Wall clock time and date at job start Tue Mar 31 2020 18:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46906 * 2 1 4 4 N 1.31876 * 119.93455 * 90.00606 * 3 2 1 5 5 N 1.28273 * 122.62502 * 180.02562 * 4 3 2 6 6 C 1.32485 * 122.22114 * 359.97438 * 5 4 3 7 7 O 1.35444 * 120.25438 * 180.02562 * 6 5 4 8 8 C 1.40455 * 119.49398 * 359.97438 * 6 5 4 9 9 C 1.47816 * 121.17579 * 179.97438 * 8 6 5 10 10 O 1.21554 * 119.99988 * 90.00931 * 9 8 6 11 11 N 1.34779 * 120.00263 * 269.99775 * 9 8 6 12 12 C 1.46494 * 119.99829 * 0.02562 * 11 9 8 13 13 C 1.46504 * 120.00089 * 180.02562 * 11 9 8 14 14 C 1.53495 * 114.20492 * 120.00483 * 13 11 9 15 15 N 1.47064 * 87.98647 * 87.51761 * 14 13 11 16 16 C 1.36929 * 136.05710 * 207.07951 * 15 14 13 17 17 H 1.07999 * 119.99903 * 6.59853 * 16 15 14 18 18 C 1.38814 * 120.00235 * 186.58664 * 16 15 14 19 19 N 1.31624 * 119.99708 * 6.45052 * 18 16 15 20 20 Si 1.86801 * 120.00252 * 186.44323 * 18 16 15 21 21 H 1.48498 * 109.47005 * 265.02404 * 20 18 16 22 22 H 1.48497 * 109.46829 * 25.02180 * 20 18 16 23 23 H 1.48501 * 109.47055 * 145.02388 * 20 18 16 24 24 C 1.47067 * 87.88549 * 27.33957 * 15 14 13 25 25 C 1.38489 * 119.93220 * 270.26010 * 3 2 1 26 26 C 1.50699 * 121.05611 * 0.02562 * 25 3 2 27 27 C 1.53002 * 109.47194 * 270.22213 * 26 25 3 28 28 H 1.09004 * 109.47066 * 300.00084 * 1 2 3 29 29 H 1.09004 * 109.47446 * 59.99794 * 1 2 3 30 30 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46738 * 240.00090 * 2 1 3 32 32 H 1.08992 * 109.47240 * 119.99893 * 2 1 3 33 33 H 0.96699 * 114.00017 * 269.97714 * 7 6 5 34 34 H 1.09001 * 109.47301 * 269.99894 * 12 11 9 35 35 H 1.09010 * 109.46951 * 29.99895 * 12 11 9 36 36 H 1.08999 * 109.47178 * 149.99412 * 12 11 9 37 37 H 1.09002 * 113.27922 * 346.93508 * 13 11 9 38 38 H 1.08996 * 113.46596 * 332.73658 * 14 13 11 39 39 H 1.09006 * 113.46151 * 202.29850 * 14 13 11 40 40 H 0.97002 * 119.99801 * 179.97438 * 19 18 16 41 41 H 1.09005 * 113.46771 * 87.43754 * 24 15 14 42 42 H 1.09002 * 113.46911 * 217.87594 * 24 15 14 43 43 H 1.08997 * 109.47213 * 30.22542 * 26 25 3 44 44 H 1.08999 * 109.46814 * 150.22510 * 26 25 3 45 45 H 1.08999 * 109.46997 * 60.00410 * 27 26 25 46 46 H 1.09005 * 109.46865 * 180.02562 * 27 26 25 47 47 H 1.08997 * 109.47309 * 300.00270 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2517 2.0413 1.1428 5 7 2.6784 3.2495 1.2030 6 6 2.9309 3.9644 0.1166 7 8 3.3809 5.2372 0.2266 8 6 2.7296 3.3920 -1.1501 9 6 2.9989 4.1560 -2.3866 10 8 4.1025 4.1202 -2.8949 11 7 2.0208 4.8920 -2.9505 12 6 0.6908 4.9354 -2.3378 13 6 2.2876 5.6487 -4.1763 14 6 1.4048 5.2497 -5.3669 15 7 0.4103 6.2218 -4.8886 16 6 -0.9488 6.3651 -4.9744 17 1 -1.5478 5.5809 -5.4133 18 6 -1.5567 7.5181 -4.4969 19 7 -0.8201 8.5256 -4.0788 20 14 -3.4201 7.6399 -4.4478 21 1 -3.9043 8.3182 -5.6769 22 1 -4.0034 6.2764 -4.3725 23 1 -3.8338 8.4219 -3.2551 24 6 1.5185 6.9757 -4.2834 25 6 2.2575 2.0742 -1.2002 26 6 2.0077 1.3873 -2.5180 27 6 3.2814 0.6689 -2.9682 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.6787 5.9012 0.2583 34 1 0.0752 4.1352 -2.7487 35 1 0.7832 4.8056 -1.2594 36 1 0.2246 5.8976 -2.5493 37 1 3.3489 5.7256 -4.4127 38 1 1.0583 4.2172 -5.3236 39 1 1.8363 5.5100 -6.3336 40 1 -1.2449 9.3314 -3.7455 41 1 1.9798 7.6910 -4.9644 42 1 1.2688 7.4137 -3.3170 43 1 1.2027 0.6616 -2.4027 44 1 1.7247 2.1280 -3.2659 45 1 3.5643 -0.0718 -2.2203 46 1 3.1008 0.1725 -3.9217 47 1 4.0864 1.3946 -3.0836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042827934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:00 Heat of formation + Delta-G solvation = 22.761799 kcal Electronic energy + Delta-G solvation = -30600.245067 eV Core-core repulsion = 26592.497021 eV Total energy + Delta-G solvation = -4007.748046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.83353 -41.24921 -39.47302 -39.03090 -36.92058 -35.78874 -34.70272 -34.03275 -32.19626 -31.05399 -29.87298 -27.94460 -27.10490 -26.40760 -26.15294 -25.08495 -23.68617 -22.92111 -21.84447 -20.14653 -20.04593 -19.45249 -18.79513 -18.28719 -17.63804 -17.04804 -16.82343 -16.37617 -16.05753 -15.81735 -15.65158 -15.47448 -15.17864 -14.91458 -14.57978 -14.49613 -14.24661 -14.13685 -13.70899 -13.59086 -13.43115 -13.30991 -13.28694 -13.03495 -12.80201 -12.78195 -12.61101 -12.47228 -12.30874 -12.02101 -11.99490 -11.81721 -11.76718 -11.62250 -11.35607 -11.04220 -10.88088 -10.60158 -10.54652 -9.70665 -8.93092 -7.91247 -5.22702 -0.72024 -0.46781 1.15549 1.47891 1.49888 1.57641 1.67237 2.01080 2.23370 2.47492 2.89016 3.01284 3.18671 3.31845 3.43214 3.48807 3.70122 3.72031 3.96652 4.09459 4.16344 4.22433 4.33883 4.35091 4.39983 4.42557 4.47444 4.57597 4.58502 4.70939 4.79413 4.84533 4.92639 4.94486 4.95141 5.03755 5.08575 5.13034 5.19951 5.22100 5.27993 5.44324 5.44873 5.55666 5.87426 6.19473 6.24271 6.81665 6.90605 7.40880 7.60366 8.59256 9.26897 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.003955 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.496404 B = 7077.618649 C = 7454.254354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C 0.072 3.928 4 N -0.224 5.224 5 N -0.278 5.278 6 C 0.279 3.721 7 O -0.478 6.478 8 C -0.147 4.147 9 C 0.579 3.421 10 O -0.556 6.556 11 N -0.562 5.562 12 C 0.097 3.903 13 C 0.101 3.899 14 C 0.111 3.889 15 N -0.623 5.623 16 C -0.217 4.217 17 H 0.086 0.914 18 C -0.055 4.055 19 N -0.949 5.949 20 Si 0.967 3.033 21 H -0.294 1.294 22 H -0.265 1.265 23 H -0.297 1.297 24 C 0.155 3.845 25 C -0.017 4.017 26 C -0.093 4.093 27 C -0.145 4.145 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.423 0.577 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.248 0.752 41 H 0.033 0.967 42 H 0.044 0.956 43 H 0.124 0.876 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -18.227 5.630 19.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.074 4.074 4 N -0.068 5.068 5 N -0.128 5.128 6 C 0.093 3.907 7 O -0.287 6.287 8 C -0.163 4.163 9 C 0.365 3.635 10 O -0.434 6.434 11 N -0.291 5.291 12 C -0.046 4.046 13 C -0.004 4.004 14 C -0.015 4.015 15 N -0.349 5.349 16 C -0.345 4.345 17 H 0.103 0.897 18 C -0.248 4.248 19 N -0.598 5.598 20 Si 0.796 3.204 21 H -0.222 1.222 22 H -0.189 1.189 23 H -0.224 1.224 24 C 0.028 3.972 25 C -0.029 4.029 26 C -0.131 4.131 27 C -0.202 4.202 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.285 0.715 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.142 0.858 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.028 -18.257 7.027 19.973 hybrid contribution -1.190 1.744 -1.532 2.609 sum 2.838 -16.512 5.495 17.632 Atomic orbital electron populations 1.21775 0.92639 1.03991 1.02115 1.20715 0.97497 0.86492 1.06120 1.23302 0.95744 1.00237 0.88099 1.72745 1.07532 1.00829 1.25647 1.72992 1.11062 1.02115 1.26678 1.20886 0.92879 0.88673 0.88290 1.84700 1.36680 1.12095 1.95185 1.21268 1.03180 0.97381 0.94425 1.17802 0.83927 0.78741 0.82999 1.90772 1.23755 1.64722 1.64185 1.47289 1.11497 1.45109 1.25244 1.21701 0.82503 1.04676 0.95671 1.22548 0.99078 0.93935 0.84865 1.22910 0.88650 0.94713 0.95263 1.46040 1.00631 1.26431 1.61843 1.19197 0.80446 1.00936 1.33915 0.89652 1.25453 1.01369 0.95461 1.02562 1.69996 1.34935 1.05528 1.49342 0.85236 0.80847 0.77862 0.76448 1.22162 1.18923 1.22415 1.22308 0.85895 0.91912 0.97038 1.21425 0.91560 0.90803 0.99103 1.20872 1.01435 1.00579 0.90172 1.21754 0.95186 1.00170 1.03119 0.93323 0.92285 0.88993 0.86869 0.88279 0.71483 0.91977 0.92302 0.90063 0.87231 0.92719 0.92572 0.94308 0.94910 0.93798 0.85752 0.91214 0.90505 0.89351 0.94580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.78 71.98 0.70 -0.94 16 2 C -0.07 -0.87 5.57 29.85 0.17 -0.70 16 3 C 0.07 1.55 6.11 42.61 0.26 1.81 16 4 N -0.22 -6.09 11.40 -47.72 -0.54 -6.63 16 5 N -0.28 -8.54 11.52 -169.57 -1.95 -10.49 16 6 C 0.28 8.43 7.47 85.13 0.64 9.07 16 7 O -0.48 -13.84 13.09 -87.41 -1.14 -14.99 16 8 C -0.15 -4.28 3.96 -19.76 -0.08 -4.36 16 9 C 0.58 19.08 5.48 86.78 0.48 19.55 16 10 O -0.56 -21.54 16.61 -3.88 -0.06 -21.60 16 11 N -0.56 -18.52 3.12 -824.84 -2.57 -21.09 16 12 C 0.10 3.12 9.35 127.77 1.20 4.31 16 13 C 0.10 3.60 4.69 45.55 0.21 3.82 16 14 C 0.11 4.07 8.31 83.18 0.69 4.76 16 15 N -0.62 -28.16 2.47 -738.03 -1.82 -29.98 16 16 C -0.22 -10.81 10.34 84.04 0.87 -9.94 16 17 H 0.09 4.09 7.84 -2.91 -0.02 4.07 16 18 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 19 N -0.95 -52.95 11.81 21.65 0.26 -52.70 16 20 Si 0.97 42.26 29.56 68.60 2.03 44.28 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 24 C 0.16 6.71 6.25 83.27 0.52 7.23 16 25 C -0.02 -0.40 5.22 -19.36 -0.10 -0.50 16 26 C -0.09 -1.67 5.06 29.85 0.15 -1.52 16 27 C -0.14 -2.41 9.78 71.98 0.70 -1.70 16 28 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 0.67 7.43 -2.38 -0.02 0.65 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.11 0.89 6.00 -2.39 -0.01 0.87 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.42 8.75 9.06 -74.06 -0.67 8.08 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 1.65 6.56 -2.38 -0.02 1.63 16 36 H 0.08 3.26 5.38 -2.39 -0.01 3.25 16 37 H 0.11 3.84 7.29 -2.39 -0.02 3.82 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 41 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.04 2.09 6.71 -2.39 -0.02 2.08 16 43 H 0.12 1.42 6.03 -2.39 -0.01 1.41 16 44 H 0.07 1.53 7.24 -2.39 -0.02 1.51 16 45 H 0.08 0.99 7.43 -2.39 -0.02 0.97 16 46 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -68.31 382.34 1.40 -66.92 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.34 Total: 17.75 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 6.87 Total: 28.54 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -6.64 Total: -120.90 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.21 Total: -36.59 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -68.31 1.40 -66.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042827934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.681 kcal (2) G-P(sol) polarization free energy of solvation -68.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds