Wall clock time and date at job start Tue Mar 31 2020 18:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47022 * 2 1 4 4 N 1.33320 * 126.10733 * 90.02921 * 3 2 1 5 5 C 1.30855 * 109.68789 * 180.02562 * 4 3 2 6 6 N 1.34501 * 109.16481 * 0.23815 * 5 4 3 7 7 H 0.96993 * 126.47628 * 179.75863 * 6 5 4 8 8 C 1.36668 * 126.10699 * 270.02795 * 3 2 1 9 9 C 1.46761 * 126.84550 * 359.96320 * 8 3 2 10 10 O 1.21680 * 120.00121 * 0.02562 * 9 8 3 11 11 N 1.34780 * 119.99770 * 179.97438 * 9 8 3 12 12 C 1.47085 * 125.63261 * 0.02788 * 11 9 8 13 13 C 1.54460 * 107.29292 * 180.99925 * 12 11 9 14 14 C 1.54356 * 102.87784 * 21.49514 * 13 12 11 15 15 C 1.47570 * 125.62479 * 179.71880 * 11 9 8 16 16 C 1.52365 * 110.42367 * 207.61597 * 14 13 12 17 17 N 1.47334 * 108.41514 * 186.40326 * 16 14 13 18 18 C 1.36935 * 121.07923 * 229.19343 * 17 16 14 19 19 H 1.08002 * 120.00100 * 153.76416 * 18 17 16 20 20 C 1.38818 * 119.99947 * 333.75869 * 18 17 16 21 21 N 1.31614 * 120.00038 * 344.13495 * 20 18 17 22 22 Si 1.86802 * 119.99615 * 164.13639 * 20 18 17 23 23 H 1.48501 * 109.46959 * 90.00203 * 22 20 18 24 24 H 1.48494 * 109.46948 * 209.99986 * 22 20 18 25 25 H 1.48500 * 109.47209 * 330.00129 * 22 20 18 26 26 C 1.47169 * 117.83384 * 49.17031 * 17 16 14 27 27 C 1.53274 * 108.56977 * 308.76061 * 26 17 16 28 28 O 1.41883 * 110.75325 * 83.65641 * 14 13 12 29 29 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46838 * 299.99336 * 1 2 3 31 31 H 1.08998 * 109.47324 * 59.99681 * 1 2 3 32 32 H 1.09004 * 109.46619 * 240.00336 * 2 1 3 33 33 H 1.08998 * 109.47324 * 120.00319 * 2 1 3 34 34 H 1.07997 * 125.42153 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.87791 * 300.42367 * 12 11 9 36 36 H 1.08997 * 109.87533 * 61.57796 * 12 11 9 37 37 H 1.09005 * 110.73300 * 139.84186 * 13 12 11 38 38 H 1.09000 * 110.73492 * 262.96662 * 13 12 11 39 39 H 1.09008 * 110.37730 * 275.49959 * 15 11 9 40 40 H 1.08991 * 110.38006 * 37.85211 * 15 11 9 41 41 H 1.09000 * 109.67103 * 306.13505 * 16 14 13 42 42 H 1.09002 * 109.67644 * 66.63167 * 16 14 13 43 43 H 0.97005 * 119.99873 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.62154 * 68.49108 * 26 17 16 45 45 H 1.09001 * 109.61628 * 188.84967 * 26 17 16 46 46 H 1.09003 * 109.50773 * 172.93690 * 27 26 17 47 47 H 1.08998 * 109.51230 * 293.08277 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2947 2.1613 1.0771 5 6 2.7124 3.3450 0.7072 6 7 2.7279 3.4078 -0.6362 7 1 2.9918 4.1701 -1.1748 8 6 2.3002 2.1803 -1.1042 9 6 2.1569 1.7746 -2.5073 10 8 1.7618 0.6566 -2.7801 11 7 2.4620 2.6409 -3.4937 12 6 2.9475 4.0166 -3.3063 13 6 3.1366 4.6321 -4.7103 14 6 2.2277 3.7536 -5.5962 15 6 2.3701 2.3635 -4.9402 16 6 2.7503 3.7217 -7.0271 17 7 1.7728 3.0040 -7.8637 18 6 2.1671 2.0018 -8.7095 19 1 1.4717 1.2227 -8.9848 20 6 3.4606 1.9874 -9.2131 21 7 4.2059 3.0700 -9.1438 22 14 4.1434 0.4314 -9.9891 23 1 3.8428 0.4305 -11.4434 24 1 5.6137 0.3818 -9.7876 25 1 3.5163 -0.7551 -9.3534 26 6 0.3588 3.3988 -7.7604 27 6 -0.0405 3.4011 -6.2806 28 8 0.8845 4.2075 -5.5442 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.9953 4.1457 1.3745 35 1 2.2146 4.5948 -2.7437 36 1 3.8996 4.0044 -2.7757 37 1 2.8032 5.6697 -4.7248 38 1 4.1769 4.5581 -5.0272 39 1 3.2753 1.8668 -5.2897 40 1 1.4938 1.7518 -5.1545 41 1 2.8717 4.7401 -7.3962 42 1 3.7092 3.2042 -7.0561 43 1 5.1099 3.0597 -9.4954 44 1 0.2263 4.3973 -8.1769 45 1 -0.2604 2.6886 -8.3084 46 1 -1.0450 3.8109 -6.1753 47 1 -0.0205 2.3812 -5.8966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972655113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:52 Heat of formation + Delta-G solvation = 16.714544 kcal Electronic energy + Delta-G solvation = -30464.704949 eV Core-core repulsion = 26456.694674 eV Total energy + Delta-G solvation = -4008.010275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.41405 -40.18120 -38.48337 -36.40895 -34.55977 -34.24029 -32.41547 -31.65589 -31.29302 -29.31975 -29.24100 -27.65488 -25.97147 -24.31711 -23.39804 -23.29541 -22.26961 -21.40854 -20.98603 -19.41582 -18.93862 -17.88436 -17.03909 -16.62272 -16.29896 -15.81582 -15.37307 -14.95667 -14.86863 -14.79140 -14.43007 -14.29241 -13.94738 -13.66982 -13.56703 -13.44387 -13.27527 -12.91643 -12.77522 -12.37015 -12.21582 -11.98075 -11.56275 -11.42551 -11.28196 -11.14319 -10.98765 -10.92199 -10.80656 -10.53705 -10.46106 -10.34569 -10.16075 -10.02546 -9.80157 -9.64061 -9.17837 -8.78078 -8.61123 -8.42662 -6.82871 -5.92111 -3.34832 1.21825 2.69125 2.72165 3.04696 3.30793 3.31265 3.38770 3.41922 4.07708 4.25073 4.37277 4.47596 4.57163 4.75026 4.87202 4.96536 5.00664 5.22266 5.23639 5.31252 5.45464 5.49012 5.51085 5.58361 5.66268 5.72869 5.78766 5.87426 5.93426 6.01015 6.01427 6.10733 6.15737 6.22480 6.27126 6.35036 6.40964 6.48054 6.53559 6.71030 6.94881 7.02398 7.30414 7.48591 7.66149 7.76798 7.80658 8.15867 8.24441 9.03533 9.66083 10.22832 11.16599 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003465 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.234560 B = 8078.932993 C = 8473.559285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C 0.096 3.904 4 N -0.498 5.498 5 C 0.210 3.790 6 N -0.558 5.558 7 H 0.423 0.577 8 C -0.080 4.080 9 C 0.605 3.395 10 O -0.522 6.522 11 N -0.612 5.612 12 C 0.094 3.906 13 C -0.113 4.113 14 C 0.085 3.915 15 C 0.097 3.903 16 C 0.164 3.836 17 N -0.595 5.595 18 C -0.253 4.253 19 H 0.069 0.931 20 C 0.004 3.996 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.110 3.890 27 C 0.045 3.955 28 O -0.374 6.374 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.214 0.786 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.034 0.966 42 H 0.098 0.902 43 H 0.255 0.745 44 H 0.027 0.973 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.278 4.357 16.585 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.038 4.038 4 N -0.218 5.218 5 C -0.074 4.074 6 N -0.167 5.167 7 H 0.267 0.733 8 C -0.195 4.195 9 C 0.393 3.607 10 O -0.398 6.398 11 N -0.346 5.346 12 C -0.030 4.030 13 C -0.152 4.152 14 C 0.043 3.957 15 C -0.024 4.024 16 C 0.037 3.963 17 N -0.318 5.318 18 C -0.382 4.382 19 H 0.087 0.913 20 C -0.194 4.194 21 N -0.550 5.550 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.016 4.016 27 C -0.033 4.033 28 O -0.293 6.293 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.230 0.770 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.493 3.591 17.286 17.830 hybrid contribution 0.803 0.067 -1.599 1.790 sum -1.690 3.658 15.687 16.196 Atomic orbital electron populations 1.21609 0.94425 1.01733 1.01728 1.20050 0.96219 0.88756 1.03643 1.21024 0.99192 0.97063 0.86538 1.70104 1.18426 1.02723 1.30536 1.25113 1.02025 0.97994 0.82301 1.43933 1.50397 1.13481 1.08898 0.73341 1.20975 1.15491 0.88029 0.95044 1.16459 0.78017 0.84241 0.81959 1.90828 1.47008 1.19403 1.82544 1.48505 1.65400 1.13183 1.07469 1.22204 0.97790 0.83338 0.99661 1.22525 1.00684 1.00248 0.91718 1.22759 0.83566 0.91055 0.98304 1.22856 1.03661 0.98899 0.76999 1.21173 0.94589 0.97009 0.83503 1.44108 1.00783 1.40919 1.46030 1.19188 0.97086 1.00421 1.21477 0.91290 1.25017 0.98618 0.97051 0.98740 1.69990 1.09784 1.25822 1.49405 0.86290 0.78215 0.83092 0.79223 1.21269 1.21447 1.20289 1.21590 0.88042 0.98520 0.93495 1.23116 0.91658 0.94847 0.93674 1.87609 1.16586 1.52711 1.72393 0.92202 0.93009 0.92558 0.88759 0.90738 0.76971 0.91670 0.91838 0.88942 0.88541 0.89985 0.89514 0.94788 0.88397 0.93476 0.95496 0.91767 0.89825 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.89 37.16 0.37 -1.30 16 2 C -0.05 -0.64 5.93 -27.88 -0.17 -0.80 16 3 C 0.10 1.36 6.40 -82.52 -0.53 0.83 16 4 N -0.50 -6.43 11.20 -10.64 -0.12 -6.55 16 5 C 0.21 1.96 13.01 -90.57 -1.18 0.78 16 6 N -0.56 -5.58 5.67 -10.78 -0.06 -5.64 16 7 H 0.42 3.14 5.13 -40.82 -0.21 2.93 16 8 C -0.08 -1.11 6.89 -82.14 -0.57 -1.68 16 9 C 0.60 10.01 7.82 -12.81 -0.10 9.91 16 10 O -0.52 -10.09 15.08 5.21 0.08 -10.01 16 11 N -0.61 -9.52 3.33 -172.11 -0.57 -10.10 16 12 C 0.09 1.09 5.13 -2.96 -0.02 1.08 16 13 C -0.11 -1.51 6.11 -25.25 -0.15 -1.67 16 14 C 0.09 1.51 0.83 -89.51 -0.07 1.44 16 15 C 0.10 1.77 5.86 -2.74 -0.02 1.76 16 16 C 0.16 3.58 4.06 -3.91 -0.02 3.56 16 17 N -0.59 -14.11 2.99 -172.24 -0.51 -14.63 16 18 C -0.25 -6.61 9.66 -15.06 -0.15 -6.76 16 19 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 20 C 0.00 0.11 4.98 -17.43 -0.09 0.03 16 21 N -0.91 -24.78 11.11 55.49 0.62 -24.16 16 22 Si 0.90 21.04 29.58 -169.99 -5.03 16.02 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.11 2.22 6.71 -3.54 -0.02 2.19 16 27 C 0.04 0.79 6.79 37.30 0.25 1.04 16 28 O -0.37 -6.80 10.29 -35.22 -0.36 -7.16 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.37 6.48 -51.93 -0.34 1.04 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.07 0.66 7.10 -51.93 -0.37 0.29 16 36 H 0.06 0.58 7.27 -51.93 -0.38 0.20 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.10 1.22 8.00 -51.93 -0.42 0.81 16 39 H 0.08 1.60 7.82 -51.92 -0.41 1.19 16 40 H 0.09 1.77 6.03 -51.93 -0.31 1.45 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 2.36 5.95 -51.93 -0.31 2.05 16 43 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 46 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.05 0.89 6.27 -51.93 -0.33 0.56 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -32.38 368.06 -9.70 -42.08 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.83 Total: 4.21 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -2.45 Total: 10.40 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.65 Total: -61.07 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.28 Total: -17.17 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.38 -9.70 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972655113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.791 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds