Wall clock time and date at job start Tue Mar 31 2020 18:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47401 * 2 1 4 4 N 1.31880 * 119.93651 * 270.01884 * 3 2 1 5 5 N 1.28268 * 122.62700 * 179.97438 * 4 3 2 6 6 C 1.32482 * 122.22235 * 0.02562 * 5 4 3 7 7 O 1.35443 * 120.25738 * 179.97438 * 6 5 4 8 8 C 1.40455 * 119.49160 * 359.69970 * 6 5 4 9 9 C 1.47825 * 121.17949 * 180.30657 * 8 6 5 10 10 O 1.21550 * 119.99895 * 270.25409 * 9 8 6 11 11 N 1.34778 * 120.00212 * 90.25759 * 9 8 6 12 12 C 1.46496 * 119.99746 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.46775 * 180.02562 * 12 11 9 14 14 H 1.08996 * 112.96591 * 53.32726 * 13 12 11 15 15 C 1.53953 * 113.76563 * 185.00158 * 13 12 11 16 16 C 1.53949 * 86.28622 * 137.91023 * 15 13 12 17 17 N 1.47578 * 86.11822 * 336.39016 * 16 15 13 18 18 C 1.36933 * 134.49756 * 204.63998 * 17 16 15 19 19 H 1.07995 * 120.00476 * 180.02562 * 18 17 16 20 20 C 1.38821 * 119.99768 * 0.02562 * 18 17 16 21 21 N 1.31619 * 119.99503 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00247 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47087 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47309 * 119.99975 * 22 20 18 25 25 H 1.48495 * 109.47567 * 240.00266 * 22 20 18 26 26 C 1.38486 * 119.93310 * 89.99643 * 3 2 1 27 27 C 1.50706 * 121.05418 * 0.02562 * 26 3 2 28 28 C 1.53000 * 109.47116 * 90.00016 * 27 26 3 29 29 H 1.09000 * 109.47178 * 299.99967 * 1 2 3 30 30 H 1.09005 * 109.46779 * 60.00146 * 1 2 3 31 31 H 1.08998 * 109.46840 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47619 * 239.99877 * 2 1 3 33 33 H 1.09004 * 109.46637 * 120.00388 * 2 1 3 34 34 H 0.96699 * 114.00494 * 89.99624 * 7 6 5 35 35 H 0.96998 * 119.99816 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47488 * 300.00124 * 12 11 9 37 37 H 1.08995 * 109.47118 * 60.00669 * 12 11 9 38 38 H 1.09004 * 113.73681 * 252.25005 * 15 13 12 39 39 H 1.08993 * 113.73992 * 23.45810 * 15 13 12 40 40 H 1.08995 * 113.77106 * 90.69243 * 16 15 13 41 41 H 1.09005 * 113.76734 * 221.97785 * 16 15 13 42 42 H 0.97004 * 119.99434 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.46646 * 209.99429 * 27 26 3 44 44 H 1.09000 * 109.47248 * 330.00147 * 27 26 3 45 45 H 1.09000 * 109.47214 * 300.00167 * 28 27 26 46 46 H 1.09008 * 109.47142 * 59.99333 * 28 27 26 47 47 H 1.08992 * 109.47123 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2514 2.0413 -1.1428 5 7 2.6781 3.2495 -1.2031 6 6 2.9312 3.9642 -0.1167 7 8 3.3812 5.2370 -0.2266 8 6 2.7237 3.3940 1.1500 9 6 2.9875 4.1599 2.3866 10 8 4.0900 4.1283 2.8974 11 7 2.0056 4.8930 2.9477 12 6 2.2670 5.6515 4.1734 13 6 0.9956 6.3899 4.5971 14 1 0.1304 5.7325 4.6824 15 6 1.1919 7.3177 5.8099 16 6 0.3201 8.3324 5.0481 17 7 0.7370 7.6204 3.8245 18 6 0.8417 7.9635 2.5030 19 1 1.1827 7.2359 1.7815 20 6 0.5095 9.2468 2.0907 21 7 0.0945 10.1337 2.9701 22 14 0.6530 9.7152 0.2881 23 1 1.1394 8.5474 -0.4896 24 1 -0.6781 10.1300 -0.2230 25 1 1.6113 10.8404 0.1437 26 6 2.2627 2.0723 1.2001 27 6 2.0195 1.3830 2.5181 28 6 3.2973 0.6694 2.9638 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.6791 5.9011 -0.2583 35 1 1.1257 4.9178 2.5403 36 1 2.5708 4.9677 4.9661 37 1 3.0631 6.3733 3.9913 38 1 0.7331 6.9454 6.7259 39 1 2.2228 7.6417 5.9521 40 1 -0.7446 8.2470 5.2649 41 1 0.6854 9.3577 5.1080 42 1 -0.1380 11.0303 2.6820 43 1 1.7357 2.1218 3.2675 44 1 1.2171 0.6540 2.4043 45 1 3.5813 -0.0694 2.2144 46 1 4.0998 1.3983 3.0776 47 1 3.1216 0.1712 3.9172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038316055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:13 Heat of formation + Delta-G solvation = 24.063975 kcal Electronic energy + Delta-G solvation = -29880.377947 eV Core-core repulsion = 25872.686367 eV Total energy + Delta-G solvation = -4007.691580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.69514 -39.44427 -38.05960 -37.90578 -35.99285 -34.29917 -33.90508 -32.29492 -31.38961 -30.18336 -28.27867 -27.86765 -25.72621 -25.29811 -23.47770 -23.21003 -22.05322 -22.00073 -20.53563 -19.28492 -19.02664 -18.36448 -17.69750 -16.63792 -16.30325 -15.74332 -15.45235 -15.26145 -15.07929 -14.67708 -14.47879 -14.20465 -14.01584 -13.84942 -13.74395 -13.35671 -13.03572 -12.96744 -12.78446 -12.40044 -12.22955 -12.00874 -11.89769 -11.58715 -11.54517 -11.42892 -11.24170 -11.12777 -11.02745 -10.83601 -10.69678 -10.46065 -10.06765 -10.01045 -9.84554 -9.63960 -9.60731 -9.39247 -8.90567 -8.84607 -7.00150 -5.86855 -3.19922 0.32189 0.54136 2.47346 2.96753 3.15475 3.30369 3.31228 3.32341 3.39630 3.83864 4.09429 4.23489 4.32533 4.46785 4.66480 4.79459 4.81680 4.90110 4.96726 5.01231 5.15584 5.21185 5.27419 5.33964 5.40946 5.50687 5.51630 5.55963 5.56875 5.71500 5.75085 5.79137 5.82588 5.89016 5.92580 6.01798 6.19158 6.29417 6.48906 6.54071 6.67359 7.12640 7.24625 7.30489 7.48950 7.54541 7.87274 8.18094 8.46096 8.92456 9.60277 10.48465 11.29648 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.004009 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.476515 B = 6983.041156 C = 8181.943220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.070 4.070 3 C 0.060 3.940 4 N -0.205 5.205 5 N -0.255 5.255 6 C 0.293 3.707 7 O -0.465 6.465 8 C -0.140 4.140 9 C 0.569 3.431 10 O -0.523 6.523 11 N -0.702 5.702 12 C 0.122 3.878 13 C 0.125 3.875 14 H 0.050 0.950 15 C -0.155 4.155 16 C 0.159 3.841 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.075 0.925 20 C -0.004 4.004 21 N -0.916 5.916 22 Si 0.908 3.092 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.289 1.289 26 C -0.028 4.028 27 C -0.092 4.092 28 C -0.150 4.150 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.415 0.585 35 H 0.403 0.597 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.027 0.973 41 H 0.074 0.926 42 H 0.254 0.746 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -19.706 1.100 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.085 4.085 4 N -0.050 5.050 5 N -0.107 5.107 6 C 0.107 3.893 7 O -0.272 6.272 8 C -0.155 4.155 9 C 0.352 3.648 10 O -0.399 6.399 11 N -0.352 5.352 12 C -0.002 4.002 13 C 0.018 3.982 14 H 0.067 0.933 15 C -0.194 4.194 16 C 0.034 3.966 17 N -0.328 5.328 18 C -0.350 4.350 19 H 0.093 0.907 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.738 3.262 23 H -0.207 1.207 24 H -0.218 1.218 25 H -0.216 1.216 26 C -0.039 4.039 27 C -0.130 4.130 28 C -0.207 4.207 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.275 0.725 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.293 -19.637 -0.406 19.684 hybrid contribution -0.825 0.949 0.129 1.264 sum 0.468 -18.688 -0.278 18.696 Atomic orbital electron populations 1.21762 0.93542 1.02594 1.02758 1.20489 0.96930 0.89046 1.04415 1.22714 0.97602 0.98919 0.89288 1.72812 1.06726 1.01129 1.24324 1.73064 1.09992 1.01195 1.26423 1.20900 0.91612 0.88648 0.88124 1.84730 1.35765 1.11663 1.95073 1.21463 1.01946 0.96329 0.95791 1.17609 0.85036 0.79395 0.82747 1.90812 1.22681 1.63785 1.62627 1.45983 1.13851 1.47202 1.28124 1.21897 0.99923 0.94027 0.84336 1.22512 0.93525 0.90480 0.91728 0.93294 1.23775 1.01469 0.98698 0.95442 1.22194 0.94550 0.96966 0.82898 1.46060 1.76612 1.06574 1.03576 1.18868 1.38353 0.95719 0.82045 0.90700 1.24766 1.01436 0.96284 0.97670 1.69821 1.49894 1.04407 1.32115 0.86143 0.77331 0.78407 0.84281 1.20663 1.21768 1.21566 1.21084 0.93491 0.91704 0.97664 1.20733 1.00079 1.00266 0.91927 1.21770 0.96731 1.00724 1.01471 0.92344 0.91884 0.91382 0.89162 0.89392 0.72450 0.76230 0.91798 0.90475 0.92743 0.90420 0.95540 0.90765 0.93611 0.89788 0.89005 0.92247 0.91436 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.78 37.16 0.36 -0.63 16 2 C -0.07 -0.53 5.57 -27.89 -0.16 -0.69 16 3 C 0.06 0.70 6.11 -82.48 -0.50 0.19 16 4 N -0.21 -2.97 11.40 33.56 0.38 -2.59 16 5 N -0.26 -4.16 11.52 30.73 0.35 -3.81 16 6 C 0.29 4.71 7.88 -16.44 -0.13 4.58 16 7 O -0.47 -7.61 13.09 -18.02 -0.24 -7.84 16 8 C -0.14 -2.07 5.69 -104.45 -0.59 -2.66 16 9 C 0.57 9.27 5.61 -12.34 -0.07 9.20 16 10 O -0.52 -10.19 17.10 5.32 0.09 -10.10 16 11 N -0.70 -10.82 5.52 -61.26 -0.34 -11.16 16 12 C 0.12 2.01 5.54 -4.04 -0.02 1.99 16 13 C 0.13 2.20 4.33 -66.86 -0.29 1.91 16 14 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 15 C -0.15 -2.63 7.86 -25.80 -0.20 -2.83 16 16 C 0.16 3.46 7.51 -2.97 -0.02 3.43 16 17 N -0.60 -13.73 3.57 -170.73 -0.61 -14.34 16 18 C -0.22 -5.60 10.51 -15.06 -0.16 -5.76 16 19 H 0.08 1.77 7.80 -52.49 -0.41 1.36 16 20 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 21 N -0.92 -25.90 11.39 55.49 0.63 -25.26 16 22 Si 0.91 21.12 29.55 -169.99 -5.02 16.10 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C -0.03 -0.33 5.22 -103.84 -0.54 -0.88 16 27 C -0.09 -0.84 5.07 -27.88 -0.14 -0.98 16 28 C -0.15 -1.32 9.78 37.16 0.36 -0.95 16 29 H 0.06 0.38 7.47 -51.93 -0.39 -0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.51 6.01 -51.93 -0.31 0.20 16 34 H 0.41 5.52 9.06 45.56 0.41 5.93 16 35 H 0.40 5.91 8.46 -40.82 -0.35 5.57 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.08 0.82 7.24 -51.93 -0.38 0.45 16 44 H 0.09 0.60 6.04 -51.93 -0.31 0.29 16 45 H 0.06 0.46 7.46 -51.93 -0.39 0.07 16 46 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -32.79 390.96 -7.33 -40.12 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.27 Total: 7.27 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.20 Total: 5.71 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.42 Total: -57.16 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.14 Total: -17.94 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.79 -7.33 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038316055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.185 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds