Wall clock time and date at job start Tue Mar 31 2020 18:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46906 * 2 1 4 4 N 1.31876 * 119.93455 * 90.00606 * 3 2 1 5 5 N 1.28273 * 122.62502 * 180.02562 * 4 3 2 6 6 C 1.32485 * 122.22114 * 359.97438 * 5 4 3 7 7 O 1.35444 * 120.25438 * 180.02562 * 6 5 4 8 8 C 1.40455 * 119.49398 * 359.97438 * 6 5 4 9 9 C 1.47816 * 121.17579 * 179.97438 * 8 6 5 10 10 O 1.21554 * 119.99988 * 90.00931 * 9 8 6 11 11 N 1.34779 * 120.00263 * 269.99775 * 9 8 6 12 12 C 1.46494 * 119.99829 * 0.02562 * 11 9 8 13 13 C 1.46504 * 120.00089 * 180.02562 * 11 9 8 14 14 C 1.53495 * 114.20492 * 120.00483 * 13 11 9 15 15 N 1.47064 * 87.98647 * 87.51761 * 14 13 11 16 16 C 1.36929 * 136.05710 * 207.07951 * 15 14 13 17 17 H 1.07999 * 119.99903 * 6.59853 * 16 15 14 18 18 C 1.38814 * 120.00235 * 186.58664 * 16 15 14 19 19 N 1.31624 * 119.99708 * 6.45052 * 18 16 15 20 20 Si 1.86801 * 120.00252 * 186.44323 * 18 16 15 21 21 H 1.48498 * 109.47005 * 265.02404 * 20 18 16 22 22 H 1.48497 * 109.46829 * 25.02180 * 20 18 16 23 23 H 1.48501 * 109.47055 * 145.02388 * 20 18 16 24 24 C 1.47067 * 87.88549 * 27.33957 * 15 14 13 25 25 C 1.38489 * 119.93220 * 270.26010 * 3 2 1 26 26 C 1.50699 * 121.05611 * 0.02562 * 25 3 2 27 27 C 1.53002 * 109.47194 * 270.22213 * 26 25 3 28 28 H 1.09004 * 109.47066 * 300.00084 * 1 2 3 29 29 H 1.09004 * 109.47446 * 59.99794 * 1 2 3 30 30 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46738 * 240.00090 * 2 1 3 32 32 H 1.08992 * 109.47240 * 119.99893 * 2 1 3 33 33 H 0.96699 * 114.00017 * 269.97714 * 7 6 5 34 34 H 1.09001 * 109.47301 * 269.99894 * 12 11 9 35 35 H 1.09010 * 109.46951 * 29.99895 * 12 11 9 36 36 H 1.08999 * 109.47178 * 149.99412 * 12 11 9 37 37 H 1.09002 * 113.27922 * 346.93508 * 13 11 9 38 38 H 1.08996 * 113.46596 * 332.73658 * 14 13 11 39 39 H 1.09006 * 113.46151 * 202.29850 * 14 13 11 40 40 H 0.97002 * 119.99801 * 179.97438 * 19 18 16 41 41 H 1.09005 * 113.46771 * 87.43754 * 24 15 14 42 42 H 1.09002 * 113.46911 * 217.87594 * 24 15 14 43 43 H 1.08997 * 109.47213 * 30.22542 * 26 25 3 44 44 H 1.08999 * 109.46814 * 150.22510 * 26 25 3 45 45 H 1.08999 * 109.46997 * 60.00410 * 27 26 25 46 46 H 1.09005 * 109.46865 * 180.02562 * 27 26 25 47 47 H 1.08997 * 109.47309 * 300.00270 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2517 2.0413 1.1428 5 7 2.6784 3.2495 1.2030 6 6 2.9309 3.9644 0.1166 7 8 3.3809 5.2372 0.2266 8 6 2.7296 3.3920 -1.1501 9 6 2.9989 4.1560 -2.3866 10 8 4.1025 4.1202 -2.8949 11 7 2.0208 4.8920 -2.9505 12 6 0.6908 4.9354 -2.3378 13 6 2.2876 5.6487 -4.1763 14 6 1.4048 5.2497 -5.3669 15 7 0.4103 6.2218 -4.8886 16 6 -0.9488 6.3651 -4.9744 17 1 -1.5478 5.5809 -5.4133 18 6 -1.5567 7.5181 -4.4969 19 7 -0.8201 8.5256 -4.0788 20 14 -3.4201 7.6399 -4.4478 21 1 -3.9043 8.3182 -5.6769 22 1 -4.0034 6.2764 -4.3725 23 1 -3.8338 8.4219 -3.2551 24 6 1.5185 6.9757 -4.2834 25 6 2.2575 2.0742 -1.2002 26 6 2.0077 1.3873 -2.5180 27 6 3.2814 0.6689 -2.9682 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.6787 5.9012 0.2583 34 1 0.0752 4.1352 -2.7487 35 1 0.7832 4.8056 -1.2594 36 1 0.2246 5.8976 -2.5493 37 1 3.3489 5.7256 -4.4127 38 1 1.0583 4.2172 -5.3236 39 1 1.8363 5.5100 -6.3336 40 1 -1.2449 9.3314 -3.7455 41 1 1.9798 7.6910 -4.9644 42 1 1.2688 7.4137 -3.3170 43 1 1.2027 0.6616 -2.4027 44 1 1.7247 2.1280 -3.2659 45 1 3.5643 -0.0718 -2.2203 46 1 3.1008 0.1725 -3.9217 47 1 4.0864 1.3946 -3.0836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042827934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:01 Heat of formation + Delta-G solvation = 45.433035 kcal Electronic energy + Delta-G solvation = -30599.261968 eV Core-core repulsion = 26592.497021 eV Total energy + Delta-G solvation = -4006.764948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.73742 -39.82937 -38.09110 -37.82181 -35.94920 -34.36452 -33.73329 -32.23584 -31.19650 -30.16133 -28.12208 -26.55792 -25.88404 -25.27329 -24.74908 -23.67676 -22.54882 -21.99077 -20.49876 -19.05750 -18.61475 -18.29449 -17.31235 -16.72762 -16.36772 -15.79758 -15.33215 -15.10713 -14.93498 -14.65693 -14.45100 -14.10018 -13.87473 -13.81658 -13.76780 -12.92660 -12.84272 -12.77858 -12.70965 -12.65269 -12.39303 -12.22551 -12.00127 -11.82281 -11.51835 -11.45826 -11.38129 -11.21679 -10.98661 -10.96758 -10.77179 -10.36460 -10.26851 -10.05910 -9.91892 -9.60974 -9.58705 -9.42274 -8.94898 -8.24417 -7.06271 -5.95241 -3.27106 0.36521 0.55066 2.48554 2.93997 3.10131 3.27343 3.29927 3.33408 3.35468 3.86395 4.14349 4.17938 4.31284 4.45814 4.63584 4.84368 4.85733 4.96810 5.04371 5.08761 5.18991 5.24687 5.30055 5.31725 5.39367 5.43865 5.47674 5.56970 5.65911 5.76635 5.80530 5.87027 5.93005 5.95257 5.97079 6.03203 6.08878 6.30227 6.37360 6.49381 6.69852 6.98378 7.06577 7.16381 7.32519 7.61739 7.78834 8.18609 8.46745 8.86504 9.52682 10.45890 11.22606 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.003955 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.496404 B = 7077.618649 C = 7454.254354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.070 4.070 3 C 0.064 3.936 4 N -0.208 5.208 5 N -0.255 5.255 6 C 0.286 3.714 7 O -0.466 6.466 8 C -0.127 4.127 9 C 0.568 3.432 10 O -0.527 6.527 11 N -0.564 5.564 12 C 0.083 3.917 13 C 0.080 3.920 14 C 0.105 3.895 15 N -0.605 5.605 16 C -0.220 4.220 17 H 0.081 0.919 18 C -0.004 4.004 19 N -0.917 5.917 20 Si 0.908 3.092 21 H -0.288 1.288 22 H -0.280 1.280 23 H -0.289 1.289 24 C 0.153 3.847 25 C -0.027 4.027 26 C -0.094 4.094 27 C -0.148 4.148 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.409 0.591 34 H 0.056 0.944 35 H 0.039 0.961 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.255 0.745 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 -15.122 5.861 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.081 4.081 4 N -0.053 5.053 5 N -0.107 5.107 6 C 0.100 3.900 7 O -0.272 6.272 8 C -0.143 4.143 9 C 0.353 3.647 10 O -0.404 6.404 11 N -0.294 5.294 12 C -0.059 4.059 13 C -0.025 4.025 14 C -0.022 4.022 15 N -0.332 5.332 16 C -0.347 4.347 17 H 0.099 0.901 18 C -0.201 4.201 19 N -0.564 5.564 20 Si 0.738 3.262 21 H -0.215 1.215 22 H -0.205 1.205 23 H -0.215 1.215 24 C 0.027 3.973 25 C -0.039 4.039 26 C -0.131 4.131 27 C -0.206 4.206 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.269 0.731 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.799 -15.127 7.250 17.448 hybrid contribution -1.465 0.865 -1.592 2.330 sum 3.334 -14.263 5.658 15.702 Atomic orbital electron populations 1.21766 0.93479 1.02620 1.02823 1.20495 0.96984 0.89023 1.04398 1.22717 0.97297 0.98860 0.89248 1.72802 1.07057 1.01109 1.24298 1.73027 1.09989 1.01297 1.26357 1.20829 0.92569 0.88463 0.88169 1.84742 1.35513 1.11747 1.95160 1.21369 1.00974 0.96262 0.95653 1.17667 0.84763 0.79342 0.82916 1.90791 1.22684 1.63739 1.63171 1.47327 1.11182 1.45239 1.25629 1.21891 0.83028 1.06565 0.94461 1.22848 0.99224 0.95962 0.84429 1.22833 0.89762 0.94938 0.94662 1.45879 1.00664 1.25406 1.61216 1.18909 0.79087 1.01243 1.35487 0.90124 1.24804 0.97894 0.95446 1.01942 1.69838 1.33706 1.05174 1.47648 0.86167 0.84989 0.77609 0.77402 1.21549 1.20504 1.21545 1.22403 0.85618 0.90758 0.98522 1.21078 0.93316 0.91801 0.97679 1.20741 1.00006 1.00367 0.92018 1.21762 0.96763 1.00607 1.01442 0.91910 0.92229 0.91385 0.89365 0.89186 0.73096 0.92527 0.94214 0.86680 0.87921 0.94000 0.93790 0.93452 0.93759 0.91493 0.89036 0.89603 0.92338 0.91283 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.78 37.16 0.36 -0.73 16 2 C -0.07 -0.57 5.57 -27.88 -0.16 -0.72 16 3 C 0.06 0.76 6.11 -82.48 -0.50 0.25 16 4 N -0.21 -2.96 11.40 33.56 0.38 -2.57 16 5 N -0.26 -3.97 11.52 30.73 0.35 -3.62 16 6 C 0.29 4.34 7.47 -16.44 -0.12 4.22 16 7 O -0.47 -6.65 13.09 -18.02 -0.24 -6.89 16 8 C -0.13 -1.90 3.96 -104.46 -0.41 -2.31 16 9 C 0.57 9.51 5.48 -12.34 -0.07 9.44 16 10 O -0.53 -10.27 16.61 5.32 0.09 -10.18 16 11 N -0.56 -9.41 3.12 -174.68 -0.54 -9.96 16 12 C 0.08 1.35 9.35 59.84 0.56 1.91 16 13 C 0.08 1.44 4.69 -67.68 -0.32 1.12 16 14 C 0.11 1.99 8.31 -8.51 -0.07 1.92 16 15 N -0.61 -13.72 2.47 -184.62 -0.46 -14.17 16 16 C -0.22 -5.52 10.34 -15.06 -0.16 -5.67 16 17 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 18 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 19 N -0.92 -24.98 11.81 55.49 0.66 -24.33 16 20 Si 0.91 20.50 29.56 -169.99 -5.02 15.48 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.15 3.25 6.25 -8.37 -0.05 3.20 16 25 C -0.03 -0.34 5.22 -103.84 -0.54 -0.88 16 26 C -0.09 -0.98 5.06 -27.88 -0.14 -1.12 16 27 C -0.15 -1.45 9.78 37.16 0.36 -1.09 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.45 7.43 -51.93 -0.39 0.07 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.57 6.00 -51.93 -0.31 0.26 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.41 4.11 9.06 45.56 0.41 4.53 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.04 0.56 6.56 -51.92 -0.34 0.22 16 36 H 0.11 2.28 5.38 -51.93 -0.28 2.00 16 37 H 0.10 1.82 7.29 -51.93 -0.38 1.45 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.53 6.71 -51.93 -0.35 1.19 16 43 H 0.09 0.73 6.03 -51.93 -0.31 0.42 16 44 H 0.09 1.04 7.24 -51.93 -0.38 0.67 16 45 H 0.06 0.49 7.43 -51.93 -0.39 0.10 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -31.29 382.34 -6.43 -37.72 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.06 Total: 3.40 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -1.35 Total: 9.36 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.39 Total: -54.65 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.15 Total: -17.07 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.29 -6.43 -37.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042827934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.152 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds