Wall clock time and date at job start Tue Mar 31 2020 18:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.36349 * 126.49436 * 90.02462 * 3 2 1 5 5 C 1.46808 * 125.85009 * 0.02562 * 4 3 2 6 6 O 1.21676 * 119.99928 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99987 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99840 * 179.97438 * 7 5 4 9 9 H 1.08997 * 112.84905 * 334.66269 * 8 7 5 10 10 C 1.53777 * 113.61356 * 105.86093 * 8 7 5 11 11 C 1.54049 * 86.99000 * 89.15809 * 10 8 7 12 12 H 1.08997 * 113.61968 * 139.97170 * 11 10 8 13 13 N 1.46498 * 113.69348 * 270.87862 * 11 10 8 14 14 C 1.36936 * 119.99618 * 252.52891 * 13 11 10 15 15 H 1.07997 * 120.00336 * 359.97438 * 14 13 11 16 16 C 1.38816 * 120.00180 * 179.97438 * 14 13 11 17 17 N 1.31610 * 120.00510 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99608 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46868 * 90.00141 * 18 16 14 20 20 H 1.48503 * 109.46909 * 209.99882 * 18 16 14 21 21 H 1.48502 * 109.47004 * 330.00196 * 18 16 14 22 22 C 1.53781 * 113.61325 * 203.46518 * 8 7 5 23 23 N 1.37781 * 108.29994 * 179.97438 * 4 3 2 24 24 H 0.96999 * 125.38853 * 180.02562 * 23 4 3 25 25 C 1.34259 * 109.21867 * 0.02562 * 23 4 3 26 26 C 1.50701 * 125.80373 * 180.02562 * 25 23 4 27 27 C 1.38216 * 108.39405 * 359.72714 * 25 23 4 28 28 C 1.47390 * 126.46162 * 180.27150 * 27 25 23 29 29 N 1.34776 * 120.00362 * 90.18594 * 28 27 25 30 30 O 1.21618 * 119.99834 * 270.18860 * 28 27 25 31 31 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 33 33 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 35 35 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 36 36 H 0.96998 * 119.99992 * 359.97438 * 7 5 4 37 37 H 1.08994 * 113.61686 * 203.66336 * 10 8 7 38 38 H 1.09004 * 113.61477 * 334.56556 * 10 8 7 39 39 H 0.97002 * 120.00555 * 72.51539 * 13 11 10 40 40 H 0.96999 * 120.00310 * 180.02562 * 17 16 14 41 41 H 1.09003 * 113.60873 * 25.43426 * 22 8 7 42 42 H 1.09001 * 113.61418 * 156.33250 * 22 8 7 43 43 H 1.09008 * 109.46938 * 89.97481 * 26 25 23 44 44 H 1.08994 * 109.47154 * 209.97391 * 26 25 23 45 45 H 1.08998 * 109.47220 * 329.97478 * 26 25 23 46 46 H 0.96996 * 119.99893 * 0.02562 * 29 28 27 47 47 H 0.97002 * 119.99795 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3030 2.1853 1.0961 5 6 2.1557 1.7651 2.4951 6 8 1.7596 0.6444 2.7552 7 7 2.4581 2.6211 3.4912 8 6 2.3105 2.2019 4.8872 9 1 1.5746 1.4082 5.0153 10 6 3.6487 1.9205 5.5907 11 6 3.6624 3.4100 5.9836 12 1 4.0186 3.5909 6.9977 13 7 4.3065 4.2746 4.9917 14 6 5.5369 4.8164 5.2518 15 1 6.0323 4.6067 6.1882 16 6 6.1475 5.6352 4.3117 17 7 7.3299 6.1564 4.5618 18 14 5.2909 5.9974 2.6916 19 1 4.4492 7.2121 2.8375 20 1 6.3082 6.2242 1.6338 21 1 4.4345 4.8439 2.3159 22 6 2.1295 3.3738 5.8664 23 7 2.7397 3.4192 0.6659 24 1 3.0005 4.1549 1.2418 25 6 2.7469 3.4421 -0.6765 26 6 3.1601 4.6089 -1.5361 27 6 2.3175 2.2113 -1.1360 28 6 2.1799 1.8018 -2.5451 29 7 3.2172 1.2251 -3.1837 30 8 1.1302 1.9844 -3.1317 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 2.7735 3.5146 3.2838 37 1 3.5612 1.2453 6.4417 38 1 4.4507 1.6403 4.9076 39 1 3.8615 4.4631 4.1506 40 1 7.7564 6.7289 3.9051 41 1 1.7056 4.2661 5.4057 42 1 1.6272 3.0952 6.7928 43 1 4.2285 4.5470 -1.7436 44 1 2.6057 4.5833 -2.4742 45 1 2.9451 5.5403 -1.0122 46 1 4.0542 1.0792 -2.7159 47 1 3.1264 0.9553 -4.1110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022195203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:02 Heat of formation + Delta-G solvation = -3.821146 kcal Electronic energy + Delta-G solvation = -29885.644877 eV Core-core repulsion = 25876.744107 eV Total energy + Delta-G solvation = -4008.900769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.86836 -39.89016 -38.93844 -37.92452 -34.49604 -33.79995 -33.67896 -32.92243 -31.54683 -30.66216 -30.06610 -27.23338 -25.34252 -24.95050 -23.94771 -23.32758 -22.41703 -21.02470 -19.79007 -19.71897 -19.02998 -18.33647 -17.68459 -17.27677 -16.43322 -15.95458 -15.74696 -15.33843 -15.00352 -14.76066 -14.41566 -14.21959 -14.08137 -14.03739 -13.97733 -13.66194 -13.38029 -12.98357 -12.88768 -12.85444 -12.42613 -12.33405 -12.18140 -12.04060 -12.01215 -11.23855 -11.21427 -11.13744 -10.86752 -10.57475 -10.41136 -10.29619 -9.98386 -9.82780 -9.79841 -9.76340 -9.15148 -8.97660 -8.89131 -8.20967 -7.54031 -6.00450 -3.37370 1.37749 2.16390 2.47393 2.68772 2.95014 3.07236 3.12418 3.16998 3.36108 3.61610 4.28016 4.49572 4.67456 4.77990 4.86747 4.90672 4.99385 5.11493 5.13385 5.22672 5.24423 5.25284 5.49939 5.54275 5.56973 5.59947 5.63403 5.75152 5.80715 5.92097 6.00142 6.04820 6.07146 6.30704 6.32613 6.36085 6.47015 6.50473 6.57598 6.61539 6.70195 6.84692 7.12805 7.20126 7.55518 7.75964 8.16007 8.18594 8.23311 8.92979 9.64612 9.82877 11.17983 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.004438 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.257508 B = 6307.877990 C = 8213.028871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 C -0.029 4.029 4 C -0.054 4.054 5 C 0.591 3.409 6 O -0.526 6.526 7 N -0.706 5.706 8 C 0.122 3.878 9 H 0.098 0.902 10 C -0.183 4.183 11 C 0.168 3.832 12 H 0.077 0.923 13 N -0.727 5.727 14 C -0.245 4.245 15 H 0.096 0.904 16 C 0.006 3.994 17 N -0.926 5.926 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.296 1.296 22 C -0.168 4.168 23 N -0.524 5.524 24 H 0.420 0.580 25 C 0.101 3.899 26 C -0.100 4.100 27 C -0.235 4.235 28 C 0.606 3.394 29 N -0.849 5.849 30 O -0.540 6.540 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.393 0.607 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.351 0.649 40 H 0.262 0.738 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.404 0.596 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 -7.768 -10.404 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.037 4.037 4 C -0.165 4.165 5 C 0.379 3.621 6 O -0.403 6.403 7 N -0.358 5.358 8 C 0.017 3.983 9 H 0.116 0.884 10 C -0.225 4.225 11 C 0.057 3.943 12 H 0.095 0.905 13 N -0.369 5.369 14 C -0.375 4.375 15 H 0.114 0.886 16 C -0.191 4.191 17 N -0.574 5.574 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.226 1.226 22 C -0.207 4.207 23 N -0.121 5.121 24 H 0.261 0.739 25 C -0.021 4.021 26 C -0.158 4.158 27 C -0.245 4.245 28 C 0.390 3.610 29 N -0.412 5.412 30 O -0.417 6.417 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.229 0.771 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.184 0.816 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.232 0.768 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.155 -8.148 -10.140 16.502 hybrid contribution 0.350 1.053 -1.195 1.631 sum -9.804 -7.095 -11.335 16.581 Atomic orbital electron populations 1.21615 0.94549 1.01371 1.02008 1.20148 0.96338 0.90463 1.03047 1.19476 0.99137 0.96060 0.89012 1.19856 1.15483 0.87180 0.94017 1.16974 0.77401 0.84956 0.82768 1.90776 1.47021 1.19236 1.83295 1.45798 1.67361 1.16611 1.06077 1.21875 0.99121 0.98004 0.79308 0.88401 1.24284 0.97040 1.00794 1.00414 1.21238 0.90026 0.89047 0.94002 0.90460 1.42552 1.20690 1.56868 1.16761 1.19152 0.92550 1.22441 1.03362 0.88590 1.24699 0.96607 0.99839 0.97910 1.69663 1.15227 1.36808 1.35657 0.86546 0.78612 0.76630 0.85563 1.20717 1.21200 1.22561 1.23888 0.99777 0.97802 0.99264 1.41965 1.50061 1.13479 1.06639 0.73893 1.20606 1.01848 0.96582 0.83093 1.20571 1.02718 0.93718 0.98767 1.19058 1.17193 0.95379 0.92889 1.17389 0.82926 0.75640 0.85013 1.43879 1.16301 1.64486 1.16532 1.90819 1.28015 1.54888 1.67937 0.92501 0.92775 0.92648 0.88924 0.91850 0.77071 0.89750 0.90894 0.81554 0.92788 0.91289 0.88416 0.89695 0.89324 0.90595 0.76760 0.76897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 37.16 0.37 -1.44 16 2 C -0.06 -0.84 5.69 -27.88 -0.16 -1.00 16 3 C -0.03 -0.42 5.46 -104.14 -0.57 -0.99 16 4 C -0.05 -0.83 6.99 -82.41 -0.58 -1.41 16 5 C 0.59 9.80 7.79 -12.80 -0.10 9.70 16 6 O -0.53 -9.50 14.31 5.21 0.07 -9.42 16 7 N -0.71 -11.20 5.12 -54.28 -0.28 -11.48 16 8 C 0.12 1.83 4.30 -67.12 -0.29 1.54 16 9 H 0.10 1.44 7.50 -51.93 -0.39 1.05 16 10 C -0.18 -2.94 7.70 -25.78 -0.20 -3.13 16 11 C 0.17 2.92 4.57 -66.98 -0.31 2.62 16 12 H 0.08 1.36 8.10 -51.93 -0.42 0.93 16 13 N -0.73 -15.35 4.99 -52.50 -0.26 -15.61 16 14 C -0.25 -6.36 10.45 -15.06 -0.16 -6.52 16 15 H 0.10 2.70 8.06 -52.49 -0.42 2.28 16 16 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 17 N -0.93 -27.22 13.97 55.49 0.78 -26.44 16 18 Si 0.89 19.38 27.73 -169.99 -4.71 14.67 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.30 -5.46 4.49 56.52 0.25 -5.21 16 22 C -0.17 -2.34 7.58 -25.92 -0.20 -2.54 16 23 N -0.52 -7.31 5.91 -5.61 -0.03 -7.35 16 24 H 0.42 5.71 6.32 -40.82 -0.26 5.45 16 25 C 0.10 1.30 7.20 -81.54 -0.59 0.72 16 26 C -0.10 -0.98 10.23 36.01 0.37 -0.62 16 27 C -0.24 -3.19 5.89 -105.02 -0.62 -3.81 16 28 C 0.61 7.74 7.27 -12.54 -0.09 7.65 16 29 N -0.85 -7.07 8.87 30.43 0.27 -6.80 16 30 O -0.54 -8.81 17.94 5.26 0.09 -8.72 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.35 6.41 -51.93 -0.33 1.02 16 35 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 36 H 0.39 6.27 5.03 -40.82 -0.21 6.06 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.35 7.00 3.22 -40.82 -0.13 6.87 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.09 0.82 7.94 -51.93 -0.41 0.41 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.40 2.62 8.81 -40.82 -0.36 2.26 16 47 H 0.40 2.61 8.93 -40.82 -0.36 2.24 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -32.86 383.99 -8.29 -41.15 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -6.80 Total: 23.39 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -3.21 Total: 0.83 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: 0.47 Total: -67.68 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: 0.17 Total: -18.14 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.86 -8.29 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022195203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.333 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds