Wall clock time and date at job start Tue Mar 31 2020 18:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47401 * 2 1 4 4 N 1.31880 * 119.93651 * 270.01884 * 3 2 1 5 5 N 1.28268 * 122.62700 * 179.97438 * 4 3 2 6 6 C 1.32482 * 122.22235 * 0.02562 * 5 4 3 7 7 O 1.35443 * 120.25738 * 179.97438 * 6 5 4 8 8 C 1.40455 * 119.49160 * 359.69970 * 6 5 4 9 9 C 1.47825 * 121.17949 * 180.30657 * 8 6 5 10 10 O 1.21550 * 119.99895 * 270.25409 * 9 8 6 11 11 N 1.34778 * 120.00212 * 90.25759 * 9 8 6 12 12 C 1.46496 * 119.99746 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.46775 * 180.02562 * 12 11 9 14 14 H 1.08996 * 112.96591 * 53.32726 * 13 12 11 15 15 C 1.53953 * 113.76563 * 185.00158 * 13 12 11 16 16 C 1.53949 * 86.28622 * 137.91023 * 15 13 12 17 17 N 1.47578 * 86.11822 * 336.39016 * 16 15 13 18 18 C 1.36933 * 134.49756 * 204.63998 * 17 16 15 19 19 H 1.07995 * 120.00476 * 180.02562 * 18 17 16 20 20 C 1.38821 * 119.99768 * 0.02562 * 18 17 16 21 21 N 1.31619 * 119.99503 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00247 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47087 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47309 * 119.99975 * 22 20 18 25 25 H 1.48495 * 109.47567 * 240.00266 * 22 20 18 26 26 C 1.38486 * 119.93310 * 89.99643 * 3 2 1 27 27 C 1.50706 * 121.05418 * 0.02562 * 26 3 2 28 28 C 1.53000 * 109.47116 * 90.00016 * 27 26 3 29 29 H 1.09000 * 109.47178 * 299.99967 * 1 2 3 30 30 H 1.09005 * 109.46779 * 60.00146 * 1 2 3 31 31 H 1.08998 * 109.46840 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47619 * 239.99877 * 2 1 3 33 33 H 1.09004 * 109.46637 * 120.00388 * 2 1 3 34 34 H 0.96699 * 114.00494 * 89.99624 * 7 6 5 35 35 H 0.96998 * 119.99816 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47488 * 300.00124 * 12 11 9 37 37 H 1.08995 * 109.47118 * 60.00669 * 12 11 9 38 38 H 1.09004 * 113.73681 * 252.25005 * 15 13 12 39 39 H 1.08993 * 113.73992 * 23.45810 * 15 13 12 40 40 H 1.08995 * 113.77106 * 90.69243 * 16 15 13 41 41 H 1.09005 * 113.76734 * 221.97785 * 16 15 13 42 42 H 0.97004 * 119.99434 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.46646 * 209.99429 * 27 26 3 44 44 H 1.09000 * 109.47248 * 330.00147 * 27 26 3 45 45 H 1.09000 * 109.47214 * 300.00167 * 28 27 26 46 46 H 1.09008 * 109.47142 * 59.99333 * 28 27 26 47 47 H 1.08992 * 109.47123 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2514 2.0413 -1.1428 5 7 2.6781 3.2495 -1.2031 6 6 2.9312 3.9642 -0.1167 7 8 3.3812 5.2370 -0.2266 8 6 2.7237 3.3940 1.1500 9 6 2.9875 4.1599 2.3866 10 8 4.0900 4.1283 2.8974 11 7 2.0056 4.8930 2.9477 12 6 2.2670 5.6515 4.1734 13 6 0.9956 6.3899 4.5971 14 1 0.1304 5.7325 4.6824 15 6 1.1919 7.3177 5.8099 16 6 0.3201 8.3324 5.0481 17 7 0.7370 7.6204 3.8245 18 6 0.8417 7.9635 2.5030 19 1 1.1827 7.2359 1.7815 20 6 0.5095 9.2468 2.0907 21 7 0.0945 10.1337 2.9701 22 14 0.6530 9.7152 0.2881 23 1 1.1394 8.5474 -0.4896 24 1 -0.6781 10.1300 -0.2230 25 1 1.6113 10.8404 0.1437 26 6 2.2627 2.0723 1.2001 27 6 2.0195 1.3830 2.5181 28 6 3.2973 0.6694 2.9638 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.6791 5.9011 -0.2583 35 1 1.1257 4.9178 2.5403 36 1 2.5708 4.9677 4.9661 37 1 3.0631 6.3733 3.9913 38 1 0.7331 6.9454 6.7259 39 1 2.2228 7.6417 5.9521 40 1 -0.7446 8.2470 5.2649 41 1 0.6854 9.3577 5.1080 42 1 -0.1380 11.0303 2.6820 43 1 1.7357 2.1218 3.2675 44 1 1.2171 0.6540 2.4043 45 1 3.5813 -0.0694 2.2144 46 1 4.0998 1.3983 3.0776 47 1 3.1216 0.1712 3.9172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038316055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:12 Heat of formation + Delta-G solvation = -2.323538 kcal Electronic energy + Delta-G solvation = -29881.522195 eV Core-core repulsion = 25872.686367 eV Total energy + Delta-G solvation = -4008.835828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.77176 -40.77087 -39.57981 -39.08097 -36.93294 -35.68566 -34.75114 -34.19613 -32.31829 -31.07251 -29.94403 -29.41690 -26.79525 -26.15887 -25.29257 -24.24853 -23.27553 -22.92278 -21.76461 -20.86933 -20.15783 -19.53723 -18.97749 -18.23790 -17.54704 -17.08600 -16.97068 -16.31330 -16.08224 -15.93312 -15.67519 -15.55782 -15.19624 -15.03488 -14.71921 -14.61687 -14.47263 -13.73900 -13.62224 -13.58893 -13.34266 -13.30765 -13.04045 -12.98744 -12.71858 -12.61440 -12.58451 -12.33578 -12.27930 -12.01085 -11.93672 -11.81912 -11.67958 -11.48716 -11.23524 -11.10056 -10.84445 -10.63018 -10.57622 -10.20581 -8.88050 -7.87082 -5.18161 -0.74631 -0.49340 1.19507 1.42932 1.44528 1.51768 1.83938 1.99508 2.21555 2.45745 2.88555 3.17076 3.19380 3.35802 3.40745 3.51178 3.69671 3.94173 3.99629 4.08234 4.15432 4.22616 4.33219 4.35493 4.38875 4.42087 4.54651 4.60913 4.70739 4.72038 4.86335 4.93513 4.94044 5.03265 5.07703 5.07857 5.08785 5.19278 5.24545 5.29785 5.34106 5.43814 5.61682 5.75738 5.98274 6.13527 6.27150 6.90240 6.95402 7.38805 7.65980 8.60419 9.29916 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.004009 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.476515 B = 6983.041156 C = 8181.943220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.069 4.069 3 C 0.069 3.931 4 N -0.225 5.225 5 N -0.283 5.283 6 C 0.277 3.723 7 O -0.482 6.482 8 C -0.157 4.157 9 C 0.578 3.422 10 O -0.558 6.558 11 N -0.694 5.694 12 C 0.131 3.869 13 C 0.134 3.866 14 H 0.076 0.924 15 C -0.130 4.130 16 C 0.149 3.851 17 N -0.629 5.629 18 C -0.209 4.209 19 H 0.087 0.913 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.958 3.042 23 H -0.257 1.257 24 H -0.299 1.299 25 H -0.303 1.303 26 C -0.013 4.013 27 C -0.092 4.092 28 C -0.147 4.147 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.421 0.579 35 H 0.409 0.591 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.022 0.978 41 H 0.036 0.964 42 H 0.244 0.756 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.073 0.927 46 H 0.033 0.967 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 -23.664 2.052 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.077 4.077 4 N -0.069 5.069 5 N -0.133 5.133 6 C 0.091 3.909 7 O -0.291 6.291 8 C -0.172 4.172 9 C 0.363 3.637 10 O -0.437 6.437 11 N -0.343 5.343 12 C 0.007 3.993 13 C 0.028 3.972 14 H 0.093 0.907 15 C -0.168 4.168 16 C 0.023 3.977 17 N -0.355 5.355 18 C -0.337 4.337 19 H 0.105 0.895 20 C -0.261 4.261 21 N -0.603 5.603 22 Si 0.789 3.211 23 H -0.181 1.181 24 H -0.227 1.227 25 H -0.231 1.231 26 C -0.025 4.025 27 C -0.130 4.130 28 C -0.205 4.205 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.134 0.866 34 H 0.284 0.716 35 H 0.244 0.756 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.040 0.960 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.146 0.854 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.567 -23.642 0.530 23.654 hybrid contribution -0.615 2.032 -0.102 2.125 sum -0.048 -21.610 0.428 21.614 Atomic orbital electron populations 1.21777 0.92477 1.04051 1.02183 1.20730 0.97625 0.86303 1.06154 1.23383 0.95747 1.00362 0.88203 1.72746 1.07444 1.00712 1.25978 1.73001 1.11214 1.02217 1.26912 1.21006 0.92657 0.88526 0.88728 1.84699 1.36762 1.12377 1.95229 1.21386 1.03803 0.97641 0.94420 1.17707 0.84358 0.78945 0.82741 1.90792 1.24038 1.65034 1.63811 1.45893 1.13991 1.46598 1.27853 1.21711 0.98229 0.93920 0.85430 1.22691 0.94533 0.89438 0.90561 0.90680 1.23565 1.00655 0.96130 0.96500 1.22164 0.95047 0.96322 0.84139 1.46418 1.76615 1.09319 1.03197 1.19290 1.35342 0.95480 0.83614 0.89520 1.25450 1.03013 0.96897 1.00746 1.69996 1.52539 1.04291 1.33454 0.85298 0.76374 0.78287 0.81185 1.18135 1.22653 1.23056 1.21510 0.91224 0.90438 0.99346 1.20920 1.01388 1.00787 0.89860 1.21771 0.95273 1.00175 1.03239 0.91844 0.93611 0.88921 0.88568 0.86557 0.71650 0.75596 0.89163 0.93590 0.88640 0.90416 0.95994 0.94510 0.94730 0.90210 0.85382 0.90849 0.94791 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.78 71.98 0.70 -0.70 16 2 C -0.07 -0.79 5.57 29.85 0.17 -0.63 16 3 C 0.07 1.45 6.11 42.61 0.26 1.71 16 4 N -0.23 -6.32 11.40 -47.73 -0.54 -6.86 16 5 N -0.28 -9.26 11.52 -169.58 -1.95 -11.22 16 6 C 0.28 8.97 7.88 85.14 0.67 9.65 16 7 O -0.48 -16.14 13.09 -87.40 -1.14 -17.29 16 8 C -0.16 -4.53 5.69 -19.75 -0.11 -4.65 16 9 C 0.58 18.34 5.61 86.78 0.49 18.83 16 10 O -0.56 -21.59 17.10 -3.87 -0.07 -21.65 16 11 N -0.69 -20.30 5.52 -466.00 -2.57 -22.87 16 12 C 0.13 4.06 5.54 86.38 0.48 4.54 16 13 C 0.13 4.38 4.33 45.10 0.20 4.57 16 14 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 15 C -0.13 -4.09 7.86 31.26 0.25 -3.85 16 16 C 0.15 6.46 7.51 86.48 0.65 7.11 16 17 N -0.63 -28.37 3.57 -694.06 -2.48 -30.85 16 18 C -0.21 -10.51 10.51 84.04 0.88 -9.63 16 19 H 0.09 4.04 7.80 -2.91 -0.02 4.02 16 20 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 21 N -0.95 -55.89 11.39 21.65 0.25 -55.64 16 22 Si 0.96 44.35 29.55 68.60 2.03 46.37 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 25 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 26 C -0.01 -0.29 5.22 -19.36 -0.10 -0.39 16 27 C -0.09 -1.33 5.07 29.85 0.15 -1.18 16 28 C -0.15 -2.09 9.78 71.98 0.70 -1.39 16 29 H 0.06 0.55 7.47 -2.39 -0.02 0.54 16 30 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.12 0.72 6.01 -2.38 -0.01 0.70 16 34 H 0.42 11.53 9.06 -74.06 -0.67 10.86 16 35 H 0.41 11.20 8.46 -92.71 -0.78 10.42 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.08 2.48 8.10 -2.39 -0.02 2.46 16 40 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.04 1.86 7.16 -2.38 -0.02 1.84 16 42 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 43 H 0.08 1.28 7.24 -2.39 -0.02 1.26 16 44 H 0.13 0.96 6.04 -2.39 -0.01 0.95 16 45 H 0.07 0.83 7.46 -2.39 -0.02 0.81 16 46 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -75.03 390.96 -1.08 -76.11 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.44 Total: 23.15 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 5.85 Total: 20.75 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -7.31 Total: -127.44 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -1.21 Total: -38.94 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -75.03 -1.08 -76.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038316055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.789 kcal (2) G-P(sol) polarization free energy of solvation -75.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds