Wall clock time and date at job start Tue Mar 31 2020 17:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50701 * 109.47406 * 2 1 4 4 C 1.36354 * 126.48928 * 90.01941 * 3 2 1 5 5 C 1.46810 * 125.85366 * 0.02562 * 4 3 2 6 6 O 1.21679 * 119.99418 * 359.71166 * 5 4 3 7 7 N 1.34769 * 120.00348 * 179.70978 * 5 4 3 8 8 C 1.46500 * 120.00237 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.46998 * 180.02562 * 8 7 5 10 10 H 1.08994 * 112.73834 * 56.24331 * 9 8 7 11 11 C 1.53496 * 113.46582 * 187.05715 * 9 8 7 12 12 C 1.53493 * 83.34145 * 140.84742 * 11 9 8 13 13 N 1.47063 * 113.46766 * 285.49539 * 9 8 7 14 14 C 1.36936 * 136.06005 * 38.06366 * 13 9 8 15 15 H 1.07999 * 119.99570 * 0.02562 * 14 13 9 16 16 C 1.38808 * 120.00333 * 180.02562 * 14 13 9 17 17 N 1.31620 * 119.99977 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00289 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47375 * 89.99310 * 18 16 14 20 20 H 1.48504 * 109.47193 * 209.99793 * 18 16 14 21 21 H 1.48506 * 109.46897 * 329.99469 * 18 16 14 22 22 N 1.37783 * 108.30040 * 179.73886 * 4 3 2 23 23 H 0.96995 * 125.39945 * 180.24790 * 22 4 3 24 24 C 1.34268 * 109.21225 * 0.23541 * 22 4 3 25 25 C 1.50709 * 125.80027 * 180.02562 * 24 22 4 26 26 C 1.38202 * 108.40075 * 359.97438 * 24 22 4 27 27 C 1.47387 * 126.46684 * 180.02562 * 26 24 22 28 28 N 1.34787 * 120.00112 * 269.98085 * 27 26 24 29 29 O 1.21612 * 120.00333 * 89.97904 * 27 26 24 30 30 H 1.09001 * 109.47242 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47362 * 299.99599 * 1 2 3 32 32 H 1.09002 * 109.47317 * 59.99771 * 1 2 3 33 33 H 1.09000 * 109.47333 * 239.99900 * 2 1 3 34 34 H 1.09002 * 109.47317 * 120.00228 * 2 1 3 35 35 H 0.97010 * 119.99854 * 0.02562 * 7 5 4 36 36 H 1.08993 * 109.47452 * 60.00368 * 8 7 5 37 37 H 1.09000 * 109.47175 * 300.00158 * 8 7 5 38 38 H 1.08997 * 114.20724 * 254.43707 * 11 9 8 39 39 H 1.09004 * 114.20714 * 27.26076 * 11 9 8 40 40 H 1.09007 * 113.46571 * 219.14886 * 12 11 9 41 41 H 1.09000 * 113.46708 * 88.71593 * 12 11 9 42 42 H 0.97002 * 120.00230 * 180.02562 * 17 16 14 43 43 H 1.08993 * 109.46990 * 89.97279 * 25 24 22 44 44 H 1.08995 * 109.46710 * 209.96965 * 25 24 22 45 45 H 1.08998 * 109.47068 * 329.97175 * 25 24 22 46 46 H 0.96998 * 119.99905 * 359.97438 * 28 27 26 47 47 H 0.96997 * 119.99802 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3030 2.1851 1.0962 5 6 2.1555 1.7650 2.4952 6 8 1.7547 0.6459 2.7552 7 7 2.4639 2.6187 3.4913 8 6 2.3162 2.1996 4.8873 9 6 2.7294 3.3474 5.8109 10 1 2.1695 4.2631 5.6212 11 6 2.7744 2.9529 7.2936 12 6 4.0254 3.8422 7.3079 13 7 4.1842 3.5529 5.8748 14 6 5.2276 3.4981 4.9897 15 1 5.0451 3.2497 3.9546 16 6 6.5197 3.7619 5.4227 17 7 6.7420 4.0651 6.6841 18 14 7.9429 3.6878 4.2152 19 1 8.1415 5.0254 3.6013 20 1 9.1794 3.2834 4.9314 21 1 7.6394 2.6957 3.1526 22 7 2.7448 3.4173 0.6662 23 1 3.0097 4.1516 1.2419 24 6 2.7510 3.4406 -0.6763 25 6 3.1688 4.6058 -1.5359 26 6 2.3103 2.2140 -1.1359 27 6 2.1630 1.8079 -2.5451 28 7 0.9968 2.0162 -3.1880 29 8 3.0935 1.2850 -3.1278 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.7831 3.5110 3.2840 36 1 2.9514 1.3343 5.0761 37 1 1.2762 1.9356 5.0793 38 1 1.9442 3.3398 7.8844 39 1 2.9753 1.8960 7.4690 40 1 4.8330 3.4453 7.9231 41 1 3.8107 4.8900 7.5180 42 1 7.6450 4.2497 6.9867 43 1 4.2365 4.5392 -1.7443 44 1 2.6135 4.5830 -2.4735 45 1 2.9584 5.5380 -1.0116 46 1 0.2544 2.4329 -2.7232 47 1 0.8997 1.7486 -4.1153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038336856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:17 Heat of formation + Delta-G solvation = -16.187852 kcal Electronic energy + Delta-G solvation = -29339.981225 eV Core-core repulsion = 25330.544195 eV Total energy + Delta-G solvation = -4009.437030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.81613 -40.63019 -39.94168 -39.46618 -35.93186 -35.00747 -34.53882 -34.26640 -32.59227 -31.03556 -30.03491 -29.54708 -27.62701 -25.41114 -25.04602 -24.30300 -23.41037 -22.19266 -21.12462 -20.62873 -20.23352 -19.51982 -18.46755 -18.07538 -17.40998 -17.13701 -17.03009 -16.70914 -16.42458 -15.91813 -15.59474 -15.45221 -15.20840 -15.02906 -14.92399 -14.71245 -14.62738 -14.34284 -13.75558 -13.64346 -13.55926 -13.35070 -13.16182 -13.00099 -12.93027 -12.71550 -12.60321 -12.38310 -12.18359 -11.98885 -11.85929 -11.64221 -11.35892 -11.20635 -10.89864 -10.80193 -10.64544 -10.13330 -9.92713 -9.17202 -8.90678 -7.90199 -5.21267 0.36826 1.22218 1.39457 1.43360 1.49223 1.53847 1.91363 2.10284 2.29577 2.43674 2.79392 3.32416 3.42243 3.67510 3.76791 3.92829 3.95561 4.01193 4.14936 4.28697 4.33702 4.34148 4.51404 4.62986 4.63550 4.65265 4.68948 4.79105 4.81947 4.89101 5.01877 5.05666 5.09024 5.10226 5.27021 5.31429 5.35067 5.39388 5.53563 5.57903 5.69545 5.74095 5.92032 5.95612 6.27446 6.46303 6.51121 6.91362 7.12612 7.37002 7.62122 8.62004 9.27374 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.003523 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.660641 B = 7945.998143 C = 9316.045814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.039 4.039 4 C -0.071 4.071 5 C 0.583 3.417 6 O -0.562 6.562 7 N -0.710 5.710 8 C 0.132 3.868 9 C 0.134 3.866 10 H 0.072 0.928 11 C -0.135 4.135 12 C 0.142 3.858 13 N -0.629 5.629 14 C -0.205 4.205 15 H 0.085 0.915 16 C -0.066 4.066 17 N -0.951 5.951 18 Si 0.962 3.038 19 H -0.281 1.281 20 H -0.300 1.300 21 H -0.279 1.279 22 N -0.513 5.513 23 H 0.431 0.569 24 C 0.118 3.882 25 C -0.096 4.096 26 C -0.255 4.255 27 C 0.608 3.392 28 N -0.822 5.822 29 O -0.589 6.589 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.402 0.598 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.024 0.976 42 H 0.245 0.755 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.417 0.583 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.372 2.601 -15.615 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 C -0.047 4.047 4 C -0.182 4.182 5 C 0.371 3.629 6 O -0.441 6.441 7 N -0.360 5.360 8 C 0.008 3.992 9 C 0.028 3.972 10 H 0.090 0.910 11 C -0.174 4.174 12 C 0.017 3.983 13 N -0.355 5.355 14 C -0.334 4.334 15 H 0.102 0.898 16 C -0.259 4.259 17 N -0.601 5.601 18 Si 0.792 3.208 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.204 1.204 22 N -0.109 5.109 23 H 0.272 0.728 24 C -0.006 4.006 25 C -0.153 4.153 26 C -0.265 4.265 27 C 0.392 3.608 28 N -0.386 5.386 29 O -0.469 6.469 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.237 0.763 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.116 0.884 45 H 0.120 0.880 46 H 0.248 0.752 47 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -16.625 1.609 -15.558 22.826 hybrid contribution 1.423 0.760 -0.057 1.614 sum -15.202 2.370 -15.615 21.922 Atomic orbital electron populations 1.21537 0.92802 1.02256 1.01729 1.20128 0.97664 0.90577 1.02021 1.19648 0.99313 0.95993 0.89773 1.19630 1.17055 0.88479 0.93070 1.17260 0.77395 0.84590 0.83609 1.90763 1.48759 1.20671 1.83933 1.45780 1.66725 1.17037 1.06418 1.21645 1.00772 0.97579 0.79253 1.22572 0.85140 0.95399 0.94071 0.91026 1.23484 0.98435 1.00247 0.95193 1.22049 0.94554 0.95499 0.86219 1.45963 1.01505 1.80755 1.07274 1.19121 0.85199 1.38209 0.90839 0.89763 1.25447 0.99454 1.03334 0.97700 1.69992 1.19732 1.55024 1.15312 0.85314 0.79552 0.77713 0.78195 1.20807 1.22677 1.20438 1.41585 1.49654 1.12910 1.06795 0.72806 1.21101 0.99596 0.96898 0.82975 1.20685 1.03025 0.93076 0.98524 1.19184 1.18475 0.96009 0.92796 1.17385 0.82445 0.76127 0.84829 1.43628 1.14249 1.63786 1.16895 1.90816 1.41797 1.45270 1.69018 0.91603 0.93603 0.91432 0.91866 0.91444 0.76337 0.93951 0.89790 0.88108 0.90366 0.94746 0.95784 0.94559 0.89737 0.88420 0.88030 0.75213 0.75602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.89 71.98 0.71 -2.01 16 2 C -0.07 -1.82 5.68 29.84 0.17 -1.65 16 3 C -0.04 -1.09 5.46 -19.55 -0.11 -1.20 16 4 C -0.07 -2.03 6.99 40.01 0.28 -1.75 16 5 C 0.58 19.32 7.79 86.49 0.67 19.99 16 6 O -0.56 -21.66 14.69 -4.28 -0.06 -21.72 16 7 N -0.71 -22.10 5.33 -466.96 -2.49 -24.59 16 8 C 0.13 4.36 5.52 86.38 0.48 4.84 16 9 C 0.13 4.61 4.10 41.79 0.17 4.78 16 10 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 11 C -0.13 -4.41 8.03 30.93 0.25 -4.16 16 12 C 0.14 6.28 7.39 83.17 0.61 6.89 16 13 N -0.63 -29.10 3.65 -714.00 -2.61 -31.71 16 14 C -0.21 -10.63 10.55 84.03 0.89 -9.74 16 15 H 0.08 4.13 7.50 -2.91 -0.02 4.11 16 16 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 17 N -0.95 -56.21 11.51 21.65 0.25 -55.96 16 18 Si 0.96 45.30 29.55 68.60 2.03 47.33 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 N -0.51 -11.11 5.91 -171.66 -1.01 -12.12 16 23 H 0.43 7.45 8.14 -92.71 -0.75 6.69 16 24 C 0.12 2.38 7.20 42.18 0.30 2.68 16 25 C -0.10 -1.20 10.24 71.24 0.73 -0.47 16 26 C -0.26 -6.20 5.89 -20.12 -0.12 -6.32 16 27 C 0.61 14.14 7.27 86.65 0.63 14.77 16 28 N -0.82 -10.20 8.87 -175.90 -1.56 -11.76 16 29 O -0.59 -19.28 17.94 -4.07 -0.07 -19.36 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.73 8.05 -2.39 -0.02 1.71 16 34 H 0.07 2.22 6.41 -2.39 -0.02 2.20 16 35 H 0.40 11.35 7.45 -92.70 -0.69 10.66 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 40 H 0.03 1.76 7.12 -2.38 -0.02 1.75 16 41 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.10 0.97 7.93 -2.39 -0.02 0.95 16 45 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.42 3.01 8.81 -92.71 -0.82 2.19 16 47 H 0.41 3.75 8.93 -92.71 -0.83 2.92 16 Total: -1.00 -78.54 394.49 -1.44 -79.98 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -2.05 Total: 26.47 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: 6.14 Total: 23.45 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -7.42 Total: -136.15 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.14 Total: -41.08 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -78.54 -1.44 -79.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038336856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.791 kcal (2) G-P(sol) polarization free energy of solvation -78.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds