Wall clock time and date at job start Tue Mar 31 2020 17:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50707 * 109.47004 * 2 1 4 4 C 1.36351 * 126.49271 * 90.00252 * 3 2 1 5 5 C 1.46812 * 125.85090 * 359.97438 * 4 3 2 6 6 O 1.21678 * 119.99762 * 353.48352 * 5 4 3 7 7 N 1.34773 * 119.99903 * 173.47263 * 5 4 3 8 8 C 1.47420 * 125.65156 * 354.48148 * 7 5 4 9 9 C 1.54908 * 104.83475 * 204.08809 * 8 7 5 10 10 C 1.55400 * 101.66720 * 323.07713 * 9 8 7 11 11 H 1.09005 * 110.69418 * 277.04695 * 10 9 8 12 12 N 1.46500 * 110.85391 * 153.69540 * 10 9 8 13 13 C 1.36945 * 119.99608 * 91.53769 * 12 10 9 14 14 H 1.07993 * 120.00258 * 0.02562 * 13 12 10 15 15 C 1.38812 * 119.99764 * 179.97438 * 13 12 10 16 16 N 1.31623 * 119.99959 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00024 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47408 * 60.00289 * 17 15 13 19 19 H 1.48507 * 109.47418 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46964 * 300.00200 * 17 15 13 21 21 C 1.47027 * 125.64760 * 174.43660 * 7 5 4 22 22 N 1.37780 * 108.29900 * 180.24273 * 4 3 2 23 23 H 0.97004 * 125.38626 * 179.70597 * 22 4 3 24 24 C 1.34255 * 109.21576 * 359.55295 * 22 4 3 25 25 C 1.50709 * 125.80090 * 180.16565 * 24 22 4 26 26 C 1.38206 * 108.39876 * 0.44463 * 24 22 4 27 27 C 1.47399 * 126.46709 * 179.72752 * 26 24 22 28 28 N 1.34777 * 119.99982 * 89.99297 * 27 26 24 29 29 O 1.21613 * 119.99527 * 270.00095 * 27 26 24 30 30 H 1.09004 * 109.47668 * 59.99913 * 1 2 3 31 31 H 1.09001 * 109.47544 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47110 * 299.99751 * 1 2 3 33 33 H 1.09004 * 109.47110 * 240.00249 * 2 1 3 34 34 H 1.09004 * 109.47668 * 120.00087 * 2 1 3 35 35 H 1.09001 * 110.36820 * 322.92595 * 8 7 5 36 36 H 1.09006 * 110.36797 * 85.13909 * 8 7 5 37 37 H 1.09006 * 111.00074 * 81.06347 * 9 8 7 38 38 H 1.09000 * 111.00377 * 204.91316 * 9 8 7 39 39 H 0.96996 * 120.00594 * 271.53714 * 12 10 9 40 40 H 0.97002 * 120.00059 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.88230 * 298.39920 * 21 7 5 42 42 H 1.08997 * 109.88115 * 59.40638 * 21 7 5 43 43 H 1.08999 * 109.47114 * 270.32410 * 25 24 22 44 44 H 1.08996 * 109.46975 * 30.32802 * 25 24 22 45 45 H 1.09003 * 109.46939 * 150.32223 * 25 24 22 46 46 H 0.97002 * 119.99718 * 0.02562 * 28 27 26 47 47 H 0.96995 * 119.99612 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3026 2.1854 1.0962 5 6 2.1537 1.7657 2.4951 6 8 1.6465 0.6912 2.7572 7 7 2.5791 2.5705 3.4890 8 6 3.3108 3.8383 3.3144 9 6 4.0821 4.0373 4.6430 10 6 3.0623 3.4951 5.6826 11 1 2.3309 4.2612 5.9404 12 7 3.7489 3.0075 6.8814 13 6 3.9620 3.8509 7.9390 14 1 3.6236 4.8753 7.8896 15 6 4.6122 3.3888 9.0751 16 7 5.0242 2.1402 9.1356 17 14 4.9023 4.5390 10.5181 18 1 3.5978 5.0331 11.0274 19 1 5.6113 3.8080 11.5990 20 1 5.7290 5.6903 10.0749 21 6 2.3893 2.3300 4.9270 22 7 2.7336 3.4213 0.6660 23 1 2.9888 4.1590 1.2419 24 6 2.7476 3.4418 -0.6763 25 6 3.1606 4.6088 -1.5360 26 6 2.3128 2.2131 -1.1359 27 6 2.1690 1.8057 -2.5452 28 7 3.2036 1.2301 -3.1892 29 8 1.1168 1.9890 -3.1267 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.0072 3.7625 2.4792 36 1 2.6131 4.6599 3.1521 37 1 4.9992 3.4481 4.6543 38 1 4.2951 5.0921 4.8169 39 1 4.0525 2.0874 6.9260 40 1 5.4781 1.8172 9.9296 41 1 1.3251 2.3020 5.1609 42 1 2.8557 1.3863 5.2096 43 1 2.2914 5.2329 -1.7434 44 1 3.9139 5.1972 -1.0121 45 1 3.5754 4.2400 -2.4741 46 1 4.0428 1.0837 -2.7252 47 1 3.1090 0.9624 -4.1167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018963086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:02 Heat of formation + Delta-G solvation = -44.002546 kcal Electronic energy + Delta-G solvation = -29061.704764 eV Core-core repulsion = 25051.061598 eV Total energy + Delta-G solvation = -4010.643166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.92200 -40.79232 -39.80147 -38.72725 -36.09261 -35.22012 -34.54008 -33.49923 -32.44818 -31.27676 -30.95367 -29.58856 -27.89185 -25.89824 -25.04183 -24.21070 -23.93450 -21.80944 -21.39876 -20.74837 -20.06641 -19.36847 -18.86926 -17.97957 -17.54642 -17.19855 -17.05713 -16.63098 -16.44925 -15.91848 -15.39558 -15.26857 -15.17576 -15.09686 -14.87314 -14.74435 -14.48811 -14.27634 -13.91460 -13.71026 -13.58867 -13.40119 -13.27867 -13.07368 -12.99934 -12.92076 -12.66625 -12.41842 -12.21511 -12.17762 -11.95300 -11.78867 -11.74005 -11.30879 -11.04534 -10.94687 -10.62237 -9.99830 -9.82064 -9.16877 -9.06333 -7.95487 -5.26299 0.33236 1.21947 1.49225 1.52066 1.53487 1.58098 1.76430 1.95941 2.19143 2.56642 2.79519 3.33245 3.44820 3.60709 3.69532 3.82479 3.86547 3.96499 4.04554 4.19089 4.22616 4.28713 4.34009 4.44098 4.46298 4.48707 4.62316 4.70316 4.75394 4.76340 4.79193 4.89637 5.00865 5.07338 5.12394 5.17703 5.29204 5.29830 5.38241 5.51467 5.52679 5.70022 5.93800 6.24436 6.29074 6.39174 6.48079 6.97735 7.31191 7.38580 8.02532 8.25794 9.27711 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.002431 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.913476 B =11513.260605 C =12255.605464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.039 4.039 4 C -0.066 4.066 5 C 0.595 3.405 6 O -0.563 6.563 7 N -0.614 5.614 8 C 0.090 3.910 9 C -0.141 4.141 10 C 0.167 3.833 11 H 0.077 0.923 12 N -0.730 5.730 13 C -0.241 4.241 14 H 0.086 0.914 15 C -0.076 4.076 16 N -0.971 5.971 17 Si 0.974 3.026 18 H -0.278 1.278 19 H -0.301 1.301 20 H -0.273 1.273 21 C 0.110 3.890 22 N -0.514 5.514 23 H 0.433 0.567 24 C 0.120 3.880 25 C -0.096 4.096 26 C -0.253 4.253 27 C 0.606 3.394 28 N -0.826 5.826 29 O -0.584 6.584 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.416 0.584 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 5.804 -26.439 27.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.099 4.099 3 C -0.047 4.047 4 C -0.177 4.177 5 C 0.386 3.614 6 O -0.443 6.443 7 N -0.347 5.347 8 C -0.032 4.032 9 C -0.182 4.182 10 C 0.057 3.943 11 H 0.095 0.905 12 N -0.369 5.369 13 C -0.372 4.372 14 H 0.104 0.896 15 C -0.268 4.268 16 N -0.621 5.621 17 Si 0.803 3.197 18 H -0.204 1.204 19 H -0.228 1.228 20 H -0.199 1.199 21 C -0.014 4.014 22 N -0.115 5.115 23 H 0.279 0.721 24 C -0.004 4.004 25 C -0.153 4.153 26 C -0.263 4.263 27 C 0.390 3.610 28 N -0.389 5.389 29 O -0.464 6.464 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.122 0.878 45 H 0.112 0.888 46 H 0.247 0.753 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.566 5.640 -26.251 26.896 hybrid contribution 0.713 -0.264 1.507 1.688 sum -0.854 5.376 -24.744 25.336 Atomic orbital electron populations 1.21539 0.94684 1.01932 1.00744 1.20088 0.96251 0.90968 1.02601 1.19640 0.98910 0.96269 0.89917 1.19346 1.17581 0.88606 0.92133 1.17031 0.78026 0.83164 0.83181 1.90801 1.46905 1.22904 1.83649 1.48367 1.56641 1.23849 1.05877 1.22762 0.95484 0.85464 0.99501 1.23401 0.98530 1.03000 0.93269 1.21416 0.93308 0.93441 0.86130 0.90536 1.42536 1.68221 1.11893 1.14229 1.19611 1.29808 0.94073 0.93715 0.89648 1.25606 1.02054 0.97785 1.01333 1.69828 1.46072 1.16413 1.29824 0.85200 0.77798 0.77894 0.78769 1.20407 1.22777 1.19929 1.22071 1.00334 0.99341 0.79617 1.42178 1.50111 1.12452 1.06802 0.72076 1.21174 0.99379 0.96647 0.83156 1.20710 1.03354 0.92879 0.98379 1.19189 1.18074 0.96395 0.92608 1.17411 0.83006 0.75658 0.84894 1.43685 1.15717 1.62582 1.16929 1.90812 1.29602 1.56954 1.69028 0.93256 0.91386 0.94238 0.90364 0.91064 0.88902 0.88028 0.92339 0.88339 0.79604 0.94063 0.91766 0.93554 0.89072 0.87825 0.88786 0.75284 0.75660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.89 71.98 0.71 -2.74 16 2 C -0.06 -1.57 5.62 29.85 0.17 -1.41 16 3 C -0.04 -0.97 5.46 -19.55 -0.11 -1.08 16 4 C -0.07 -1.65 6.76 40.01 0.27 -1.38 16 5 C 0.59 18.68 7.81 86.49 0.68 19.35 16 6 O -0.56 -21.75 15.12 -4.28 -0.06 -21.81 16 7 N -0.61 -17.61 3.33 -816.35 -2.72 -20.32 16 8 C 0.09 1.79 5.24 86.86 0.45 2.25 16 9 C -0.14 -3.83 6.78 32.07 0.22 -3.62 16 10 C 0.17 5.88 3.63 46.26 0.17 6.05 16 11 H 0.08 2.58 8.09 -2.38 -0.02 2.56 16 12 N -0.73 -34.61 5.23 -316.92 -1.66 -36.27 16 13 C -0.24 -12.47 9.96 84.03 0.84 -11.63 16 14 H 0.09 4.11 7.83 -2.91 -0.02 4.09 16 15 C -0.08 -4.16 5.50 84.86 0.47 -3.69 16 16 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 17 Si 0.97 44.23 29.55 68.60 2.03 46.26 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C 0.11 3.81 6.62 86.73 0.57 4.38 16 22 N -0.51 -8.52 5.28 -171.67 -0.91 -9.42 16 23 H 0.43 4.86 5.27 -92.71 -0.49 4.37 16 24 C 0.12 1.84 7.20 42.18 0.30 2.15 16 25 C -0.10 -0.69 10.24 71.24 0.73 0.03 16 26 C -0.25 -5.22 5.89 -20.12 -0.12 -5.34 16 27 C 0.61 12.24 7.26 86.66 0.63 12.87 16 28 N -0.83 -8.77 8.87 -175.90 -1.56 -10.33 16 29 O -0.58 -16.85 17.94 -4.07 -0.07 -16.92 16 30 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.08 1.70 8.05 -2.38 -0.02 1.68 16 34 H 0.07 2.10 6.57 -2.38 -0.02 2.09 16 35 H 0.09 1.39 6.21 -2.39 -0.01 1.37 16 36 H 0.10 1.41 7.82 -2.38 -0.02 1.39 16 37 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.10 2.33 8.14 -2.39 -0.02 2.32 16 39 H 0.37 19.67 7.56 -92.71 -0.70 18.97 16 40 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.05 1.85 7.71 -2.39 -0.02 1.84 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.10 0.22 8.14 -2.39 -0.02 0.21 16 45 H 0.09 0.57 7.93 -2.39 -0.02 0.55 16 46 H 0.42 2.49 8.81 -92.71 -0.82 1.68 16 47 H 0.41 3.09 8.93 -92.71 -0.83 2.26 16 Total: -1.00 -78.06 387.79 -0.47 -78.53 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -1.79 Total: 32.10 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 5.98 Total: 16.19 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -6.56 Total: -134.35 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.14 Total: -38.74 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -78.06 -0.47 -78.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018963086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.531 kcal (2) G-P(sol) polarization free energy of solvation -78.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds