 109.51615 * 172.95656 * 27 26 17 47 47 H 1.08996 * 109.51663 * 293.11010 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2890 2.1634 -1.0770 5 6 2.7119 3.3451 -0.7072 6 7 2.7337 3.4057 0.6363 7 1 3.0024 4.1663 1.1750 8 6 2.3008 2.1801 1.1041 9 6 2.1577 1.7743 2.5073 10 8 1.7623 0.6562 2.7800 11 7 2.4642 2.6399 3.4937 12 6 2.9566 4.0132 3.3063 13 6 3.1427 4.6297 4.7103 14 6 2.2334 3.7522 5.5969 15 6 2.3667 2.3645 4.9403 16 6 2.7577 3.7197 7.0271 17 7 2.4721 5.0202 7.6577 18 6 3.4464 5.7095 8.3292 19 1 3.3859 6.7843 8.4150 20 6 4.5119 5.0266 8.8996 21 7 4.4410 3.7239 9.0738 22 14 6.0461 5.9564 9.4199 23 1 5.8755 7.4006 9.1193 24 1 6.2629 5.7771 10.8781 25 1 7.2195 5.4308 8.6767 26 6 1.1059 5.5549 7.5420 27 6 0.6949 5.5276 6.0657 28 8 0.8910 4.2085 5.5462 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9944 4.1460 -1.3744 35 1 3.9096 3.9963 2.7776 36 1 2.2275 4.5945 2.7420 37 1 2.8106 5.6678 4.7256 38 1 4.1826 4.5515 5.0275 39 1 1.4863 1.7579 5.1527 40 1 3.2681 1.8631 5.2928 41 1 2.2585 2.9257 7.5825 42 1 3.8330 3.5411 7.0193 43 1 5.1857 3.2466 9.4720 44 1 0.4210 4.9383 8.1242 45 1 1.0819 6.5807 7.9098 46 1 -0.3562 5.8020 5.9752 47 1 1.3060 6.2344 5.5044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972655112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:48 Heat of formation + Delta-G solvation = -3.386804 kcal Electronic energy + Delta-G solvation = -30244.617226 eV Core-core repulsion = 26235.735291 eV Total energy + Delta-G solvation = -4008.881935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.32589 -41.51526 -39.90596 -37.71587 -36.29925 -35.21328 -33.52701 -33.23458 -32.58358 -31.04863 -30.18400 -29.10895 -27.51949 -25.62527 -24.96998 -24.21161 -23.30238 -23.04709 -21.98887 -20.66359 -20.26392 -18.97271 -18.84679 -17.69363 -17.62573 -16.94650 -16.92413 -16.35152 -16.08467 -15.97211 -15.78650 -15.73708 -15.18499 -15.14358 -14.85317 -14.59700 -14.47147 -14.37545 -14.07717 -13.72838 -13.63918 -13.31650 -13.10733 -12.86763 -12.70262 -12.51031 -12.40272 -12.34265 -12.11447 -12.00267 -11.96517 -11.85114 -11.49624 -11.18925 -11.04510 -10.98081 -10.77518 -10.50313 -9.97729 -9.49433 -8.74008 -7.90184 -5.37093 0.22155 1.46038 1.49472 1.58738 1.63014 1.82277 2.05997 2.19027 2.47551 2.68180 3.21322 3.31134 3.41972 3.46193 3.58961 3.80268 3.89207 4.02434 4.06985 4.19250 4.21541 4.31779 4.35008 4.46448 4.49851 4.52801 4.55724 4.61514 4.67263 4.71233 4.75281 4.83916 4.93546 5.01135 5.06114 5.07351 5.12517 5.22931 5.24367 5.30907 5.49918 5.50965 5.62244 6.26995 6.28690 6.31902 6.37628 6.85988 6.94549 7.06150 7.74332 8.29324 9.16251 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.003081 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.265867 B = 9086.723737 C = 9304.479587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 C 0.089 3.911 4 N -0.529 5.529 5 C 0.239 3.761 6 N -0.548 5.548 7 H 0.435 0.565 8 C -0.104 4.104 9 C 0.604 3.396 10 O -0.559 6.559 11 N -0.611 5.611 12 C 0.097 3.903 13 C -0.133 4.133 14 C 0.094 3.906 15 C 0.130 3.870 16 C 0.175 3.825 17 N -0.608 5.608 18 C -0.256 4.256 19 H 0.076 0.924 20 C -0.048 4.048 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.263 1.263 24 H -0.299 1.299 25 H -0.289 1.289 26 C 0.103 3.897 27 C 0.053 3.947 28 O -0.383 6.383 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.266 0.734 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.083 0.917 41 H -0.009 1.009 42 H 0.074 0.926 43 H 0.250 0.750 44 H 0.011 0.989 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 3.927 -19.141 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.046 4.046 4 N -0.249 5.249 5 C -0.045 4.045 6 N -0.158 5.158 7 H 0.281 0.719 8 C -0.220 4.220 9 C 0.394 3.606 10 O -0.438 6.438 11 N -0.344 5.344 12 C -0.025 4.025 13 C -0.171 4.171 14 C 0.052 3.948 15 C 0.007 3.993 16 C 0.049 3.951 17 N -0.332 5.332 18 C -0.386 4.386 19 H 0.093 0.907 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.795 3.205 23 H -0.187 1.187 24 H -0.226 1.226 25 H -0.216 1.216 26 C -0.023 4.023 27 C -0.024 4.024 28 O -0.303 6.303 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.281 0.719 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.009 0.991 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.029 0.971 45 H 0.094 0.906 46 H 0.133 0.867 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.432 2.867 -19.812 20.311 hybrid contribution 1.206 0.834 2.343 2.764 sum -2.226 3.702 -17.469 17.995 Atomic orbital electron populations 1.21541 0.93841 1.02465 1.00889 1.20044 0.96720 0.88861 1.03247 1.21205 0.98860 0.97391 0.87108 1.70135 1.20231 1.04157 1.30369 1.26164 0.98158 0.97846 0.82297 1.43853 1.49736 1.12817 1.09352 0.71878 1.20540 1.18011 0.89971 0.93497 1.16764 0.77174 0.83737 0.82901 1.90793 1.48775 1.20961 1.83298 1.48422 1.65279 1.14770 1.05901 1.22390 0.99759 0.81427 0.98930 1.22911 1.00846 1.00733 0.92637 1.22375 0.83450 0.93065 0.95950 1.21927 1.02201 0.95938 0.79263 1.20842 0.99738 0.86624 0.87929 1.44330 1.06188 1.21077 1.61642 1.19536 1.00939 0.90782 1.27294 0.90651 1.25779 1.02993 0.96537 0.99062 1.70177 1.31674 1.08404 1.48044 0.85224 0.79723 0.78787 0.76803 1.18669 1.22622 1.21591 1.21794 0.86097 0.98545 0.95856 1.23182 1.02156 0.83521 0.93585 1.87670 1.26028 1.33478 1.83091 0.92409 0.90750 0.94627 0.89563 0.90573 0.71861 0.88850 0.89466 0.88238 0.90073 0.91139 0.89928 0.99059 0.90819 0.94066 0.97079 0.90617 0.86693 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.89 71.98 0.71 -2.30 16 2 C -0.05 -1.27 5.93 29.85 0.18 -1.09 16 3 C 0.09 2.35 6.40 41.96 0.27 2.62 16 4 N -0.53 -12.04 11.20 -187.60 -2.10 -14.14 16 5 C 0.24 3.43 13.01 180.33 2.35 5.77 16 6 N -0.55 -9.00 5.67 -188.04 -1.07 -10.07 16 7 H 0.44 4.79 5.13 -92.71 -0.48 4.31 16 8 C -0.10 -2.69 6.89 40.01 0.28 -2.42 16 9 C 0.60 19.07 7.82 86.47 0.68 19.75 16 10 O -0.56 -21.17 15.09 -4.30 -0.06 -21.23 16 11 N -0.61 -17.93 3.33 -817.17 -2.72 -20.65 16 12 C 0.10 2.10 5.14 86.77 0.45 2.54 16 13 C -0.13 -3.73 5.87 31.56 0.19 -3.55 16 14 C 0.09 3.31 0.84 -10.17 -0.01 3.30 16 15 C 0.13 4.49 6.08 86.54 0.53 5.02 16 16 C 0.18 7.98 4.05 86.01 0.35 8.33 16 17 N -0.61 -28.27 2.98 -698.87 -2.08 -30.35 16 18 C -0.26 -12.90 9.66 84.03 0.81 -12.08 16 19 H 0.08 3.65 7.88 -2.91 -0.02 3.62 16 20 C -0.05 -2.52 4.98 84.86 0.42 -2.10 16 21 N -0.94 -52.83 11.11 21.65 0.24 -52.59 16 22 Si 0.97 41.99 29.58 68.60 2.03 44.02 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 24 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 26 C 0.10 3.92 6.71 86.34 0.58 4.50 16 27 C 0.05 1.60 6.78 72.07 0.49 2.09 16 28 O -0.38 -13.54 10.28 -148.95 -1.53 -15.07 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 33 H 0.08 2.19 6.48 -2.39 -0.02 2.17 16 34 H 0.27 0.70 8.06 -2.91 -0.02 0.68 16 35 H 0.09 1.50 7.28 -2.39 -0.02 1.49 16 36 H 0.09 1.50 7.09 -2.39 -0.02 1.48 16 37 H 0.10 2.60 6.08 -2.39 -0.01 2.59 16 38 H 0.08 2.46 7.83 -2.39 -0.02 2.44 16 39 H 0.07 2.67 8.06 -2.39 -0.02 2.65 16 40 H 0.08 2.91 7.99 -2.39 -0.02 2.89 16 41 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 42 H 0.07 3.71 5.96 -2.39 -0.01 3.69 16 43 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 44 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 45 H 0.08 2.67 7.96 -2.39 -0.02 2.65 16 46 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 47 H 0.06 1.76 6.23 -2.39 -0.01 1.74 16 Total: -1.00 -71.96 367.97 1.48 -70.49 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.52 Total: 19.22 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 8.26 Total: 30.37 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -7.73 Total: -127.79 kcal Atomic # 8 Polarization: -34.71 SS G_CDS: -1.60 Total: -36.31 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -71.96 1.48 -70.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972655112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.099 kcal (2) G-P(sol) polarization free energy of solvation -71.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds