Wall clock time and date at job start Tue Mar 31 2020 19:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47380 * 2 1 4 4 C 1.50702 * 109.47364 * 239.99602 * 2 1 3 5 5 C 1.35364 * 126.38728 * 214.71834 * 4 2 1 6 6 C 1.41502 * 105.50535 * 179.90002 * 5 4 2 7 7 C 1.47711 * 126.52025 * 180.10141 * 6 5 4 8 8 O 1.21571 * 120.00064 * 353.37925 * 7 6 5 9 9 N 1.34777 * 119.99828 * 173.38525 * 7 6 5 10 10 C 1.47127 * 121.04991 * 183.53517 * 9 7 6 11 11 C 1.53226 * 108.72422 * 127.77635 * 10 9 7 12 12 O 1.43106 * 109.34805 * 54.12477 * 11 10 9 13 13 C 1.42488 * 113.97629 * 300.04624 * 12 11 10 14 14 C 1.53460 * 113.76892 * 286.79069 * 13 12 11 15 15 N 1.47666 * 85.97253 * 268.71712 * 14 13 12 16 16 C 1.36941 * 134.45226 * 155.74165 * 15 14 13 17 17 H 1.08005 * 119.99355 * 185.12113 * 16 15 14 18 18 C 1.38808 * 120.00214 * 5.12702 * 16 15 14 19 19 N 1.31618 * 120.00005 * 354.98711 * 18 16 15 20 20 Si 1.86800 * 119.99759 * 174.99135 * 18 16 15 21 21 H 1.48496 * 109.47481 * 94.99868 * 20 18 16 22 22 H 1.48500 * 109.46901 * 214.99558 * 20 18 16 23 23 H 1.48498 * 109.47314 * 334.99600 * 20 18 16 24 24 C 1.47668 * 91.08888 * 335.70627 * 15 14 13 25 25 C 1.47342 * 121.05595 * 3.25787 * 9 7 6 26 26 N 1.31814 * 106.95910 * 0.36548 * 6 5 4 27 27 N 1.28465 * 110.07253 * 359.76828 * 26 6 5 28 28 H 0.97008 * 124.88019 * 179.97438 * 27 26 6 29 29 H 1.09004 * 109.46677 * 60.00598 * 1 2 3 30 30 H 1.08993 * 109.47243 * 300.00598 * 1 2 3 31 31 H 1.09000 * 109.47326 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46810 * 119.99941 * 2 1 3 33 33 H 1.08999 * 109.46854 * 59.99873 * 3 2 1 34 34 H 1.09004 * 109.46889 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46859 * 299.99271 * 3 2 1 36 36 H 1.08000 * 127.24499 * 0.02562 * 5 4 2 37 37 H 1.09008 * 109.59221 * 247.54188 * 10 9 7 38 38 H 1.08996 * 109.59773 * 8.00185 * 10 9 7 39 39 H 1.08992 * 109.49403 * 174.08678 * 11 10 9 40 40 H 1.08999 * 109.48908 * 294.13654 * 11 10 9 41 41 H 1.08994 * 113.79765 * 22.98401 * 14 13 12 42 42 H 1.09007 * 113.79307 * 154.45514 * 14 13 12 43 43 H 0.97006 * 119.99480 * 180.02562 * 19 18 16 44 44 H 1.08995 * 113.79479 * 270.02687 * 24 15 14 45 45 H 1.09005 * 113.89328 * 138.56875 * 24 15 14 46 46 H 1.08996 * 109.74142 * 348.03055 * 25 9 7 47 47 H 1.08995 * 109.74485 * 108.75561 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 3.1446 -1.4772 -1.3171 6 6 3.1932 -1.9228 -2.6593 7 6 4.2231 -2.7954 -3.2590 8 8 5.2075 -3.1044 -2.6161 9 7 4.0715 -3.2489 -4.5191 10 6 5.0434 -4.1805 -5.1124 11 6 4.2870 -5.3899 -5.6722 12 8 3.2683 -4.9379 -6.5698 13 6 2.3050 -4.0783 -5.9669 14 6 1.3275 -4.8037 -5.0325 15 7 0.4655 -4.9548 -6.2218 16 6 -0.5217 -5.8313 -6.5857 17 1 -0.9569 -5.7751 -7.5726 18 6 -0.9632 -6.7918 -5.6861 19 7 -0.3670 -6.9251 -4.5203 20 14 -2.4035 -7.8954 -6.1301 21 1 -1.8943 -9.1702 -6.6964 22 1 -3.2033 -8.1796 -4.9116 23 1 -3.2580 -7.2136 -7.1353 24 6 1.0939 -3.7814 -6.8612 25 6 2.9240 -2.8320 -5.3441 26 7 2.1477 -1.4064 -3.2739 27 7 1.4602 -0.6962 -2.4534 28 1 0.6471 -0.2181 -2.6799 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6769 1.9562 -0.8900 36 1 3.8459 -1.7032 -0.5275 37 1 5.5829 -3.6821 -5.9179 38 1 5.7466 -4.5110 -4.3481 39 1 4.9816 -6.0377 -6.2068 40 1 3.8302 -5.9443 -4.8524 41 1 1.7094 -5.7476 -4.6434 42 1 0.9018 -4.1642 -4.2592 43 1 -0.6754 -7.5966 -3.8918 44 1 0.5988 -2.8378 -6.6319 45 1 1.2909 -3.9111 -7.9254 46 1 2.1859 -2.3279 -4.7203 47 1 3.2622 -2.1594 -6.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053444348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:18 Heat of formation + Delta-G solvation = 70.317830 kcal Electronic energy + Delta-G solvation = -30161.792988 eV Core-core repulsion = 26156.107126 eV Total energy + Delta-G solvation = -4005.685862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.82488 -40.11671 -38.51075 -36.02891 -35.96749 -34.40437 -32.26600 -31.89983 -30.34086 -29.51000 -27.88029 -27.53443 -25.93789 -25.06521 -24.28953 -23.19629 -22.33178 -21.37707 -20.97790 -18.98562 -18.62524 -17.86161 -16.79051 -16.56876 -16.16527 -15.93570 -15.31564 -15.16103 -14.94432 -14.72320 -14.31911 -14.15749 -14.07003 -13.77006 -13.56102 -13.37940 -13.21515 -13.17356 -12.62163 -12.57209 -12.29619 -12.04064 -11.72177 -11.59092 -11.40765 -11.32241 -11.08370 -10.88496 -10.83931 -10.59742 -10.42110 -10.13038 -10.01732 -9.61596 -9.46644 -9.40904 -9.15937 -9.03026 -8.78154 -8.12098 -6.83292 -5.73152 -3.04452 1.59543 2.05982 2.70631 3.13012 3.41158 3.45915 3.48103 3.53682 4.18790 4.20170 4.37423 4.47873 4.48658 4.72248 4.99045 5.03819 5.11173 5.19209 5.23426 5.30054 5.35275 5.36650 5.41115 5.50460 5.54486 5.57993 5.64635 5.67358 5.70381 5.85377 5.86788 5.91712 6.00381 6.11150 6.21179 6.34461 6.39368 6.55048 6.57540 6.65422 7.00017 7.06585 7.23637 7.50348 7.55887 7.83785 7.93233 8.01836 8.31551 9.07477 9.74266 10.62374 11.44137 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010623 B = 0.004018 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.061267 B = 6967.800323 C = 8734.719151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.026 4.026 3 C -0.146 4.146 4 C 0.025 3.975 5 C -0.175 4.175 6 C -0.001 4.001 7 C 0.606 3.394 8 O -0.542 6.542 9 N -0.595 5.595 10 C 0.080 3.920 11 C 0.048 3.952 12 O -0.345 6.345 13 C 0.050 3.950 14 C 0.156 3.844 15 N -0.603 5.603 16 C -0.219 4.219 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.137 3.863 25 C 0.067 3.933 26 N -0.251 5.251 27 N -0.378 5.378 28 H 0.442 0.558 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.161 0.839 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.252 0.748 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.142 0.858 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.396 16.808 7.595 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.046 4.046 3 C -0.203 4.203 4 C -0.101 4.101 5 C -0.203 4.203 6 C -0.161 4.161 7 C 0.392 3.608 8 O -0.418 6.418 9 N -0.327 5.327 10 C -0.043 4.043 11 C -0.029 4.029 12 O -0.263 6.263 13 C 0.008 3.992 14 C 0.030 3.970 15 N -0.329 5.329 16 C -0.346 4.346 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.010 3.990 25 C -0.057 4.057 26 N -0.086 5.086 27 N -0.091 5.091 28 H 0.287 0.713 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.179 0.821 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.159 0.841 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.206 16.323 6.752 18.722 hybrid contribution -0.951 -0.422 0.631 1.217 sum 5.254 15.900 7.382 18.301 Atomic orbital electron populations 1.21916 0.94084 1.02891 1.02419 1.19775 0.95969 0.95702 0.93189 1.21871 1.01866 0.94457 1.02133 1.21339 0.96307 1.03538 0.88943 1.21433 0.99588 1.02422 0.96878 1.21842 0.96327 1.03981 0.93956 1.16951 0.84198 0.78993 0.80628 1.90749 1.30100 1.59428 1.61531 1.47965 1.26095 1.45698 1.12951 1.22328 0.91983 0.91174 0.98813 1.22877 0.90478 0.94683 0.94906 1.87905 1.37888 1.65779 1.34698 1.23590 0.88684 0.89546 0.97395 1.22594 0.86815 0.97758 0.89834 1.45746 1.42771 1.27805 1.16560 1.18998 1.10268 1.07592 0.97748 0.90142 1.24778 0.99741 0.99701 0.96165 1.69846 1.42173 1.36444 1.08286 0.86139 0.82233 0.80596 0.77056 1.21609 1.21726 1.20622 1.22473 0.87929 0.91749 0.96815 1.23172 0.89179 0.97584 0.95743 1.73315 1.05911 1.09251 1.20152 1.43454 1.22547 1.36767 1.06371 0.71290 0.92813 0.91292 0.91668 0.88341 0.91709 0.91885 0.92682 0.82139 0.90815 0.88341 0.88110 0.92187 0.91053 0.95088 0.93761 0.93374 0.92759 0.84113 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 8.95 37.16 0.33 -0.64 16 2 C -0.03 -0.19 3.32 -91.77 -0.30 -0.49 16 3 C -0.15 -0.86 9.18 37.16 0.34 -0.52 16 4 C 0.02 0.26 5.92 -82.21 -0.49 -0.23 16 5 C -0.18 -2.31 10.74 -39.36 -0.42 -2.73 16 6 C 0.00 -0.01 6.89 -82.76 -0.57 -0.58 16 7 C 0.61 10.67 7.72 -12.39 -0.10 10.57 16 8 O -0.54 -10.44 16.41 5.30 0.09 -10.35 16 9 N -0.59 -10.07 3.03 -173.86 -0.53 -10.60 16 10 C 0.08 1.21 6.59 -3.58 -0.02 1.19 16 11 C 0.05 0.82 6.88 37.27 0.26 1.07 16 12 O -0.34 -7.06 10.52 -35.23 -0.37 -7.43 16 13 C 0.05 1.00 1.21 -90.52 -0.11 0.89 16 14 C 0.16 3.84 6.58 -3.17 -0.02 3.82 16 15 N -0.60 -15.97 3.70 -180.34 -0.67 -16.64 16 16 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 17 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -28.00 11.47 55.49 0.64 -27.37 16 20 Si 0.91 22.54 29.56 -169.99 -5.02 17.52 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 C 0.14 2.90 8.33 -3.18 -0.03 2.87 16 25 C 0.07 1.14 5.55 -3.86 -0.02 1.12 16 26 N -0.25 -3.61 8.61 33.42 0.29 -3.32 16 27 N -0.38 -4.15 6.64 33.50 0.22 -3.92 16 28 H 0.44 3.48 8.14 -190.43 -1.55 1.93 16 29 H 0.05 0.29 7.43 -51.93 -0.39 -0.10 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 38 H 0.10 1.46 7.08 -51.93 -0.37 1.09 16 39 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.06 1.14 7.20 -51.93 -0.37 0.77 16 41 H 0.07 2.00 6.44 -51.93 -0.33 1.66 16 42 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.14 2.39 3.76 -89.31 -0.34 2.05 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -35.77 377.00 -9.46 -45.23 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.38 Total: 1.61 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -1.41 Total: 9.59 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.05 Total: -61.85 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.28 Total: -17.78 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.77 -9.46 -45.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053444348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.549 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds