Wall clock time and date at job start Tue Mar 31 2020 17:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50694 * 109.47507 * 2 1 4 4 C 1.38547 * 120.01847 * 125.25909 * 3 2 1 5 5 C 1.40078 * 117.81794 * 180.24289 * 4 3 2 6 6 C 1.48135 * 121.14466 * 179.78606 * 5 4 3 7 7 O 1.21515 * 119.99905 * 173.24155 * 6 5 4 8 8 N 1.34772 * 120.00364 * 353.23742 * 6 5 4 9 9 C 1.46498 * 120.00622 * 180.02562 * 8 6 5 10 10 C 1.52990 * 109.47687 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.68070 * 301.00312 * 10 9 8 12 12 C 1.53295 * 109.68308 * 180.48299 * 10 9 8 13 13 O 1.42970 * 109.22408 * 187.97722 * 12 10 9 14 14 C 1.42961 * 114.16472 * 62.57782 * 13 12 10 15 15 C 1.53292 * 109.22459 * 297.42108 * 14 13 12 16 16 N 1.47157 * 109.67919 * 61.52018 * 10 9 8 17 17 C 1.36931 * 120.98271 * 350.23403 * 16 10 9 18 18 H 1.08004 * 120.00072 * 28.80598 * 17 16 10 19 19 C 1.38814 * 120.00329 * 208.80813 * 17 16 10 20 20 N 1.31620 * 119.99495 * 16.12452 * 19 17 16 21 21 Si 1.86799 * 120.00273 * 196.12101 * 19 17 16 22 22 H 1.48500 * 109.46945 * 60.00119 * 21 19 17 23 23 H 1.48500 * 109.46719 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47260 * 300.00168 * 21 19 17 25 25 C 1.39765 * 117.70707 * 359.51230 * 5 4 3 26 26 C 1.50704 * 120.17269 * 180.23163 * 25 5 4 27 27 N 1.31890 * 119.65498 * 0.25111 * 25 5 4 28 28 N 1.28274 * 122.33171 * 0.02562 * 27 25 5 29 29 H 1.08992 * 109.47429 * 59.99811 * 1 2 3 30 30 H 1.09003 * 109.47630 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47359 * 299.99835 * 1 2 3 32 32 H 1.09000 * 109.46947 * 239.99509 * 2 1 3 33 33 H 1.09001 * 109.47230 * 120.00266 * 2 1 3 34 34 H 1.07999 * 121.09188 * 0.02562 * 4 3 2 35 35 H 0.96999 * 119.99883 * 359.97438 * 8 6 5 36 36 H 1.09006 * 109.46915 * 59.99561 * 9 8 6 37 37 H 1.08999 * 109.47159 * 300.00422 * 9 8 6 38 38 H 1.09000 * 109.51437 * 307.90033 * 12 10 9 39 39 H 1.08997 * 109.51481 * 68.00234 * 12 10 9 40 40 H 1.09005 * 109.51188 * 57.34699 * 14 13 12 41 41 H 1.08997 * 109.51272 * 177.49785 * 14 13 12 42 42 H 1.09005 * 109.68182 * 172.02462 * 15 14 13 43 43 H 1.08994 * 109.68390 * 292.57834 * 15 14 13 44 44 H 0.97003 * 119.99843 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.46926 * 83.30849 * 26 25 5 46 46 H 1.08998 * 109.47017 * 203.30921 * 26 25 5 47 47 H 1.08997 * 109.46575 * 323.30281 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9163 1.8433 0.9796 5 6 3.3496 3.1747 0.9387 6 6 4.2907 3.7056 1.9521 7 8 4.7488 4.8243 1.8287 8 7 4.6387 2.9480 3.0109 9 6 5.5689 3.4731 4.0135 10 6 5.7935 2.4213 5.1015 11 1 4.8419 2.1670 5.5682 12 6 6.7571 2.9706 6.1597 13 8 7.1060 1.9229 7.0678 14 6 7.7993 0.8296 6.4614 15 6 6.8891 0.1707 5.4188 16 7 6.3927 1.2151 4.5085 17 6 6.4860 1.0692 3.1502 18 1 6.5719 1.9407 2.5181 19 6 6.4702 -0.1988 2.5856 20 7 6.0539 -1.2284 3.2919 21 14 7.0395 -0.4438 0.8234 22 1 8.4546 -0.0120 0.6959 23 1 6.9261 -1.8796 0.4618 24 1 6.1911 0.3653 -0.0879 25 6 2.8681 3.9834 -0.0946 26 6 3.3023 5.4231 -0.1947 27 7 2.0316 3.4801 -0.9813 28 7 1.6343 2.2613 -0.9352 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8932 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.2573 1.1693 1.7514 35 1 4.2727 2.0551 3.1097 36 1 5.1499 4.3745 4.4609 37 1 6.5196 3.7123 3.5370 38 1 7.6575 3.3452 5.6728 39 1 6.2745 3.7811 6.7058 40 1 8.7035 1.1964 5.9756 41 1 8.0662 0.0992 7.2252 42 1 7.4546 -0.5703 4.8536 43 1 6.0481 -0.3109 5.9175 44 1 6.0431 -2.1146 2.8975 45 1 4.2631 5.4781 -0.7063 46 1 2.5586 5.9886 -0.7562 47 1 3.3988 5.8438 0.8062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051041590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:24 Heat of formation + Delta-G solvation = -16.559225 kcal Electronic energy + Delta-G solvation = -30263.065717 eV Core-core repulsion = 26253.612583 eV Total energy + Delta-G solvation = -4009.453134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.51038 -40.78222 -39.86691 -37.10822 -36.25668 -35.39690 -34.74625 -33.40246 -32.54479 -31.98060 -29.13367 -28.86629 -27.61861 -26.30045 -25.23961 -24.48742 -23.79259 -23.00433 -21.61800 -21.28747 -19.17952 -18.72141 -18.12112 -17.62221 -17.17990 -16.80592 -16.77519 -16.37891 -16.26590 -16.07217 -15.90580 -15.46468 -15.37885 -15.08265 -14.93638 -14.71385 -14.40278 -14.29864 -13.94532 -13.58540 -13.30971 -13.15753 -13.12526 -12.96094 -12.77031 -12.73863 -12.52279 -12.20893 -12.20298 -12.00953 -11.87811 -11.82715 -11.46364 -11.37025 -11.27867 -10.77961 -10.63436 -10.55640 -10.48419 -9.96137 -8.66626 -7.89671 -5.35708 -0.82612 -0.29684 1.35744 1.44079 1.46148 1.63603 2.00513 2.41181 2.42912 2.79938 3.03621 3.12728 3.24377 3.27911 3.42687 3.53104 3.66275 3.95625 4.01225 4.09869 4.22000 4.30977 4.33058 4.43563 4.48192 4.53070 4.58165 4.62997 4.64338 4.66872 4.69505 4.75573 4.89289 5.00203 5.01106 5.02664 5.10854 5.13134 5.24037 5.30296 5.36876 5.44984 5.61791 5.68125 6.29052 6.34861 6.46664 7.04876 7.08991 7.49114 7.75626 8.31435 9.14437 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.004586 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.799616 B = 6103.597763 C = 7256.146973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 C 0.060 3.940 4 C -0.072 4.072 5 C -0.137 4.137 6 C 0.557 3.443 7 O -0.553 6.553 8 N -0.683 5.683 9 C 0.140 3.860 10 C 0.125 3.875 11 H 0.041 0.959 12 C 0.057 3.943 13 O -0.397 6.397 14 C 0.046 3.954 15 C 0.148 3.852 16 N -0.603 5.603 17 C -0.245 4.245 18 H 0.069 0.931 19 C -0.021 4.021 20 N -0.915 5.915 21 Si 0.928 3.072 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.285 1.285 25 C 0.106 3.894 26 C -0.094 4.094 27 N -0.264 5.264 28 N -0.239 5.239 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.412 0.588 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.119 0.881 40 H 0.043 0.957 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.010 0.990 44 H 0.252 0.748 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 5.100 0.574 7.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.084 4.084 4 C -0.102 4.102 5 C -0.151 4.151 6 C 0.343 3.657 7 O -0.433 6.433 8 N -0.334 5.334 9 C 0.016 3.984 10 C 0.019 3.981 11 H 0.058 0.942 12 C -0.022 4.022 13 O -0.316 6.316 14 C -0.032 4.032 15 C 0.023 3.977 16 N -0.329 5.329 17 C -0.375 4.375 18 H 0.087 0.913 19 C -0.218 4.218 20 N -0.561 5.561 21 Si 0.759 3.241 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.212 1.212 25 C -0.039 4.039 26 C -0.152 4.152 27 N -0.105 5.105 28 N -0.081 5.081 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.182 0.818 35 H 0.250 0.750 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.137 0.863 40 H 0.061 0.939 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.028 0.972 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.497 5.971 -0.693 8.851 hybrid contribution 1.349 -1.411 -0.104 1.955 sum -5.148 4.560 -0.797 6.923 Atomic orbital electron populations 1.21659 0.92440 1.03318 1.02167 1.20625 0.98249 0.87241 1.04969 1.23229 0.94161 0.99658 0.91389 1.22892 0.93363 0.95064 0.98839 1.21191 1.00086 0.95431 0.98382 1.17872 0.81262 0.85030 0.81575 1.90685 1.55985 1.19637 1.77012 1.45935 1.45403 1.18960 1.23056 1.21264 0.92887 0.95955 0.88265 1.21572 0.95748 0.87699 0.93084 0.94168 1.22995 0.97869 0.89718 0.91575 1.87817 1.77247 1.31072 1.35454 1.23203 0.94138 0.89074 0.96767 1.21238 0.95073 0.91056 0.90346 1.44279 1.68914 1.17689 1.02015 1.19220 1.43566 0.91884 0.82791 0.91330 1.25337 1.00758 0.96875 0.98862 1.70088 1.49233 0.99422 1.37320 0.85972 0.78513 0.76469 0.83159 1.21770 1.21761 1.21174 1.23372 0.91573 0.99630 0.89292 1.20900 1.02040 0.86934 1.05342 1.72967 1.10126 1.05990 1.21457 1.72641 1.18113 0.97695 1.19688 0.92302 0.89807 0.92958 0.88772 0.88521 0.81775 0.74992 0.89181 0.92327 0.93167 0.86331 0.93879 0.87894 0.91745 0.97200 0.93861 0.89590 0.89195 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.77 71.98 0.70 -2.01 16 2 C -0.07 -1.66 6.35 29.84 0.19 -1.48 16 3 C 0.06 1.79 6.25 42.62 0.27 2.05 16 4 C -0.07 -2.22 9.29 22.79 0.21 -2.00 16 5 C -0.14 -4.47 5.92 -19.83 -0.12 -4.59 16 6 C 0.56 18.94 7.73 86.87 0.67 19.61 16 7 O -0.55 -19.97 13.55 -3.76 -0.05 -20.02 16 8 N -0.68 -22.75 3.72 -465.72 -1.73 -24.48 16 9 C 0.14 4.41 4.43 86.38 0.38 4.79 16 10 C 0.13 4.24 3.20 44.96 0.14 4.38 16 11 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 12 C 0.06 1.69 6.29 72.08 0.45 2.14 16 13 O -0.40 -13.45 10.74 -148.98 -1.60 -15.05 16 14 C 0.05 1.58 6.99 72.08 0.50 2.08 16 15 C 0.15 6.24 5.42 86.35 0.47 6.71 16 16 N -0.60 -25.15 3.04 -673.70 -2.05 -27.19 16 17 C -0.24 -11.12 7.20 84.03 0.60 -10.52 16 18 H 0.07 3.18 5.72 -2.91 -0.02 3.17 16 19 C -0.02 -0.99 4.94 84.86 0.42 -0.57 16 20 N -0.92 -46.18 11.29 21.65 0.24 -45.94 16 21 Si 0.93 41.01 29.58 68.60 2.03 43.04 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 25 C 0.11 3.39 6.91 42.92 0.30 3.69 16 26 C -0.09 -2.53 8.95 71.24 0.64 -1.90 16 27 N -0.26 -8.82 11.42 -46.94 -0.54 -9.35 16 28 N -0.24 -7.78 11.04 -47.69 -0.53 -8.31 16 29 H 0.06 1.24 7.96 -2.39 -0.02 1.22 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.10 2.08 7.92 -2.39 -0.02 2.07 16 34 H 0.16 4.92 6.61 -2.91 -0.02 4.90 16 35 H 0.41 14.31 5.63 -92.71 -0.52 13.79 16 36 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.06 2.04 7.53 -2.39 -0.02 2.02 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.10 3.05 8.14 -2.39 -0.02 3.04 16 42 H 0.06 3.05 6.33 -2.38 -0.02 3.04 16 43 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.25 12.63 8.31 -92.71 -0.77 11.86 16 45 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.10 2.76 5.98 -2.39 -0.01 2.75 16 Total: -1.00 -57.38 375.02 2.09 -55.29 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.47 Total: 29.62 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 5.83 Total: 22.40 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -4.60 Total: -115.28 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -1.65 Total: -35.07 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -57.38 2.09 -55.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051041590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.733 kcal (2) G-P(sol) polarization free energy of solvation -57.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds