Wall clock time and date at job start Tue Mar 31 2020 18:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.36349 * 126.49436 * 90.02462 * 3 2 1 5 5 C 1.46808 * 125.85009 * 0.02562 * 4 3 2 6 6 O 1.21676 * 119.99928 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99987 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99840 * 179.97438 * 7 5 4 9 9 H 1.08997 * 112.84905 * 334.66269 * 8 7 5 10 10 C 1.53777 * 113.61356 * 105.86093 * 8 7 5 11 11 C 1.54049 * 86.99000 * 89.15809 * 10 8 7 12 12 H 1.08997 * 113.61968 * 139.97170 * 11 10 8 13 13 N 1.46498 * 113.69348 * 270.87862 * 11 10 8 14 14 C 1.36936 * 119.99618 * 252.52891 * 13 11 10 15 15 H 1.07997 * 120.00336 * 359.97438 * 14 13 11 16 16 C 1.38816 * 120.00180 * 179.97438 * 14 13 11 17 17 N 1.31610 * 120.00510 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99608 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46868 * 90.00141 * 18 16 14 20 20 H 1.48503 * 109.46909 * 209.99882 * 18 16 14 21 21 H 1.48502 * 109.47004 * 330.00196 * 18 16 14 22 22 C 1.53781 * 113.61325 * 203.46518 * 8 7 5 23 23 N 1.37781 * 108.29994 * 179.97438 * 4 3 2 24 24 H 0.96999 * 125.38853 * 180.02562 * 23 4 3 25 25 C 1.34259 * 109.21867 * 0.02562 * 23 4 3 26 26 C 1.50701 * 125.80373 * 180.02562 * 25 23 4 27 27 C 1.38216 * 108.39405 * 359.72714 * 25 23 4 28 28 C 1.47390 * 126.46162 * 180.27150 * 27 25 23 29 29 N 1.34776 * 120.00362 * 90.18594 * 28 27 25 30 30 O 1.21618 * 119.99834 * 270.18860 * 28 27 25 31 31 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 32 32 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 33 33 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 35 35 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 36 36 H 0.96998 * 119.99992 * 359.97438 * 7 5 4 37 37 H 1.08994 * 113.61686 * 203.66336 * 10 8 7 38 38 H 1.09004 * 113.61477 * 334.56556 * 10 8 7 39 39 H 0.97002 * 120.00555 * 72.51539 * 13 11 10 40 40 H 0.96999 * 120.00310 * 180.02562 * 17 16 14 41 41 H 1.09003 * 113.60873 * 25.43426 * 22 8 7 42 42 H 1.09001 * 113.61418 * 156.33250 * 22 8 7 43 43 H 1.09008 * 109.46938 * 89.97481 * 26 25 23 44 44 H 1.08994 * 109.47154 * 209.97391 * 26 25 23 45 45 H 1.08998 * 109.47220 * 329.97478 * 26 25 23 46 46 H 0.96996 * 119.99893 * 0.02562 * 29 28 27 47 47 H 0.97002 * 119.99795 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3030 2.1853 1.0961 5 6 2.1557 1.7651 2.4951 6 8 1.7596 0.6444 2.7552 7 7 2.4581 2.6211 3.4912 8 6 2.3105 2.2019 4.8872 9 1 1.5746 1.4082 5.0153 10 6 3.6487 1.9205 5.5907 11 6 3.6624 3.4100 5.9836 12 1 4.0186 3.5909 6.9977 13 7 4.3065 4.2746 4.9917 14 6 5.5369 4.8164 5.2518 15 1 6.0323 4.6067 6.1882 16 6 6.1475 5.6352 4.3117 17 7 7.3299 6.1564 4.5618 18 14 5.2909 5.9974 2.6916 19 1 4.4492 7.2121 2.8375 20 1 6.3082 6.2242 1.6338 21 1 4.4345 4.8439 2.3159 22 6 2.1295 3.3738 5.8664 23 7 2.7397 3.4192 0.6659 24 1 3.0005 4.1549 1.2418 25 6 2.7469 3.4421 -0.6765 26 6 3.1601 4.6089 -1.5361 27 6 2.3175 2.2113 -1.1360 28 6 2.1799 1.8018 -2.5451 29 7 3.2172 1.2251 -3.1837 30 8 1.1302 1.9844 -3.1317 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 2.7735 3.5146 3.2838 37 1 3.5612 1.2453 6.4417 38 1 4.4507 1.6403 4.9076 39 1 3.8615 4.4631 4.1506 40 1 7.7564 6.7289 3.9051 41 1 1.7056 4.2661 5.4057 42 1 1.6272 3.0952 6.7928 43 1 4.2285 4.5470 -1.7436 44 1 2.6057 4.5833 -2.4742 45 1 2.9451 5.5403 -1.0122 46 1 4.0542 1.0792 -2.7159 47 1 3.1264 0.9553 -4.1110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022195203.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:01 Heat of formation + Delta-G solvation = -29.225088 kcal Electronic energy + Delta-G solvation = -29886.746474 eV Core-core repulsion = 25876.744107 eV Total energy + Delta-G solvation = -4010.002367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.92779 -41.13999 -39.96752 -39.21498 -35.76646 -35.33115 -34.57584 -34.26824 -32.76200 -32.26971 -31.09153 -28.25110 -26.60858 -26.40873 -25.29616 -24.39927 -23.74956 -22.25149 -21.16347 -20.73275 -20.16553 -19.53932 -19.39693 -18.11134 -17.43120 -17.20953 -16.89576 -16.62803 -16.46365 -16.11609 -15.70713 -15.41775 -15.24531 -15.16800 -15.08218 -14.76637 -14.70469 -14.45257 -13.88369 -13.79140 -13.73516 -13.63197 -13.37626 -13.26363 -13.00526 -12.90942 -12.66062 -12.24966 -12.14250 -11.98961 -11.87679 -11.77367 -11.36011 -11.25626 -11.02015 -10.91629 -10.66643 -10.17465 -10.01559 -9.38007 -9.26180 -8.05592 -5.41502 0.26310 1.05426 1.14566 1.35429 1.40754 1.49921 1.83154 1.95050 2.15722 2.42751 2.75144 3.22943 3.38497 3.59148 3.63964 3.69496 3.81297 3.87870 3.95585 4.21735 4.23150 4.26312 4.28778 4.47626 4.53836 4.58215 4.68748 4.73274 4.76099 4.86654 4.90437 4.92778 4.99065 5.04204 5.16820 5.23451 5.27103 5.30203 5.42261 5.55997 5.64005 5.76648 5.89492 6.10429 6.17832 6.33422 6.41998 6.98397 7.01621 7.33095 7.74679 7.93069 9.15874 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.004438 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.257508 B = 6307.877990 C = 8213.028871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.032 4.032 4 C -0.079 4.079 5 C 0.589 3.411 6 O -0.548 6.548 7 N -0.707 5.707 8 C 0.122 3.878 9 H 0.107 0.893 10 C -0.176 4.176 11 C 0.146 3.854 12 H 0.070 0.930 13 N -0.729 5.729 14 C -0.236 4.236 15 H 0.057 0.943 16 C -0.069 4.069 17 N -0.982 5.982 18 Si 0.967 3.033 19 H -0.272 1.272 20 H -0.292 1.292 21 H -0.257 1.257 22 C -0.143 4.143 23 N -0.525 5.525 24 H 0.421 0.579 25 C 0.112 3.888 26 C -0.103 4.103 27 C -0.248 4.248 28 C 0.609 3.391 29 N -0.825 5.825 30 O -0.581 6.581 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.392 0.608 37 H 0.110 0.890 38 H 0.043 0.957 39 H 0.358 0.642 40 H 0.258 0.742 41 H 0.072 0.928 42 H 0.132 0.868 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.416 0.584 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.050 -8.127 -12.040 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.099 4.099 3 C -0.041 4.041 4 C -0.190 4.190 5 C 0.378 3.622 6 O -0.426 6.426 7 N -0.358 5.358 8 C 0.017 3.983 9 H 0.125 0.875 10 C -0.218 4.218 11 C 0.037 3.963 12 H 0.088 0.912 13 N -0.372 5.372 14 C -0.367 4.367 15 H 0.075 0.925 16 C -0.260 4.260 17 N -0.632 5.632 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.218 1.218 21 H -0.183 1.183 22 C -0.182 4.182 23 N -0.122 5.122 24 H 0.262 0.738 25 C -0.012 4.012 26 C -0.160 4.160 27 C -0.258 4.258 28 C 0.393 3.607 29 N -0.388 5.388 30 O -0.461 6.461 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.228 0.772 37 H 0.128 0.872 38 H 0.061 0.939 39 H 0.193 0.807 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.150 0.850 43 H 0.121 0.879 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.246 0.754 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.804 -8.568 -11.757 18.734 hybrid contribution 0.928 1.093 -0.593 1.552 sum -10.876 -7.475 -12.350 18.075 Atomic orbital electron populations 1.21544 0.94288 1.02173 1.00824 1.20149 0.96494 0.90161 1.03085 1.19707 0.98525 0.96476 0.89357 1.19761 1.17409 0.88190 0.93591 1.17157 0.76977 0.84709 0.83346 1.90756 1.48106 1.20022 1.83729 1.45823 1.67193 1.16433 1.06373 1.21946 0.98419 0.98770 0.79148 0.87517 1.24231 0.96784 0.99903 1.00863 1.21541 0.92622 0.89345 0.92837 0.91158 1.42442 1.19332 1.57405 1.17997 1.19069 0.93996 1.21835 1.01806 0.92475 1.25624 0.97508 1.00127 1.02742 1.69892 1.17645 1.38329 1.37348 0.85337 0.77795 0.77928 0.79481 1.19779 1.21799 1.18329 1.23797 0.96575 0.97450 1.00402 1.41927 1.50228 1.13013 1.07060 0.73759 1.21150 1.00037 0.97134 0.82844 1.20749 1.03865 0.92918 0.98495 1.19204 1.17702 0.95738 0.93125 1.17307 0.83056 0.75693 0.84683 1.43663 1.15675 1.62470 1.16995 1.90806 1.29711 1.56941 1.68624 0.93933 0.93523 0.90909 0.90176 0.90384 0.77180 0.87164 0.93851 0.80690 0.93282 0.90915 0.84976 0.87888 0.88754 0.89255 0.75361 0.75496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.89 71.98 0.71 -2.58 16 2 C -0.06 -1.58 5.69 29.85 0.17 -1.41 16 3 C -0.03 -0.90 5.46 -19.55 -0.11 -1.00 16 4 C -0.08 -2.31 6.99 40.01 0.28 -2.03 16 5 C 0.59 18.82 7.79 86.48 0.67 19.49 16 6 O -0.55 -19.30 14.31 -4.27 -0.06 -19.36 16 7 N -0.71 -21.17 5.12 -443.88 -2.27 -23.44 16 8 C 0.12 3.39 4.30 45.52 0.20 3.59 16 9 H 0.11 2.86 7.50 -2.39 -0.02 2.84 16 10 C -0.18 -5.41 7.70 31.21 0.24 -5.17 16 11 C 0.15 4.91 4.57 45.61 0.21 5.12 16 12 H 0.07 2.44 8.10 -2.39 -0.02 2.42 16 13 N -0.73 -30.30 4.99 -320.01 -1.60 -31.90 16 14 C -0.24 -12.52 10.45 84.03 0.88 -11.64 16 15 H 0.06 3.39 8.06 -2.91 -0.02 3.36 16 16 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 17 N -0.98 -59.68 13.97 21.65 0.30 -59.38 16 18 Si 0.97 39.54 27.73 68.60 1.90 41.44 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.26 -8.48 4.49 99.48 0.45 -8.04 16 22 C -0.14 -3.58 7.58 31.12 0.24 -3.34 16 23 N -0.52 -13.38 5.91 -171.67 -1.01 -14.40 16 24 H 0.42 10.16 6.32 -92.71 -0.59 9.57 16 25 C 0.11 2.57 7.20 42.18 0.30 2.87 16 26 C -0.10 -1.66 10.23 71.24 0.73 -0.93 16 27 C -0.25 -6.24 5.89 -20.12 -0.12 -6.36 16 28 C 0.61 14.31 7.27 86.65 0.63 14.94 16 29 N -0.82 -11.57 8.87 -175.90 -1.56 -13.13 16 30 O -0.58 -18.15 17.94 -4.09 -0.07 -18.23 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 2.29 6.41 -2.39 -0.02 2.27 16 35 H 0.08 1.74 8.04 -2.39 -0.02 1.72 16 36 H 0.39 11.64 5.03 -92.71 -0.47 11.17 16 37 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.36 13.66 3.22 -92.71 -0.30 13.36 16 40 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.09 1.46 7.94 -2.39 -0.02 1.44 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 46 H 0.42 4.17 8.81 -92.71 -0.82 3.36 16 47 H 0.41 4.26 8.93 -92.71 -0.83 3.43 16 Total: -1.00 -74.60 383.99 -1.07 -75.67 By element: Atomic # 1 Polarization: 56.68 SS G_CDS: -2.20 Total: 54.49 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.50 Total: 8.24 kcal Atomic # 7 Polarization: -136.11 SS G_CDS: -6.14 Total: -142.25 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.13 Total: -37.59 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 1.90 Total: 41.44 kcal Total: -74.60 -1.07 -75.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022195203.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.443 kcal (2) G-P(sol) polarization free energy of solvation -74.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds