Wall clock time and date at job start Tue Mar 31 2020 17:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50707 * 109.47004 * 2 1 4 4 C 1.36351 * 126.49271 * 90.00252 * 3 2 1 5 5 C 1.46812 * 125.85090 * 359.97438 * 4 3 2 6 6 O 1.21678 * 119.99762 * 353.48352 * 5 4 3 7 7 N 1.34773 * 119.99903 * 173.47263 * 5 4 3 8 8 C 1.47420 * 125.65156 * 354.48148 * 7 5 4 9 9 C 1.54908 * 104.83475 * 204.08809 * 8 7 5 10 10 C 1.55400 * 101.66720 * 323.07713 * 9 8 7 11 11 H 1.09005 * 110.69418 * 277.04695 * 10 9 8 12 12 N 1.46500 * 110.85391 * 153.69540 * 10 9 8 13 13 C 1.36945 * 119.99608 * 91.53769 * 12 10 9 14 14 H 1.07993 * 120.00258 * 0.02562 * 13 12 10 15 15 C 1.38812 * 119.99764 * 179.97438 * 13 12 10 16 16 N 1.31623 * 119.99959 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00024 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47408 * 60.00289 * 17 15 13 19 19 H 1.48507 * 109.47418 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46964 * 300.00200 * 17 15 13 21 21 C 1.47027 * 125.64760 * 174.43660 * 7 5 4 22 22 N 1.37780 * 108.29900 * 180.24273 * 4 3 2 23 23 H 0.97004 * 125.38626 * 179.70597 * 22 4 3 24 24 C 1.34255 * 109.21576 * 359.55295 * 22 4 3 25 25 C 1.50709 * 125.80090 * 180.16565 * 24 22 4 26 26 C 1.38206 * 108.39876 * 0.44463 * 24 22 4 27 27 C 1.47399 * 126.46709 * 179.72752 * 26 24 22 28 28 N 1.34777 * 119.99982 * 89.99297 * 27 26 24 29 29 O 1.21613 * 119.99527 * 270.00095 * 27 26 24 30 30 H 1.09004 * 109.47668 * 59.99913 * 1 2 3 31 31 H 1.09001 * 109.47544 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47110 * 299.99751 * 1 2 3 33 33 H 1.09004 * 109.47110 * 240.00249 * 2 1 3 34 34 H 1.09004 * 109.47668 * 120.00087 * 2 1 3 35 35 H 1.09001 * 110.36820 * 322.92595 * 8 7 5 36 36 H 1.09006 * 110.36797 * 85.13909 * 8 7 5 37 37 H 1.09006 * 111.00074 * 81.06347 * 9 8 7 38 38 H 1.09000 * 111.00377 * 204.91316 * 9 8 7 39 39 H 0.96996 * 120.00594 * 271.53714 * 12 10 9 40 40 H 0.97002 * 120.00059 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.88230 * 298.39920 * 21 7 5 42 42 H 1.08997 * 109.88115 * 59.40638 * 21 7 5 43 43 H 1.08999 * 109.47114 * 270.32410 * 25 24 22 44 44 H 1.08996 * 109.46975 * 30.32802 * 25 24 22 45 45 H 1.09003 * 109.46939 * 150.32223 * 25 24 22 46 46 H 0.97002 * 119.99718 * 0.02562 * 28 27 26 47 47 H 0.96995 * 119.99612 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3026 2.1854 1.0962 5 6 2.1537 1.7657 2.4951 6 8 1.6465 0.6912 2.7572 7 7 2.5791 2.5705 3.4890 8 6 3.3108 3.8383 3.3144 9 6 4.0821 4.0373 4.6430 10 6 3.0623 3.4951 5.6826 11 1 2.3309 4.2612 5.9404 12 7 3.7489 3.0075 6.8814 13 6 3.9620 3.8509 7.9390 14 1 3.6236 4.8753 7.8896 15 6 4.6122 3.3888 9.0751 16 7 5.0242 2.1402 9.1356 17 14 4.9023 4.5390 10.5181 18 1 3.5978 5.0331 11.0274 19 1 5.6113 3.8080 11.5990 20 1 5.7290 5.6903 10.0749 21 6 2.3893 2.3300 4.9270 22 7 2.7336 3.4213 0.6660 23 1 2.9888 4.1590 1.2419 24 6 2.7476 3.4418 -0.6763 25 6 3.1606 4.6088 -1.5360 26 6 2.3128 2.2131 -1.1359 27 6 2.1690 1.8057 -2.5452 28 7 3.2036 1.2301 -3.1892 29 8 1.1168 1.9890 -3.1267 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.0072 3.7625 2.4792 36 1 2.6131 4.6599 3.1521 37 1 4.9992 3.4481 4.6543 38 1 4.2951 5.0921 4.8169 39 1 4.0525 2.0874 6.9260 40 1 5.4781 1.8172 9.9296 41 1 1.3251 2.3020 5.1609 42 1 2.8557 1.3863 5.2096 43 1 2.2914 5.2329 -1.7434 44 1 3.9139 5.1972 -1.0121 45 1 3.5754 4.2400 -2.4741 46 1 4.0428 1.0837 -2.7252 47 1 3.1090 0.9624 -4.1167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018963086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:03 Heat of formation + Delta-G solvation = -17.918676 kcal Electronic energy + Delta-G solvation = -29060.573682 eV Core-core repulsion = 25051.061598 eV Total energy + Delta-G solvation = -4009.512084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02442 -39.64840 -38.88210 -37.41577 -34.59421 -34.03021 -33.78068 -32.14126 -31.32086 -30.26436 -29.68421 -28.24203 -26.92789 -24.47958 -23.65233 -23.21412 -22.79731 -20.68918 -20.13283 -19.85102 -19.14130 -17.88955 -17.49511 -17.24438 -16.51886 -16.08256 -15.97809 -15.44303 -15.09292 -14.61779 -14.38334 -14.21818 -14.00931 -13.85509 -13.65005 -13.61122 -13.37416 -13.10213 -12.98087 -12.72846 -12.63172 -12.42298 -12.09894 -11.99431 -11.78278 -11.31516 -11.23967 -10.91780 -10.87845 -10.81572 -10.48614 -10.37056 -10.20443 -9.91899 -9.89276 -9.79457 -9.08623 -9.03779 -8.65723 -8.25061 -7.14517 -5.89747 -3.21390 1.30010 2.07426 2.38929 2.71677 2.97715 3.30826 3.35821 3.40778 3.42046 3.51260 4.36249 4.43476 4.47620 4.66871 4.72326 4.79599 4.99425 5.05418 5.08648 5.09364 5.14891 5.29966 5.42528 5.43694 5.46946 5.53699 5.63397 5.71602 5.75864 5.79397 5.98602 6.03689 6.11573 6.20388 6.25901 6.32985 6.34928 6.44131 6.48679 6.53395 6.65286 6.75005 7.03552 7.11145 7.53953 7.56800 8.07590 8.17403 8.27205 9.38752 9.91721 10.26290 11.32076 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.002431 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.913476 B =11513.260605 C =12255.605464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 C -0.032 4.032 4 C -0.044 4.044 5 C 0.599 3.401 6 O -0.523 6.523 7 N -0.613 5.613 8 C 0.085 3.915 9 C -0.153 4.153 10 C 0.173 3.827 11 H 0.068 0.932 12 N -0.713 5.713 13 C -0.250 4.250 14 H 0.072 0.928 15 C -0.008 4.008 16 N -0.929 5.929 17 Si 0.910 3.090 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.101 3.899 22 N -0.527 5.527 23 H 0.422 0.578 24 C 0.093 3.907 25 C -0.094 4.094 26 C -0.233 4.233 27 C 0.604 3.396 28 N -0.850 5.850 29 O -0.539 6.539 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.403 0.597 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 2.934 -24.120 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.099 4.099 3 C -0.040 4.040 4 C -0.155 4.155 5 C 0.388 3.612 6 O -0.399 6.399 7 N -0.348 5.348 8 C -0.039 4.039 9 C -0.194 4.194 10 C 0.061 3.939 11 H 0.086 0.914 12 N -0.353 5.353 13 C -0.381 4.381 14 H 0.090 0.910 15 C -0.205 4.205 16 N -0.575 5.575 17 Si 0.740 3.260 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.022 4.022 22 N -0.127 5.127 23 H 0.266 0.734 24 C -0.029 4.029 25 C -0.152 4.152 26 C -0.243 4.243 27 C 0.388 3.612 28 N -0.413 5.413 29 O -0.414 6.414 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.222 0.778 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.232 0.768 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.338 2.712 -23.882 24.149 hybrid contribution 0.964 0.628 0.932 1.480 sum -1.374 3.340 -22.951 23.233 Atomic orbital electron populations 1.21617 0.94420 1.01497 1.02072 1.20124 0.96500 0.90435 1.02859 1.19505 0.99190 0.96202 0.89072 1.19802 1.15035 0.86907 0.93741 1.16658 0.78713 0.83685 0.82155 1.90827 1.45066 1.21133 1.82885 1.48363 1.56441 1.22743 1.07206 1.22577 0.94854 0.86067 1.00391 1.23632 1.00225 1.02571 0.92998 1.21204 0.92533 0.93130 0.87018 0.91380 1.42352 1.67501 1.12693 1.12773 1.19163 1.31972 0.93460 0.93483 0.90977 1.24790 1.00902 0.96377 0.98416 1.69655 1.44039 1.14408 1.29445 0.86238 0.77866 0.79689 0.82159 1.21103 1.21601 1.21163 1.22391 1.01038 1.00912 0.77859 1.42291 1.50697 1.13306 1.06401 0.73427 1.20595 1.02458 0.96508 0.83356 1.20501 1.02232 0.94048 0.98402 1.19084 1.16777 0.95584 0.92808 1.17430 0.82986 0.75710 0.85050 1.43892 1.16244 1.64647 1.16536 1.90828 1.27741 1.54714 1.68159 0.92840 0.92612 0.92273 0.91886 0.89183 0.91679 0.91544 0.90351 0.90256 0.77831 0.93192 0.91363 0.90736 0.89820 0.90672 0.89777 0.76834 0.76883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.89 37.15 0.37 -1.41 16 2 C -0.06 -0.78 5.62 -27.88 -0.16 -0.94 16 3 C -0.03 -0.41 5.46 -104.14 -0.57 -0.98 16 4 C -0.04 -0.57 6.76 -82.41 -0.56 -1.13 16 5 C 0.60 9.40 7.81 -12.80 -0.10 9.30 16 6 O -0.52 -9.67 15.12 5.21 0.08 -9.59 16 7 N -0.61 -9.04 3.33 -172.01 -0.57 -9.61 16 8 C 0.08 0.98 5.24 -2.53 -0.01 0.96 16 9 C -0.15 -2.24 6.78 -24.45 -0.17 -2.40 16 10 C 0.17 3.11 3.63 -65.96 -0.24 2.87 16 11 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 12 N -0.71 -16.68 5.23 -51.52 -0.27 -16.95 16 13 C -0.25 -6.50 9.96 -15.06 -0.15 -6.65 16 14 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 15 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 16 N -0.93 -27.05 13.06 55.49 0.72 -26.33 16 17 Si 0.91 21.42 29.55 -169.99 -5.02 16.39 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 21 C 0.10 1.71 6.62 -3.06 -0.02 1.69 16 22 N -0.53 -5.21 5.28 -5.61 -0.03 -5.24 16 23 H 0.42 3.30 5.27 -40.82 -0.22 3.09 16 24 C 0.09 0.87 7.20 -81.54 -0.59 0.28 16 25 C -0.09 -0.56 10.24 36.01 0.37 -0.19 16 26 C -0.23 -2.64 5.89 -105.02 -0.62 -3.25 16 27 C 0.60 6.66 7.26 -12.53 -0.09 6.57 16 28 N -0.85 -5.56 8.87 30.43 0.27 -5.29 16 29 O -0.54 -8.06 17.94 5.27 0.09 -7.96 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 34 H 0.09 1.27 6.57 -51.93 -0.34 0.93 16 35 H 0.07 0.62 6.21 -51.93 -0.32 0.30 16 36 H 0.07 0.62 7.82 -51.93 -0.41 0.22 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.39 9.82 7.56 -40.82 -0.31 9.51 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.40 7.71 -51.93 -0.40 1.00 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.44 7.93 -51.93 -0.41 0.03 16 46 H 0.40 1.79 8.81 -40.82 -0.36 1.43 16 47 H 0.40 2.00 8.93 -40.82 -0.36 1.63 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -34.18 387.79 -8.41 -42.58 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -6.90 Total: 11.74 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -2.63 Total: 4.40 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.12 Total: -63.42 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.17 Total: -17.55 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.18 -8.41 -42.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018963086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.666 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds