Wall clock time and date at job start Tue Mar 31 2020 18:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47022 * 2 1 4 4 N 1.33320 * 126.10733 * 90.02921 * 3 2 1 5 5 C 1.30855 * 109.68789 * 180.02562 * 4 3 2 6 6 N 1.34501 * 109.16481 * 0.23815 * 5 4 3 7 7 H 0.96993 * 126.47628 * 179.75863 * 6 5 4 8 8 C 1.36668 * 126.10699 * 270.02795 * 3 2 1 9 9 C 1.46761 * 126.84550 * 359.96320 * 8 3 2 10 10 O 1.21680 * 120.00121 * 0.02562 * 9 8 3 11 11 N 1.34780 * 119.99770 * 179.97438 * 9 8 3 12 12 C 1.47085 * 125.63261 * 0.02788 * 11 9 8 13 13 C 1.54460 * 107.29292 * 180.99925 * 12 11 9 14 14 C 1.54356 * 102.87784 * 21.49514 * 13 12 11 15 15 C 1.47570 * 125.62479 * 179.71880 * 11 9 8 16 16 C 1.52365 * 110.42367 * 207.61597 * 14 13 12 17 17 N 1.47334 * 108.41514 * 186.40326 * 16 14 13 18 18 C 1.36935 * 121.07923 * 229.19343 * 17 16 14 19 19 H 1.08002 * 120.00100 * 153.76416 * 18 17 16 20 20 C 1.38818 * 119.99947 * 333.75869 * 18 17 16 21 21 N 1.31614 * 120.00038 * 344.13495 * 20 18 17 22 22 Si 1.86802 * 119.99615 * 164.13639 * 20 18 17 23 23 H 1.48501 * 109.46959 * 90.00203 * 22 20 18 24 24 H 1.48494 * 109.46948 * 209.99986 * 22 20 18 25 25 H 1.48500 * 109.47209 * 330.00129 * 22 20 18 26 26 C 1.47169 * 117.83384 * 49.17031 * 17 16 14 27 27 C 1.53274 * 108.56977 * 308.76061 * 26 17 16 28 28 O 1.41883 * 110.75325 * 83.65641 * 14 13 12 29 29 H 1.09001 * 109.46837 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46838 * 299.99336 * 1 2 3 31 31 H 1.08998 * 109.47324 * 59.99681 * 1 2 3 32 32 H 1.09004 * 109.46619 * 240.00336 * 2 1 3 33 33 H 1.08998 * 109.47324 * 120.00319 * 2 1 3 34 34 H 1.07997 * 125.42153 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.87791 * 300.42367 * 12 11 9 36 36 H 1.08997 * 109.87533 * 61.57796 * 12 11 9 37 37 H 1.09005 * 110.73300 * 139.84186 * 13 12 11 38 38 H 1.09000 * 110.73492 * 262.96662 * 13 12 11 39 39 H 1.09008 * 110.37730 * 275.49959 * 15 11 9 40 40 H 1.08991 * 110.38006 * 37.85211 * 15 11 9 41 41 H 1.09000 * 109.67103 * 306.13505 * 16 14 13 42 42 H 1.09002 * 109.67644 * 66.63167 * 16 14 13 43 43 H 0.97005 * 119.99873 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.62154 * 68.49108 * 26 17 16 45 45 H 1.09001 * 109.61628 * 188.84967 * 26 17 16 46 46 H 1.09003 * 109.50773 * 172.93690 * 27 26 17 47 47 H 1.08998 * 109.51230 * 293.08277 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2947 2.1613 1.0771 5 6 2.7124 3.3450 0.7072 6 7 2.7279 3.4078 -0.6362 7 1 2.9918 4.1701 -1.1748 8 6 2.3002 2.1803 -1.1042 9 6 2.1569 1.7746 -2.5073 10 8 1.7618 0.6566 -2.7801 11 7 2.4620 2.6409 -3.4937 12 6 2.9475 4.0166 -3.3063 13 6 3.1366 4.6321 -4.7103 14 6 2.2277 3.7536 -5.5962 15 6 2.3701 2.3635 -4.9402 16 6 2.7503 3.7217 -7.0271 17 7 1.7728 3.0040 -7.8637 18 6 2.1671 2.0018 -8.7095 19 1 1.4717 1.2227 -8.9848 20 6 3.4606 1.9874 -9.2131 21 7 4.2059 3.0700 -9.1438 22 14 4.1434 0.4314 -9.9891 23 1 3.8428 0.4305 -11.4434 24 1 5.6137 0.3818 -9.7876 25 1 3.5163 -0.7551 -9.3534 26 6 0.3588 3.3988 -7.7604 27 6 -0.0405 3.4011 -6.2806 28 8 0.8845 4.2075 -5.5442 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.9953 4.1457 1.3745 35 1 2.2146 4.5948 -2.7437 36 1 3.8996 4.0044 -2.7757 37 1 2.8032 5.6697 -4.7248 38 1 4.1769 4.5581 -5.0272 39 1 3.2753 1.8668 -5.2897 40 1 1.4938 1.7518 -5.1545 41 1 2.8717 4.7401 -7.3962 42 1 3.7092 3.2042 -7.0561 43 1 5.1099 3.0597 -9.4954 44 1 0.2263 4.3973 -8.1769 45 1 -0.2604 2.6886 -8.3084 46 1 -1.0450 3.8109 -6.1753 47 1 -0.0205 2.3812 -5.8966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972655113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:51 Heat of formation + Delta-G solvation = -4.459033 kcal Electronic energy + Delta-G solvation = -30465.623105 eV Core-core repulsion = 26456.694674 eV Total energy + Delta-G solvation = -4008.928430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.32685 -41.52823 -39.85053 -37.75056 -36.31706 -35.22807 -33.57438 -33.25788 -32.74873 -30.59424 -30.28359 -29.23757 -27.60429 -25.54460 -25.06138 -24.37703 -23.31141 -22.70854 -22.20377 -20.50076 -20.37185 -19.14033 -18.71752 -17.82012 -17.61114 -16.97992 -16.90224 -16.31892 -16.12655 -15.96605 -15.78096 -15.72655 -15.25722 -15.06757 -14.86722 -14.74237 -14.59981 -14.39845 -14.05826 -13.67414 -13.35831 -13.33349 -13.04220 -12.89686 -12.73219 -12.55192 -12.41190 -12.40459 -12.21174 -12.18871 -12.01314 -11.83719 -11.50336 -11.20837 -11.04044 -10.98117 -10.80760 -10.55001 -9.95526 -9.48924 -8.74782 -7.93737 -5.38600 0.21723 1.42547 1.45679 1.54156 1.64783 1.82263 2.06751 2.18364 2.44634 2.70927 3.18930 3.28408 3.42796 3.46119 3.58285 3.74475 3.92724 4.02089 4.07056 4.16862 4.18590 4.27688 4.30966 4.45960 4.48981 4.52223 4.57680 4.62901 4.68227 4.71451 4.74240 4.83647 4.94488 4.98024 5.03553 5.08121 5.11859 5.19792 5.22416 5.28824 5.48675 5.49732 5.58916 6.24533 6.27840 6.32383 6.35443 6.86372 6.94777 7.05438 7.72405 8.26018 9.12416 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.003465 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.234560 B = 8078.932993 C = 8473.559285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 C 0.088 3.912 4 N -0.529 5.529 5 C 0.241 3.759 6 N -0.546 5.546 7 H 0.437 0.563 8 C -0.103 4.103 9 C 0.600 3.400 10 O -0.564 6.564 11 N -0.613 5.613 12 C 0.093 3.907 13 C -0.107 4.107 14 C 0.090 3.910 15 C 0.107 3.893 16 C 0.174 3.826 17 N -0.614 5.614 18 C -0.264 4.264 19 H 0.065 0.935 20 C -0.040 4.040 21 N -0.929 5.929 22 Si 0.959 3.041 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.277 1.277 26 C 0.107 3.893 27 C 0.052 3.948 28 O -0.371 6.371 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.268 0.732 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.013 0.987 42 H 0.070 0.930 43 H 0.253 0.747 44 H 0.026 0.974 45 H 0.067 0.933 46 H 0.119 0.881 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 6.167 19.185 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.046 4.046 4 N -0.249 5.249 5 C -0.043 4.043 6 N -0.156 5.156 7 H 0.283 0.717 8 C -0.219 4.219 9 C 0.390 3.610 10 O -0.443 6.443 11 N -0.345 5.345 12 C -0.029 4.029 13 C -0.145 4.145 14 C 0.048 3.952 15 C -0.016 4.016 16 C 0.047 3.953 17 N -0.339 5.339 18 C -0.394 4.394 19 H 0.083 0.917 20 C -0.236 4.236 21 N -0.575 5.575 22 Si 0.787 3.213 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.202 1.202 26 C -0.019 4.019 27 C -0.025 4.025 28 O -0.290 6.290 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.283 0.717 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.031 0.969 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.137 0.863 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.418 5.453 19.888 20.763 hybrid contribution 0.745 -0.465 -2.374 2.531 sum -1.673 4.988 17.515 18.288 Atomic orbital electron populations 1.21535 0.93826 1.02427 1.00892 1.20033 0.96752 0.89018 1.03101 1.21173 0.98900 0.97364 0.87204 1.70134 1.20259 1.04238 1.30298 1.26190 0.98083 0.97748 0.82294 1.43824 1.49910 1.12543 1.09331 0.71729 1.20502 1.18070 0.90024 0.93312 1.16856 0.77284 0.83766 0.83083 1.90796 1.48924 1.21236 1.83385 1.48500 1.65388 1.14750 1.05899 1.22461 1.00173 0.81095 0.99147 1.22583 0.99835 1.00660 0.91458 1.22563 0.84092 0.92178 0.96335 1.22470 1.01248 0.98633 0.79278 1.20959 0.93523 0.94920 0.85852 1.44367 1.02505 1.40801 1.46201 1.19431 0.97335 1.01075 1.21534 0.91742 1.25631 0.98901 0.99353 0.99724 1.70112 1.09758 1.27180 1.50447 0.85406 0.77315 0.80171 0.78375 1.20983 1.21497 1.20216 1.21730 0.86297 0.98297 0.95547 1.23094 0.93152 0.94762 0.91508 1.87617 1.16570 1.52684 1.72127 0.90844 0.92230 0.94731 0.90898 0.89542 0.71673 0.89113 0.88431 0.86711 0.88032 0.92276 0.92334 0.96855 0.91146 0.93813 0.95637 0.91442 0.86284 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.89 71.98 0.71 -2.42 16 2 C -0.05 -1.34 5.93 29.85 0.18 -1.16 16 3 C 0.09 2.39 6.40 41.96 0.27 2.65 16 4 N -0.53 -12.14 11.20 -187.59 -2.10 -14.24 16 5 C 0.24 3.38 13.01 180.33 2.35 5.72 16 6 N -0.55 -8.80 5.67 -188.03 -1.07 -9.86 16 7 H 0.44 4.37 5.13 -92.71 -0.48 3.89 16 8 C -0.10 -2.72 6.89 40.01 0.28 -2.45 16 9 C 0.60 19.88 7.82 86.47 0.68 20.55 16 10 O -0.56 -22.84 15.08 -4.28 -0.06 -22.91 16 11 N -0.61 -18.67 3.33 -816.66 -2.72 -21.39 16 12 C 0.09 1.89 5.13 86.76 0.45 2.33 16 13 C -0.11 -2.63 6.11 31.55 0.19 -2.44 16 14 C 0.09 3.19 0.83 -10.08 -0.01 3.18 16 15 C 0.11 4.00 5.86 86.64 0.51 4.51 16 16 C 0.17 7.81 4.06 86.01 0.35 8.16 16 17 N -0.61 -30.02 2.99 -698.85 -2.09 -32.11 16 18 C -0.26 -14.25 9.66 84.04 0.81 -13.44 16 19 H 0.06 3.45 7.88 -2.91 -0.02 3.43 16 20 C -0.04 -2.17 4.98 84.86 0.42 -1.75 16 21 N -0.93 -52.28 11.11 21.65 0.24 -52.04 16 22 Si 0.96 44.30 29.58 68.60 2.03 46.33 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 C 0.11 4.34 6.71 86.34 0.58 4.92 16 27 C 0.05 1.81 6.79 72.07 0.49 2.30 16 28 O -0.37 -13.05 10.29 -148.95 -1.53 -14.58 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 2.23 6.48 -2.39 -0.02 2.21 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.27 0.54 8.06 -2.91 -0.02 0.51 16 35 H 0.09 1.43 7.10 -2.39 -0.02 1.41 16 36 H 0.10 1.37 7.27 -2.39 -0.02 1.35 16 37 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.10 2.40 8.00 -2.39 -0.02 2.38 16 39 H 0.06 2.45 7.82 -2.38 -0.02 2.43 16 40 H 0.06 2.51 6.03 -2.39 -0.01 2.50 16 41 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.07 3.55 5.95 -2.39 -0.01 3.53 16 43 H 0.25 13.77 8.31 -92.70 -0.77 13.00 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16 46 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 47 H 0.04 1.37 6.27 -2.39 -0.01 1.36 16 Total: -1.00 -74.60 368.06 1.47 -73.14 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.52 Total: 16.98 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 8.25 Total: 30.68 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -7.74 Total: -129.65 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.60 Total: -37.49 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -74.60 1.47 -73.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972655113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.677 kcal (2) G-P(sol) polarization free energy of solvation -74.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds