Wall clock time and date at job start Tue Mar 31 2020 18:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46677 * 2 1 4 4 C 1.38040 * 126.29537 * 269.99766 * 3 2 1 5 5 C 1.47428 * 126.41467 * 0.02859 * 4 3 2 6 6 O 1.21614 * 119.99592 * 43.34887 * 5 4 3 7 7 N 1.34771 * 120.00351 * 223.34850 * 5 4 3 8 8 C 1.47127 * 121.05492 * 175.14977 * 7 5 4 9 9 C 1.53220 * 108.73203 * 232.19223 * 8 7 5 10 10 O 1.43103 * 109.35046 * 305.87601 * 9 8 7 11 11 C 1.42491 * 113.98567 * 59.94234 * 10 9 8 12 12 C 1.53446 * 113.80937 * 170.52594 * 11 10 9 13 13 N 1.47671 * 85.98186 * 268.76598 * 12 11 10 14 14 C 1.36940 * 134.45938 * 155.70036 * 13 12 11 15 15 H 1.07997 * 120.00171 * 176.71230 * 14 13 12 16 16 C 1.38817 * 119.99990 * 356.71678 * 14 13 12 17 17 N 1.31612 * 119.99977 * 7.25940 * 16 14 13 18 18 Si 1.86796 * 119.99926 * 187.26431 * 16 14 13 19 19 H 1.48501 * 109.47246 * 94.97386 * 18 16 14 20 20 H 1.48505 * 109.46890 * 214.97676 * 18 16 14 21 21 H 1.48502 * 109.47096 * 334.97530 * 18 16 14 22 22 C 1.47670 * 91.08046 * 335.70022 * 13 12 11 23 23 C 1.47335 * 121.05413 * 355.12979 * 7 5 4 24 24 C 1.41287 * 107.17154 * 179.76357 * 4 3 2 25 25 N 1.30449 * 108.02559 * 0.24638 * 24 4 3 26 26 N 1.34265 * 126.28803 * 90.18481 * 3 2 1 27 27 C 1.46497 * 125.75719 * 359.97438 * 26 3 2 28 28 H 1.09003 * 109.47287 * 59.99811 * 1 2 3 29 29 H 1.09007 * 109.46974 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47383 * 299.99851 * 1 2 3 31 31 H 1.09000 * 109.46674 * 240.00384 * 2 1 3 32 32 H 1.08995 * 109.47218 * 120.00525 * 2 1 3 33 33 H 1.09003 * 109.59248 * 112.41926 * 8 7 5 34 34 H 1.08994 * 109.59066 * 351.96756 * 8 7 5 35 35 H 1.08997 * 109.49302 * 65.84027 * 9 8 7 36 36 H 1.09002 * 109.49071 * 185.88432 * 9 8 7 37 37 H 1.09001 * 113.79166 * 23.03331 * 12 11 10 38 38 H 1.08999 * 113.79036 * 154.50204 * 12 11 10 39 39 H 0.96999 * 119.99881 * 180.02562 * 17 16 14 40 40 H 1.08999 * 113.79101 * 270.03547 * 22 13 12 41 41 H 1.09003 * 113.89609 * 138.57363 * 22 13 12 42 42 H 1.09000 * 109.74090 * 12.01215 * 23 7 5 43 43 H 1.09000 * 109.78328 * 251.32364 * 23 7 5 44 44 H 1.08001 * 125.98978 * 180.27767 * 24 4 3 45 45 H 1.08993 * 109.47286 * 270.27342 * 27 26 3 46 46 H 1.09004 * 109.46887 * 30.27140 * 27 26 3 47 47 H 1.09003 * 109.47495 * 150.26094 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3046 2.1913 -1.1126 5 6 2.1581 1.7783 -2.5202 6 8 1.1721 1.1598 -2.8729 7 7 3.1166 2.0862 -3.4162 8 6 3.0463 1.5960 -4.8016 9 6 4.3712 0.9089 -5.1483 10 8 5.4539 1.8075 -4.8871 11 6 5.5397 2.2320 -3.5296 12 6 6.8242 3.0051 -3.2024 13 7 7.3983 1.6932 -2.8419 14 6 8.6691 1.1865 -2.7808 15 1 8.8324 0.1793 -2.4271 16 6 9.7474 1.9676 -3.1735 17 7 9.5673 3.2377 -3.4680 18 14 11.4539 1.2160 -3.2843 19 1 11.7139 0.7818 -4.6804 20 1 12.4663 2.2256 -2.8831 21 1 11.5380 0.0432 -2.3773 22 6 6.0530 1.1468 -2.5736 23 6 4.2680 2.9247 -3.0394 24 6 2.7442 3.4517 -0.6497 25 7 2.7379 3.4274 0.6545 26 7 2.3004 2.1689 1.0822 27 6 2.1536 1.7418 2.4759 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.8814 2.4347 -5.4781 34 1 2.2285 0.8816 -4.8954 35 1 4.4868 0.0131 -4.5383 36 1 4.3729 0.6335 -6.2029 37 1 7.2932 3.4665 -4.0715 38 1 6.7235 3.6878 -2.3587 39 1 10.3207 3.7834 -3.7428 40 1 5.7230 1.2770 -1.5429 41 1 5.9073 0.1314 -2.9422 42 1 4.3037 3.0357 -1.9556 43 1 4.1791 3.9053 -3.5071 44 1 3.0341 4.2888 -1.2674 45 1 1.1469 1.9743 2.8230 46 1 2.3231 0.6673 2.5463 47 1 2.8817 2.2658 3.0951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053327349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:59 Heat of formation + Delta-G solvation = 48.396436 kcal Electronic energy + Delta-G solvation = -30461.970895 eV Core-core repulsion = 26455.334450 eV Total energy + Delta-G solvation = -4006.636445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.64167 -41.44888 -39.81505 -37.61464 -35.95698 -35.13605 -34.27190 -33.93748 -31.65674 -30.45250 -29.37294 -27.96094 -27.60803 -26.84271 -25.06887 -24.42590 -23.93085 -22.68354 -21.34498 -20.48882 -19.76698 -18.81817 -18.42508 -17.67237 -17.16758 -17.06298 -16.85939 -16.58079 -16.16026 -15.78184 -15.70059 -15.41298 -15.31853 -14.95586 -14.84574 -14.77970 -14.23710 -14.09814 -13.81254 -13.73376 -13.50475 -13.38247 -13.25607 -12.93034 -12.86368 -12.77856 -12.55814 -12.44456 -12.12395 -12.03756 -11.91636 -11.85424 -11.68688 -11.38313 -10.98815 -10.84682 -10.73510 -10.37414 -9.68796 -9.42516 -8.92774 -7.91030 -5.22427 0.57339 1.16550 1.41513 1.45031 1.47999 1.55840 1.83539 2.20251 2.46552 2.71087 3.27556 3.32957 3.39297 3.46453 3.63029 3.76802 3.87941 3.90579 3.98173 4.19949 4.23819 4.28110 4.33692 4.40612 4.44294 4.50988 4.52527 4.63533 4.64908 4.65199 4.69998 4.74225 4.75517 4.90083 4.94569 4.98825 5.11979 5.17035 5.25308 5.29586 5.37828 5.46006 5.49521 5.90102 5.91621 6.32610 6.39598 6.53266 6.91267 7.15080 7.59713 8.53398 9.26454 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.003716 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.774504 B = 7532.741309 C = 8541.183669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 C 0.150 3.850 4 C -0.315 4.315 5 C 0.604 3.396 6 O -0.568 6.568 7 N -0.605 5.605 8 C 0.085 3.915 9 C 0.045 3.955 10 O -0.366 6.366 11 C 0.080 3.920 12 C 0.178 3.822 13 N -0.631 5.631 14 C -0.238 4.238 15 H 0.079 0.921 16 C -0.059 4.059 17 N -0.948 5.948 18 Si 0.977 3.023 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.269 1.269 22 C 0.108 3.892 23 C 0.100 3.900 24 C 0.077 3.923 25 N -0.320 5.320 26 N -0.358 5.358 27 C 0.084 3.916 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.044 0.956 36 H 0.127 0.873 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.250 0.750 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.205 0.795 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.082 -4.276 7.822 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C 0.017 3.983 4 C -0.330 4.330 5 C 0.394 3.606 6 O -0.448 6.448 7 N -0.338 5.338 8 C -0.037 4.037 9 C -0.032 4.032 10 O -0.284 6.284 11 C 0.038 3.962 12 C 0.052 3.948 13 N -0.357 5.357 14 C -0.366 4.366 15 H 0.096 0.904 16 C -0.253 4.253 17 N -0.596 5.596 18 Si 0.805 3.195 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.194 1.194 22 C -0.018 4.018 23 C -0.024 4.024 24 C -0.110 4.110 25 N -0.140 5.140 26 N -0.137 5.137 27 C -0.055 4.055 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.063 0.937 36 H 0.145 0.855 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.221 0.779 45 H 0.115 0.885 46 H 0.132 0.868 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.906 -3.911 8.727 22.084 hybrid contribution 1.122 -0.464 -0.698 1.401 sum -18.784 -4.375 8.029 20.891 Atomic orbital electron populations 1.21632 0.92372 1.03335 1.02057 1.20392 0.97842 0.87025 1.04749 1.21747 0.94729 0.95738 0.86110 1.19942 1.22118 0.97723 0.93217 1.17379 0.81391 0.77703 0.84128 1.90706 1.30313 1.43361 1.80451 1.48023 1.22923 1.51567 1.11259 1.22304 0.98779 1.00827 0.81753 1.23130 0.85265 0.91699 1.03115 1.87990 1.50872 1.64615 1.24928 1.23205 0.94250 0.95786 0.82971 1.22131 0.86609 0.88749 0.97294 1.46120 1.00673 1.10118 1.78823 1.19325 0.82673 0.97577 1.37071 0.90365 1.25561 1.01449 0.96227 1.02045 1.69980 1.30899 1.06146 1.52614 0.85099 0.79315 0.77393 0.77727 1.21491 1.21799 1.19364 1.23084 0.85065 0.97024 0.96610 1.22480 0.83043 0.94369 1.02522 1.24314 0.96881 0.97761 0.92005 1.77152 1.22919 1.00465 1.13427 1.48617 1.48689 1.08864 1.07577 1.22368 1.05027 1.02895 0.75247 0.93551 0.89911 0.91866 0.90273 0.87567 0.89266 0.87663 0.93715 0.85479 0.93365 0.93592 0.94098 0.93599 0.93921 0.87567 0.88561 0.77869 0.88467 0.86769 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.89 71.98 0.71 -1.42 16 2 C -0.06 -1.07 5.70 29.85 0.17 -0.90 16 3 C 0.15 3.46 6.26 42.14 0.26 3.72 16 4 C -0.32 -8.47 5.31 -20.15 -0.11 -8.58 16 5 C 0.60 17.58 7.28 86.66 0.63 18.21 16 6 O -0.57 -18.49 15.60 -4.07 -0.06 -18.55 16 7 N -0.61 -16.82 3.03 -821.75 -2.49 -19.31 16 8 C 0.09 2.14 6.58 86.33 0.57 2.71 16 9 C 0.04 1.27 6.88 72.06 0.50 1.76 16 10 O -0.37 -14.10 10.52 -148.98 -1.57 -15.66 16 11 C 0.08 3.03 1.21 -10.49 -0.01 3.01 16 12 C 0.18 8.49 6.91 86.30 0.60 9.08 16 13 N -0.63 -33.27 3.70 -729.12 -2.70 -35.97 16 14 C -0.24 -13.76 10.69 84.03 0.90 -12.87 16 15 H 0.08 4.37 7.84 -2.91 -0.02 4.34 16 16 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 17 N -0.95 -57.58 11.43 21.65 0.25 -57.33 16 18 Si 0.98 46.43 29.56 68.60 2.03 48.45 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 C 0.11 4.53 8.08 86.30 0.70 5.23 16 23 C 0.10 2.90 4.93 86.18 0.43 3.32 16 24 C 0.08 1.97 9.59 85.65 0.82 2.79 16 25 N -0.32 -8.46 12.50 -56.27 -0.70 -9.17 16 26 N -0.36 -7.70 3.98 -354.31 -1.41 -9.11 16 27 C 0.08 0.95 11.24 127.77 1.44 2.39 16 28 H 0.05 1.00 7.59 -2.39 -0.02 0.99 16 29 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 1.66 7.86 -2.39 -0.02 1.64 16 32 H 0.11 1.20 7.05 -2.39 -0.02 1.18 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 2.52 7.09 -2.39 -0.02 2.50 16 35 H 0.04 1.33 7.19 -2.39 -0.02 1.32 16 36 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.05 2.63 7.20 -2.39 -0.02 2.62 16 38 H 0.05 2.13 8.09 -2.39 -0.02 2.12 16 39 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.05 1.86 7.94 -2.39 -0.02 1.84 16 41 H 0.04 1.79 7.28 -2.39 -0.02 1.77 16 42 H 0.11 3.02 4.31 -2.39 -0.01 3.01 16 43 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.20 4.30 7.16 -2.91 -0.02 4.28 16 45 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.11 0.72 7.02 -2.38 -0.02 0.70 16 47 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.75 376.64 2.39 -75.36 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.98 Total: 15.79 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 8.06 Total: 25.50 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -7.05 Total: -130.89 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.63 Total: -34.21 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -77.75 2.39 -75.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053327349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.753 kcal (2) G-P(sol) polarization free energy of solvation -77.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds