Wall clock time and date at job start Tue Mar 31 2020 17:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50701 * 109.47406 * 2 1 4 4 C 1.36354 * 126.48928 * 90.01941 * 3 2 1 5 5 C 1.46810 * 125.85366 * 0.02562 * 4 3 2 6 6 O 1.21679 * 119.99418 * 359.71166 * 5 4 3 7 7 N 1.34769 * 120.00348 * 179.70978 * 5 4 3 8 8 C 1.46500 * 120.00237 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46998 * 180.02562 * 8 7 5 10 10 H 1.08994 * 112.73834 * 56.24331 * 9 8 7 11 11 C 1.53496 * 113.46582 * 187.05715 * 9 8 7 12 12 C 1.53493 * 83.34145 * 140.84742 * 11 9 8 13 13 N 1.47063 * 113.46766 * 285.49539 * 9 8 7 14 14 C 1.36936 * 136.06005 * 38.06366 * 13 9 8 15 15 H 1.07999 * 119.99570 * 0.02562 * 14 13 9 16 16 C 1.38808 * 120.00333 * 180.02562 * 14 13 9 17 17 N 1.31620 * 119.99977 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00289 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47375 * 89.99310 * 18 16 14 20 20 H 1.48504 * 109.47193 * 209.99793 * 18 16 14 21 21 H 1.48506 * 109.46897 * 329.99469 * 18 16 14 22 22 N 1.37783 * 108.30040 * 179.73886 * 4 3 2 23 23 H 0.96995 * 125.39945 * 180.24790 * 22 4 3 24 24 C 1.34268 * 109.21225 * 0.23541 * 22 4 3 25 25 C 1.50709 * 125.80027 * 180.02562 * 24 22 4 26 26 C 1.38202 * 108.40075 * 359.97438 * 24 22 4 27 27 C 1.47387 * 126.46684 * 180.02562 * 26 24 22 28 28 N 1.34787 * 120.00112 * 269.98085 * 27 26 24 29 29 O 1.21612 * 120.00333 * 89.97904 * 27 26 24 30 30 H 1.09001 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47362 * 299.99599 * 1 2 3 32 32 H 1.09002 * 109.47317 * 59.99771 * 1 2 3 33 33 H 1.09000 * 109.47333 * 239.99900 * 2 1 3 34 34 H 1.09002 * 109.47317 * 120.00228 * 2 1 3 35 35 H 0.97010 * 119.99854 * 0.02562 * 7 5 4 36 36 H 1.08993 * 109.47452 * 60.00368 * 8 7 5 37 37 H 1.09000 * 109.47175 * 300.00158 * 8 7 5 38 38 H 1.08997 * 114.20724 * 254.43707 * 11 9 8 39 39 H 1.09004 * 114.20714 * 27.26076 * 11 9 8 40 40 H 1.09007 * 113.46571 * 219.14886 * 12 11 9 41 41 H 1.09000 * 113.46708 * 88.71593 * 12 11 9 42 42 H 0.97002 * 120.00230 * 180.02562 * 17 16 14 43 43 H 1.08993 * 109.46990 * 89.97279 * 25 24 22 44 44 H 1.08995 * 109.46710 * 209.96965 * 25 24 22 45 45 H 1.08998 * 109.47068 * 329.97175 * 25 24 22 46 46 H 0.96998 * 119.99905 * 359.97438 * 28 27 26 47 47 H 0.96997 * 119.99802 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3030 2.1851 1.0962 5 6 2.1555 1.7650 2.4952 6 8 1.7547 0.6459 2.7552 7 7 2.4639 2.6187 3.4913 8 6 2.3162 2.1996 4.8873 9 6 2.7294 3.3474 5.8109 10 1 2.1695 4.2631 5.6212 11 6 2.7744 2.9529 7.2936 12 6 4.0254 3.8422 7.3079 13 7 4.1842 3.5529 5.8748 14 6 5.2276 3.4981 4.9897 15 1 5.0451 3.2497 3.9546 16 6 6.5197 3.7619 5.4227 17 7 6.7420 4.0651 6.6841 18 14 7.9429 3.6878 4.2152 19 1 8.1415 5.0254 3.6013 20 1 9.1794 3.2834 4.9314 21 1 7.6394 2.6957 3.1526 22 7 2.7448 3.4173 0.6662 23 1 3.0097 4.1516 1.2419 24 6 2.7510 3.4406 -0.6763 25 6 3.1688 4.6058 -1.5359 26 6 2.3103 2.2140 -1.1359 27 6 2.1630 1.8079 -2.5451 28 7 0.9968 2.0162 -3.1880 29 8 3.0935 1.2850 -3.1278 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.7831 3.5110 3.2840 36 1 2.9514 1.3343 5.0761 37 1 1.2762 1.9356 5.0793 38 1 1.9442 3.3398 7.8844 39 1 2.9753 1.8960 7.4690 40 1 4.8330 3.4453 7.9231 41 1 3.8107 4.8900 7.5180 42 1 7.6450 4.2497 6.9867 43 1 4.2365 4.5392 -1.7443 44 1 2.6135 4.5830 -2.4735 45 1 2.9584 5.5380 -1.0116 46 1 0.2544 2.4329 -2.7232 47 1 0.8997 1.7486 -4.1153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038336856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:18 Heat of formation + Delta-G solvation = 10.891685 kcal Electronic energy + Delta-G solvation = -29338.806968 eV Core-core repulsion = 25330.544195 eV Total energy + Delta-G solvation = -4008.262773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80542 -39.33139 -38.78757 -38.01089 -34.72048 -33.82443 -33.64982 -32.32092 -31.70152 -30.08543 -28.42775 -27.96646 -26.58086 -23.93372 -23.55497 -23.30475 -22.03645 -20.99203 -19.73355 -19.47750 -19.06623 -18.34175 -17.29508 -16.72741 -16.43230 -15.81033 -15.55880 -15.43440 -15.05648 -14.53069 -14.31584 -14.21441 -13.99979 -13.93410 -13.71234 -13.53355 -13.25667 -13.03342 -12.90130 -12.75645 -12.36916 -12.05275 -11.94586 -11.60812 -11.21870 -11.20246 -11.07908 -10.88967 -10.83049 -10.64564 -10.28956 -10.07020 -9.91697 -9.83662 -9.73079 -9.31316 -8.93707 -8.89716 -8.74344 -8.14387 -6.99053 -5.85705 -3.18897 1.45035 2.20832 2.49560 2.86008 3.30513 3.34377 3.39203 3.39563 3.50859 3.65334 4.35191 4.49906 4.76901 4.89885 4.93870 5.10828 5.12722 5.23380 5.25311 5.31699 5.48062 5.49701 5.54627 5.57525 5.64218 5.75053 5.82338 5.83667 6.01826 6.06320 6.24752 6.29254 6.31653 6.34690 6.50221 6.52139 6.60716 6.62739 6.73941 6.78643 7.13468 7.17433 7.19756 7.30915 7.49358 7.76208 7.88517 8.16668 8.40899 8.93338 9.61259 10.53698 11.31192 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.003523 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.660641 B = 7945.998143 C = 9316.045814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 C -0.032 4.032 4 C -0.046 4.046 5 C 0.584 3.416 6 O -0.531 6.531 7 N -0.713 5.713 8 C 0.123 3.877 9 C 0.126 3.874 10 H 0.047 0.953 11 C -0.160 4.160 12 C 0.151 3.849 13 N -0.601 5.601 14 C -0.218 4.218 15 H 0.078 0.922 16 C -0.004 4.004 17 N -0.916 5.916 18 Si 0.906 3.094 19 H -0.289 1.289 20 H -0.288 1.288 21 H -0.280 1.280 22 N -0.522 5.522 23 H 0.422 0.578 24 C 0.098 3.902 25 C -0.095 4.095 26 C -0.235 4.235 27 C 0.605 3.395 28 N -0.850 5.850 29 O -0.539 6.539 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.396 0.604 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.254 0.746 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.402 0.598 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.213 1.294 -13.790 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 C -0.040 4.040 4 C -0.157 4.157 5 C 0.371 3.629 6 O -0.409 6.409 7 N -0.362 5.362 8 C -0.001 4.001 9 C 0.019 3.981 10 H 0.064 0.936 11 C -0.199 4.199 12 C 0.026 3.974 13 N -0.327 5.327 14 C -0.345 4.345 15 H 0.096 0.904 16 C -0.201 4.201 17 N -0.562 5.562 18 Si 0.736 3.264 19 H -0.216 1.216 20 H -0.214 1.214 21 H -0.206 1.206 22 N -0.117 5.117 23 H 0.261 0.739 24 C -0.024 4.024 25 C -0.152 4.152 26 C -0.245 4.245 27 C 0.389 3.611 28 N -0.413 5.413 29 O -0.415 6.415 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.229 0.771 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.231 0.769 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -14.378 0.266 -13.719 19.875 hybrid contribution 0.860 1.162 -0.581 1.558 sum -13.518 1.428 -14.300 19.730 Atomic orbital electron populations 1.21601 0.94747 1.01430 1.01396 1.20165 0.95945 0.90771 1.03522 1.19459 0.99643 0.95847 0.89097 1.19948 1.14672 0.86949 0.94177 1.17006 0.78089 0.85050 0.82773 1.90783 1.47321 1.19466 1.83306 1.45858 1.66731 1.16777 1.06878 1.21849 1.00277 0.99250 0.78731 1.22425 0.88059 0.94380 0.93283 0.93569 1.23658 0.99738 1.01252 0.95285 1.22030 0.93451 0.94757 0.87190 1.45659 0.99457 1.80759 1.06865 1.18781 0.84407 1.41107 0.90190 0.90449 1.24760 0.97133 1.01802 0.96408 1.69820 1.20145 1.52485 1.13766 0.86220 0.82443 0.77643 0.80097 1.21627 1.21437 1.20577 1.41621 1.50181 1.13536 1.06371 0.73946 1.20537 1.02281 0.96500 0.83122 1.20505 1.02978 0.93490 0.98262 1.19052 1.17263 0.95435 0.92788 1.17431 0.81953 0.76602 0.85076 1.43881 1.15415 1.65537 1.16488 1.90834 1.39839 1.42710 1.68104 0.92610 0.92348 0.93528 0.91651 0.88799 0.77086 0.90805 0.91992 0.92291 0.90110 0.90945 0.95739 0.93581 0.89722 0.89895 0.90631 0.76947 0.76959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.89 37.15 0.37 -1.16 16 2 C -0.07 -0.92 5.68 -27.89 -0.16 -1.07 16 3 C -0.03 -0.47 5.46 -104.14 -0.57 -1.04 16 4 C -0.05 -0.67 6.99 -82.40 -0.58 -1.25 16 5 C 0.58 9.79 7.79 -12.80 -0.10 9.69 16 6 O -0.53 -10.14 14.69 5.21 0.08 -10.06 16 7 N -0.71 -11.51 5.33 -61.58 -0.33 -11.84 16 8 C 0.12 2.12 5.52 -4.04 -0.02 2.10 16 9 C 0.13 2.30 4.10 -72.41 -0.30 2.01 16 10 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.16 -2.79 8.03 -26.22 -0.21 -3.01 16 12 C 0.15 3.35 7.39 -8.52 -0.06 3.28 16 13 N -0.60 -14.07 3.65 -177.03 -0.65 -14.72 16 14 C -0.22 -5.65 10.55 -15.06 -0.16 -5.81 16 15 H 0.08 1.93 7.50 -52.49 -0.39 1.53 16 16 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 17 N -0.92 -26.34 11.51 55.49 0.64 -25.70 16 18 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 N -0.52 -6.15 5.91 -5.61 -0.03 -6.18 16 23 H 0.42 4.13 8.14 -40.82 -0.33 3.79 16 24 C 0.10 1.10 7.20 -81.54 -0.59 0.51 16 25 C -0.09 -0.75 10.24 36.01 0.37 -0.38 16 26 C -0.24 -3.05 5.89 -105.02 -0.62 -3.66 16 27 C 0.61 7.54 7.27 -12.53 -0.09 7.45 16 28 N -0.85 -6.40 8.87 30.43 0.27 -6.13 16 29 O -0.54 -9.02 17.94 5.27 0.09 -8.92 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 34 H 0.09 1.49 6.41 -51.93 -0.33 1.15 16 35 H 0.40 5.92 7.45 -40.82 -0.30 5.61 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 40 H 0.07 1.81 7.12 -51.93 -0.37 1.44 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.57 7.93 -51.93 -0.41 0.16 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.40 2.12 8.81 -40.82 -0.36 1.76 16 47 H 0.40 2.36 8.93 -40.82 -0.36 2.00 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -34.91 394.49 -8.89 -43.80 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.07 Total: 9.66 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -2.81 Total: 7.46 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -0.10 Total: -64.57 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.17 Total: -18.98 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.91 -8.89 -43.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038336856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.693 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds