Wall clock time and date at job start Tue Mar 31 2020 18:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46677 * 2 1 4 4 C 1.38040 * 126.29537 * 269.99766 * 3 2 1 5 5 C 1.47428 * 126.41467 * 0.02859 * 4 3 2 6 6 O 1.21614 * 119.99592 * 43.34887 * 5 4 3 7 7 N 1.34771 * 120.00351 * 223.34850 * 5 4 3 8 8 C 1.47127 * 121.05492 * 175.14977 * 7 5 4 9 9 C 1.53220 * 108.73203 * 232.19223 * 8 7 5 10 10 O 1.43103 * 109.35046 * 305.87601 * 9 8 7 11 11 C 1.42491 * 113.98567 * 59.94234 * 10 9 8 12 12 C 1.53446 * 113.80937 * 170.52594 * 11 10 9 13 13 N 1.47671 * 85.98186 * 268.76598 * 12 11 10 14 14 C 1.36940 * 134.45938 * 155.70036 * 13 12 11 15 15 H 1.07997 * 120.00171 * 176.71230 * 14 13 12 16 16 C 1.38817 * 119.99990 * 356.71678 * 14 13 12 17 17 N 1.31612 * 119.99977 * 7.25940 * 16 14 13 18 18 Si 1.86796 * 119.99926 * 187.26431 * 16 14 13 19 19 H 1.48501 * 109.47246 * 94.97386 * 18 16 14 20 20 H 1.48505 * 109.46890 * 214.97676 * 18 16 14 21 21 H 1.48502 * 109.47096 * 334.97530 * 18 16 14 22 22 C 1.47670 * 91.08046 * 335.70022 * 13 12 11 23 23 C 1.47335 * 121.05413 * 355.12979 * 7 5 4 24 24 C 1.41287 * 107.17154 * 179.76357 * 4 3 2 25 25 N 1.30449 * 108.02559 * 0.24638 * 24 4 3 26 26 N 1.34265 * 126.28803 * 90.18481 * 3 2 1 27 27 C 1.46497 * 125.75719 * 359.97438 * 26 3 2 28 28 H 1.09003 * 109.47287 * 59.99811 * 1 2 3 29 29 H 1.09007 * 109.46974 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47383 * 299.99851 * 1 2 3 31 31 H 1.09000 * 109.46674 * 240.00384 * 2 1 3 32 32 H 1.08995 * 109.47218 * 120.00525 * 2 1 3 33 33 H 1.09003 * 109.59248 * 112.41926 * 8 7 5 34 34 H 1.08994 * 109.59066 * 351.96756 * 8 7 5 35 35 H 1.08997 * 109.49302 * 65.84027 * 9 8 7 36 36 H 1.09002 * 109.49071 * 185.88432 * 9 8 7 37 37 H 1.09001 * 113.79166 * 23.03331 * 12 11 10 38 38 H 1.08999 * 113.79036 * 154.50204 * 12 11 10 39 39 H 0.96999 * 119.99881 * 180.02562 * 17 16 14 40 40 H 1.08999 * 113.79101 * 270.03547 * 22 13 12 41 41 H 1.09003 * 113.89609 * 138.57363 * 22 13 12 42 42 H 1.09000 * 109.74090 * 12.01215 * 23 7 5 43 43 H 1.09000 * 109.78328 * 251.32364 * 23 7 5 44 44 H 1.08001 * 125.98978 * 180.27767 * 24 4 3 45 45 H 1.08993 * 109.47286 * 270.27342 * 27 26 3 46 46 H 1.09004 * 109.46887 * 30.27140 * 27 26 3 47 47 H 1.09003 * 109.47495 * 150.26094 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3046 2.1913 -1.1126 5 6 2.1581 1.7783 -2.5202 6 8 1.1721 1.1598 -2.8729 7 7 3.1166 2.0862 -3.4162 8 6 3.0463 1.5960 -4.8016 9 6 4.3712 0.9089 -5.1483 10 8 5.4539 1.8075 -4.8871 11 6 5.5397 2.2320 -3.5296 12 6 6.8242 3.0051 -3.2024 13 7 7.3983 1.6932 -2.8419 14 6 8.6691 1.1865 -2.7808 15 1 8.8324 0.1793 -2.4271 16 6 9.7474 1.9676 -3.1735 17 7 9.5673 3.2377 -3.4680 18 14 11.4539 1.2160 -3.2843 19 1 11.7139 0.7818 -4.6804 20 1 12.4663 2.2256 -2.8831 21 1 11.5380 0.0432 -2.3773 22 6 6.0530 1.1468 -2.5736 23 6 4.2680 2.9247 -3.0394 24 6 2.7442 3.4517 -0.6497 25 7 2.7379 3.4274 0.6545 26 7 2.3004 2.1689 1.0822 27 6 2.1536 1.7418 2.4759 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.8814 2.4347 -5.4781 34 1 2.2285 0.8816 -4.8954 35 1 4.4868 0.0131 -4.5383 36 1 4.3729 0.6335 -6.2029 37 1 7.2932 3.4665 -4.0715 38 1 6.7235 3.6878 -2.3587 39 1 10.3207 3.7834 -3.7428 40 1 5.7230 1.2770 -1.5429 41 1 5.9073 0.1314 -2.9422 42 1 4.3037 3.0357 -1.9556 43 1 4.1791 3.9053 -3.5071 44 1 3.0341 4.2888 -1.2674 45 1 1.1469 1.9743 2.8230 46 1 2.3231 0.6673 2.5463 47 1 2.8817 2.2658 3.0951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053327349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:00 Heat of formation + Delta-G solvation = 72.984069 kcal Electronic energy + Delta-G solvation = -30460.904695 eV Core-core repulsion = 26455.334450 eV Total energy + Delta-G solvation = -4005.570245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67494 -40.08552 -38.47653 -36.04367 -34.84145 -34.15207 -33.17051 -32.19866 -30.30254 -29.36888 -27.97440 -27.06795 -25.97877 -25.09218 -24.18031 -23.23349 -22.44244 -21.40750 -20.36163 -19.06108 -18.59783 -17.43054 -16.79268 -16.37645 -16.13996 -15.94693 -15.46344 -15.14254 -14.79004 -14.56467 -14.44001 -14.37974 -14.02465 -13.67010 -13.55151 -13.31917 -13.21180 -13.01395 -12.90349 -12.51196 -12.47752 -12.27111 -11.82120 -11.78569 -11.38570 -11.28623 -11.14459 -10.95020 -10.83947 -10.78649 -10.71513 -10.13699 -9.99252 -9.63802 -9.63069 -9.44947 -9.27875 -8.77402 -8.65120 -8.19458 -6.87987 -5.75679 -3.05795 1.50735 2.19120 2.20932 2.95305 3.31035 3.41540 3.46182 3.48135 4.12802 4.26922 4.28626 4.45774 4.66077 4.76466 4.83598 4.93739 4.99210 5.06268 5.10561 5.12421 5.19909 5.24263 5.25078 5.35325 5.45918 5.49813 5.50705 5.59320 5.65778 5.70540 5.78783 5.88935 5.95811 6.04351 6.07873 6.29602 6.31382 6.46284 6.53318 6.58195 6.70543 6.96145 7.19530 7.45986 7.50716 7.52532 7.85050 8.00100 8.29940 9.05588 9.72548 10.58947 11.42327 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.003716 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.774504 B = 7532.741309 C = 8541.183669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 C 0.149 3.851 4 C -0.286 4.286 5 C 0.601 3.399 6 O -0.549 6.549 7 N -0.605 5.605 8 C 0.081 3.919 9 C 0.046 3.954 10 O -0.336 6.336 11 C 0.054 3.946 12 C 0.181 3.819 13 N -0.601 5.601 14 C -0.222 4.222 15 H 0.079 0.921 16 C -0.004 4.004 17 N -0.919 5.919 18 Si 0.911 3.089 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.104 3.896 23 C 0.086 3.914 24 C 0.082 3.918 25 N -0.294 5.294 26 N -0.362 5.362 27 C 0.097 3.903 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.254 0.746 40 H 0.036 0.964 41 H 0.044 0.956 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.192 0.808 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.826 -3.172 6.838 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C 0.017 3.983 4 C -0.301 4.301 5 C 0.390 3.610 6 O -0.428 6.428 7 N -0.337 5.337 8 C -0.041 4.041 9 C -0.032 4.032 10 O -0.254 6.254 11 C 0.012 3.988 12 C 0.056 3.944 13 N -0.327 5.327 14 C -0.350 4.350 15 H 0.097 0.903 16 C -0.201 4.201 17 N -0.566 5.566 18 Si 0.741 3.259 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.023 4.023 23 C -0.038 4.038 24 C -0.105 4.105 25 N -0.113 5.113 26 N -0.141 5.141 27 C -0.044 4.044 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.208 0.792 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.617 -2.793 7.719 20.346 hybrid contribution 0.801 -0.742 -0.439 1.177 sum -17.816 -3.535 7.280 19.568 Atomic orbital electron populations 1.21695 0.93164 1.02392 1.02849 1.20289 0.97302 0.88454 1.04056 1.21351 0.95803 0.94883 0.86264 1.19854 1.20085 0.96820 0.93332 1.17241 0.81766 0.78272 0.83723 1.90720 1.29598 1.42395 1.80062 1.48007 1.23342 1.51614 1.10778 1.22266 0.99595 1.00181 0.82072 1.22896 0.85900 0.92787 1.01623 1.88042 1.48654 1.63537 1.25135 1.23698 0.94158 0.97752 0.83143 1.22222 0.84496 0.89175 0.98540 1.45763 0.99964 1.08533 1.78400 1.18966 0.81057 0.97386 1.37549 0.90340 1.24744 0.97777 0.95741 1.01792 1.69802 1.30232 1.05029 1.51510 0.86125 0.83975 0.77950 0.77833 1.21512 1.21734 1.20716 1.22992 0.87177 0.96493 0.95608 1.22670 0.84851 0.94129 1.02154 1.24071 0.97114 0.97464 0.91881 1.77212 1.21967 0.98964 1.13162 1.48259 1.49929 1.09705 1.06206 1.21941 1.03669 1.01304 0.77503 0.90709 0.91715 0.93203 0.88730 0.90560 0.90791 0.88465 0.92948 0.88083 0.89776 0.93924 0.93594 0.94638 0.93798 0.88132 0.90510 0.79163 0.90426 0.89255 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 37.16 0.37 -0.91 16 2 C -0.06 -0.61 5.70 -27.88 -0.16 -0.77 16 3 C 0.15 1.84 6.26 -81.60 -0.51 1.33 16 4 C -0.29 -4.00 5.31 -105.07 -0.56 -4.56 16 5 C 0.60 9.08 7.28 -12.52 -0.09 8.99 16 6 O -0.55 -9.18 15.60 5.27 0.08 -9.10 16 7 N -0.60 -8.83 3.03 -173.71 -0.53 -9.36 16 8 C 0.08 1.09 6.58 -3.59 -0.02 1.07 16 9 C 0.05 0.68 6.88 37.27 0.26 0.94 16 10 O -0.34 -6.55 10.52 -35.23 -0.37 -6.92 16 11 C 0.05 1.04 1.21 -90.30 -0.11 0.93 16 12 C 0.18 4.23 6.91 -3.18 -0.02 4.21 16 13 N -0.60 -15.59 3.70 -180.28 -0.67 -16.26 16 14 C -0.22 -6.33 10.69 -15.06 -0.16 -6.49 16 15 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 16 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 17 N -0.92 -27.24 11.43 55.49 0.63 -26.60 16 18 Si 0.91 22.34 29.56 -169.99 -5.02 17.32 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.10 2.19 8.08 -3.17 -0.03 2.16 16 23 C 0.09 1.29 4.93 -3.64 -0.02 1.28 16 24 C 0.08 1.09 9.59 -16.98 -0.16 0.92 16 25 N -0.29 -4.05 12.50 30.86 0.39 -3.67 16 26 N -0.36 -4.23 3.98 -63.34 -0.25 -4.48 16 27 C 0.10 0.68 11.24 59.85 0.67 1.36 16 28 H 0.07 0.85 7.59 -51.93 -0.39 0.45 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 1.05 7.86 -51.93 -0.41 0.65 16 32 H 0.08 0.56 7.05 -51.93 -0.37 0.19 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.26 7.09 -51.93 -0.37 0.89 16 35 H 0.05 0.81 7.19 -51.93 -0.37 0.43 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 2.21 7.20 -51.93 -0.37 1.84 16 38 H 0.04 0.97 8.09 -51.93 -0.42 0.55 16 39 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.04 0.73 7.94 -51.93 -0.41 0.32 16 41 H 0.04 0.93 7.28 -51.93 -0.38 0.55 16 42 H 0.10 1.48 4.31 -51.93 -0.22 1.26 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.19 2.10 7.16 -52.49 -0.38 1.73 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.44 7.02 -51.93 -0.36 0.08 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -35.38 376.64 -7.67 -43.05 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.96 Total: 0.08 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -0.64 Total: 10.26 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.43 Total: -60.36 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.29 Total: -16.01 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.38 -7.67 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053327349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.031 kcal (2) G-P(sol) polarization free energy of solvation -35.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds