Wall clock time and date at job start Tue Mar 31 2020 17:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50694 * 109.47507 * 2 1 4 4 C 1.38547 * 120.01847 * 125.25909 * 3 2 1 5 5 C 1.40078 * 117.81794 * 180.24289 * 4 3 2 6 6 C 1.48135 * 121.14466 * 179.78606 * 5 4 3 7 7 O 1.21515 * 119.99905 * 173.24155 * 6 5 4 8 8 N 1.34772 * 120.00364 * 353.23742 * 6 5 4 9 9 C 1.46498 * 120.00622 * 180.02562 * 8 6 5 10 10 C 1.52990 * 109.47687 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.68070 * 301.00312 * 10 9 8 12 12 C 1.53295 * 109.68308 * 180.48299 * 10 9 8 13 13 O 1.42970 * 109.22408 * 187.97722 * 12 10 9 14 14 C 1.42961 * 114.16472 * 62.57782 * 13 12 10 15 15 C 1.53292 * 109.22459 * 297.42108 * 14 13 12 16 16 N 1.47157 * 109.67919 * 61.52018 * 10 9 8 17 17 C 1.36931 * 120.98271 * 350.23403 * 16 10 9 18 18 H 1.08004 * 120.00072 * 28.80598 * 17 16 10 19 19 C 1.38814 * 120.00329 * 208.80813 * 17 16 10 20 20 N 1.31620 * 119.99495 * 16.12452 * 19 17 16 21 21 Si 1.86799 * 120.00273 * 196.12101 * 19 17 16 22 22 H 1.48500 * 109.46945 * 60.00119 * 21 19 17 23 23 H 1.48500 * 109.46719 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47260 * 300.00168 * 21 19 17 25 25 C 1.39765 * 117.70707 * 359.51230 * 5 4 3 26 26 C 1.50704 * 120.17269 * 180.23163 * 25 5 4 27 27 N 1.31890 * 119.65498 * 0.25111 * 25 5 4 28 28 N 1.28274 * 122.33171 * 0.02562 * 27 25 5 29 29 H 1.08992 * 109.47429 * 59.99811 * 1 2 3 30 30 H 1.09003 * 109.47630 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47359 * 299.99835 * 1 2 3 32 32 H 1.09000 * 109.46947 * 239.99509 * 2 1 3 33 33 H 1.09001 * 109.47230 * 120.00266 * 2 1 3 34 34 H 1.07999 * 121.09188 * 0.02562 * 4 3 2 35 35 H 0.96999 * 119.99883 * 359.97438 * 8 6 5 36 36 H 1.09006 * 109.46915 * 59.99561 * 9 8 6 37 37 H 1.08999 * 109.47159 * 300.00422 * 9 8 6 38 38 H 1.09000 * 109.51437 * 307.90033 * 12 10 9 39 39 H 1.08997 * 109.51481 * 68.00234 * 12 10 9 40 40 H 1.09005 * 109.51188 * 57.34699 * 14 13 12 41 41 H 1.08997 * 109.51272 * 177.49785 * 14 13 12 42 42 H 1.09005 * 109.68182 * 172.02462 * 15 14 13 43 43 H 1.08994 * 109.68390 * 292.57834 * 15 14 13 44 44 H 0.97003 * 119.99843 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.46926 * 83.30849 * 26 25 5 46 46 H 1.08998 * 109.47017 * 203.30921 * 26 25 5 47 47 H 1.08997 * 109.46575 * 323.30281 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9163 1.8433 0.9796 5 6 3.3496 3.1747 0.9387 6 6 4.2907 3.7056 1.9521 7 8 4.7488 4.8243 1.8287 8 7 4.6387 2.9480 3.0109 9 6 5.5689 3.4731 4.0135 10 6 5.7935 2.4213 5.1015 11 1 4.8419 2.1670 5.5682 12 6 6.7571 2.9706 6.1597 13 8 7.1060 1.9229 7.0678 14 6 7.7993 0.8296 6.4614 15 6 6.8891 0.1707 5.4188 16 7 6.3927 1.2151 4.5085 17 6 6.4860 1.0692 3.1502 18 1 6.5719 1.9407 2.5181 19 6 6.4702 -0.1988 2.5856 20 7 6.0539 -1.2284 3.2919 21 14 7.0395 -0.4438 0.8234 22 1 8.4546 -0.0120 0.6959 23 1 6.9261 -1.8796 0.4618 24 1 6.1911 0.3653 -0.0879 25 6 2.8681 3.9834 -0.0946 26 6 3.3023 5.4231 -0.1947 27 7 2.0316 3.4801 -0.9813 28 7 1.6343 2.2613 -0.9352 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.2573 1.1693 1.7514 35 1 4.2727 2.0551 3.1097 36 1 5.1499 4.3745 4.4609 37 1 6.5196 3.7123 3.5370 38 1 7.6575 3.3452 5.6728 39 1 6.2745 3.7811 6.7058 40 1 8.7035 1.1964 5.9756 41 1 8.0662 0.0992 7.2252 42 1 7.4546 -0.5703 4.8536 43 1 6.0481 -0.3109 5.9175 44 1 6.0431 -2.1146 2.8975 45 1 4.2631 5.4781 -0.7063 46 1 2.5586 5.9886 -0.7562 47 1 3.3988 5.8438 0.8062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051041590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:25 Heat of formation + Delta-G solvation = -0.010518 kcal Electronic energy + Delta-G solvation = -30262.348111 eV Core-core repulsion = 26253.612583 eV Total energy + Delta-G solvation = -4008.735528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.24610 -39.37881 -38.42096 -35.68911 -35.06537 -33.84132 -33.43823 -31.97917 -31.20258 -30.51136 -27.87368 -27.33968 -26.27567 -25.00014 -23.59156 -23.37217 -22.48438 -21.64691 -20.25049 -19.76231 -17.74108 -17.43814 -16.56607 -16.09662 -15.77713 -15.54166 -15.48657 -15.03201 -14.74528 -14.68201 -14.49213 -14.13883 -13.98608 -13.79571 -13.60171 -13.22248 -13.01515 -12.89068 -12.78315 -12.30551 -12.09298 -11.95973 -11.82903 -11.69792 -11.23557 -11.22188 -10.97399 -10.92317 -10.74135 -10.55214 -10.41529 -10.15471 -10.14926 -10.07513 -9.77432 -9.42032 -9.33144 -9.07695 -8.81545 -8.51607 -6.91968 -6.06396 -3.52704 0.46560 0.93341 2.97531 3.17414 3.25336 3.29369 3.35751 3.71039 3.96983 4.20572 4.33844 4.41523 4.50152 4.75628 4.90382 4.99639 5.07831 5.11406 5.16678 5.23592 5.42134 5.53366 5.58840 5.62952 5.69664 5.72215 5.79746 5.85436 5.88035 5.92377 5.95934 6.02875 6.04749 6.08672 6.14109 6.20567 6.30724 6.38453 6.41992 6.59583 6.81577 6.92888 7.33980 7.54647 7.74663 7.86305 8.11519 8.44581 8.75021 8.89514 9.51327 10.09818 10.99623 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.004586 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.799616 B = 6103.597763 C = 7256.146973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C 0.060 3.940 4 C -0.071 4.071 5 C -0.125 4.125 6 C 0.555 3.445 7 O -0.540 6.540 8 N -0.682 5.682 9 C 0.135 3.865 10 C 0.124 3.876 11 H 0.043 0.957 12 C 0.056 3.944 13 O -0.391 6.391 14 C 0.035 3.965 15 C 0.143 3.857 16 N -0.591 5.591 17 C -0.262 4.262 18 H 0.073 0.927 19 C 0.013 3.987 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.282 1.282 25 C 0.112 3.888 26 C -0.100 4.100 27 N -0.250 5.250 28 N -0.227 5.227 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.162 0.838 35 H 0.415 0.585 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.031 0.969 44 H 0.257 0.743 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 4.301 -0.022 7.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.084 4.084 4 C -0.101 4.101 5 C -0.139 4.139 6 C 0.340 3.660 7 O -0.420 6.420 8 N -0.333 5.333 9 C 0.011 3.989 10 C 0.017 3.983 11 H 0.060 0.940 12 C -0.023 4.023 13 O -0.310 6.310 14 C -0.043 4.043 15 C 0.018 3.982 16 N -0.316 5.316 17 C -0.391 4.391 18 H 0.091 0.909 19 C -0.188 4.188 20 N -0.537 5.537 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.208 1.208 25 C -0.032 4.032 26 C -0.158 4.158 27 N -0.092 5.092 28 N -0.069 5.069 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.179 0.821 35 H 0.254 0.746 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.226 5.148 -1.293 8.182 hybrid contribution 1.280 -1.200 0.058 1.755 sum -4.946 3.948 -1.235 6.448 Atomic orbital electron populations 1.21690 0.93800 1.02042 1.02612 1.20479 0.97107 0.89052 1.04290 1.22812 0.94804 0.98615 0.92217 1.22780 0.93409 0.95274 0.98645 1.21161 0.99726 0.94879 0.98147 1.17801 0.81376 0.85234 0.81590 1.90694 1.55418 1.19140 1.76729 1.45932 1.45413 1.19127 1.22877 1.21267 0.93395 0.95478 0.88779 1.21437 0.95590 0.88832 0.92423 0.93998 1.22853 0.98000 0.89556 0.91870 1.87814 1.77304 1.30882 1.34984 1.23339 0.95158 0.88709 0.97074 1.21408 0.95561 0.91176 0.90050 1.44098 1.68408 1.16720 1.02420 1.19191 1.45630 0.92379 0.81880 0.90916 1.25027 0.99683 0.96662 0.97403 1.70007 1.47457 0.99506 1.36704 0.86582 0.79580 0.77134 0.84871 1.20779 1.21266 1.20837 1.23069 0.91837 0.98718 0.89611 1.20904 1.01516 0.88054 1.05328 1.73000 1.09633 1.05570 1.20971 1.72678 1.17662 0.97547 1.19051 0.91587 0.91930 0.92815 0.89443 0.89290 0.82066 0.74633 0.91765 0.90923 0.93398 0.89806 0.94033 0.90141 0.89116 0.95135 0.93238 0.89680 0.91044 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.77 37.15 0.36 -1.16 16 2 C -0.07 -0.86 6.35 -27.89 -0.18 -1.03 16 3 C 0.06 0.91 6.25 -82.46 -0.52 0.39 16 4 C -0.07 -1.12 9.29 -38.78 -0.36 -1.48 16 5 C -0.12 -2.08 5.92 -104.57 -0.62 -2.70 16 6 C 0.56 9.67 7.73 -12.20 -0.09 9.58 16 7 O -0.54 -10.06 13.55 5.35 0.07 -9.98 16 8 N -0.68 -11.70 3.72 -61.16 -0.23 -11.93 16 9 C 0.13 2.24 4.43 -4.05 -0.02 2.23 16 10 C 0.12 2.21 3.20 -67.42 -0.22 2.00 16 11 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 12 C 0.06 0.92 6.29 37.31 0.23 1.15 16 13 O -0.39 -7.12 10.74 -35.23 -0.38 -7.50 16 14 C 0.04 0.63 6.99 37.31 0.26 0.89 16 15 C 0.14 3.04 5.42 -3.53 -0.02 3.02 16 16 N -0.59 -12.53 3.04 -164.29 -0.50 -13.03 16 17 C -0.26 -6.00 7.20 -15.06 -0.11 -6.11 16 18 H 0.07 1.71 5.72 -52.48 -0.30 1.41 16 19 C 0.01 0.30 4.94 -17.43 -0.09 0.21 16 20 N -0.89 -22.33 11.29 55.49 0.63 -21.71 16 21 Si 0.89 19.89 29.58 -169.99 -5.03 14.86 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.11 1.83 6.91 -81.99 -0.57 1.26 16 26 C -0.10 -1.40 8.95 36.01 0.32 -1.07 16 27 N -0.25 -4.25 11.42 33.81 0.39 -3.87 16 28 N -0.23 -3.76 11.04 33.57 0.37 -3.39 16 29 H 0.07 0.74 7.96 -51.93 -0.41 0.32 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.02 7.92 -51.93 -0.41 0.61 16 34 H 0.16 2.44 6.61 -52.49 -0.35 2.09 16 35 H 0.41 7.33 5.63 -40.82 -0.23 7.11 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.32 7.53 -51.93 -0.39 0.93 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.09 2.13 6.33 -51.93 -0.33 1.80 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.26 6.38 8.31 -40.82 -0.34 6.04 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 1.49 5.98 -51.93 -0.31 1.18 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -27.38 375.02 -7.57 -34.94 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.94 Total: 8.78 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -1.60 Total: 7.18 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.66 Total: -53.93 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.31 Total: -17.49 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.38 -7.57 -34.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051041590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.930 kcal (2) G-P(sol) polarization free energy of solvation -27.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds