Wall clock time and date at job start Tue Mar 31 2020 19:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47380 * 2 1 4 4 C 1.50702 * 109.47364 * 239.99602 * 2 1 3 5 5 C 1.35364 * 126.38728 * 214.71834 * 4 2 1 6 6 C 1.41502 * 105.50535 * 179.90002 * 5 4 2 7 7 C 1.47711 * 126.52025 * 180.10141 * 6 5 4 8 8 O 1.21571 * 120.00064 * 353.37925 * 7 6 5 9 9 N 1.34777 * 119.99828 * 173.38525 * 7 6 5 10 10 C 1.47127 * 121.04991 * 183.53517 * 9 7 6 11 11 C 1.53226 * 108.72422 * 127.77635 * 10 9 7 12 12 O 1.43106 * 109.34805 * 54.12477 * 11 10 9 13 13 C 1.42488 * 113.97629 * 300.04624 * 12 11 10 14 14 C 1.53460 * 113.76892 * 286.79069 * 13 12 11 15 15 N 1.47666 * 85.97253 * 268.71712 * 14 13 12 16 16 C 1.36941 * 134.45226 * 155.74165 * 15 14 13 17 17 H 1.08005 * 119.99355 * 185.12113 * 16 15 14 18 18 C 1.38808 * 120.00214 * 5.12702 * 16 15 14 19 19 N 1.31618 * 120.00005 * 354.98711 * 18 16 15 20 20 Si 1.86800 * 119.99759 * 174.99135 * 18 16 15 21 21 H 1.48496 * 109.47481 * 94.99868 * 20 18 16 22 22 H 1.48500 * 109.46901 * 214.99558 * 20 18 16 23 23 H 1.48498 * 109.47314 * 334.99600 * 20 18 16 24 24 C 1.47668 * 91.08888 * 335.70627 * 15 14 13 25 25 C 1.47342 * 121.05595 * 3.25787 * 9 7 6 26 26 N 1.31814 * 106.95910 * 0.36548 * 6 5 4 27 27 N 1.28465 * 110.07253 * 359.76828 * 26 6 5 28 28 H 0.97008 * 124.88019 * 179.97438 * 27 26 6 29 29 H 1.09004 * 109.46677 * 60.00598 * 1 2 3 30 30 H 1.08993 * 109.47243 * 300.00598 * 1 2 3 31 31 H 1.09000 * 109.47326 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46810 * 119.99941 * 2 1 3 33 33 H 1.08999 * 109.46854 * 59.99873 * 3 2 1 34 34 H 1.09004 * 109.46889 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46859 * 299.99271 * 3 2 1 36 36 H 1.08000 * 127.24499 * 0.02562 * 5 4 2 37 37 H 1.09008 * 109.59221 * 247.54188 * 10 9 7 38 38 H 1.08996 * 109.59773 * 8.00185 * 10 9 7 39 39 H 1.08992 * 109.49403 * 174.08678 * 11 10 9 40 40 H 1.08999 * 109.48908 * 294.13654 * 11 10 9 41 41 H 1.08994 * 113.79765 * 22.98401 * 14 13 12 42 42 H 1.09007 * 113.79307 * 154.45514 * 14 13 12 43 43 H 0.97006 * 119.99480 * 180.02562 * 19 18 16 44 44 H 1.08995 * 113.79479 * 270.02687 * 24 15 14 45 45 H 1.09005 * 113.89328 * 138.56875 * 24 15 14 46 46 H 1.08996 * 109.74142 * 348.03055 * 25 9 7 47 47 H 1.08995 * 109.74485 * 108.75561 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 3.1446 -1.4772 -1.3171 6 6 3.1932 -1.9228 -2.6593 7 6 4.2231 -2.7954 -3.2590 8 8 5.2075 -3.1044 -2.6161 9 7 4.0715 -3.2489 -4.5191 10 6 5.0434 -4.1805 -5.1124 11 6 4.2870 -5.3899 -5.6722 12 8 3.2683 -4.9379 -6.5698 13 6 2.3050 -4.0783 -5.9669 14 6 1.3275 -4.8037 -5.0325 15 7 0.4655 -4.9548 -6.2218 16 6 -0.5217 -5.8313 -6.5857 17 1 -0.9569 -5.7751 -7.5726 18 6 -0.9632 -6.7918 -5.6861 19 7 -0.3670 -6.9251 -4.5203 20 14 -2.4035 -7.8954 -6.1301 21 1 -1.8943 -9.1702 -6.6964 22 1 -3.2033 -8.1796 -4.9116 23 1 -3.2580 -7.2136 -7.1353 24 6 1.0939 -3.7814 -6.8612 25 6 2.9240 -2.8320 -5.3441 26 7 2.1477 -1.4064 -3.2739 27 7 1.4602 -0.6962 -2.4534 28 1 0.6471 -0.2181 -2.6799 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6769 1.9562 -0.8900 36 1 3.8459 -1.7032 -0.5275 37 1 5.5829 -3.6821 -5.9179 38 1 5.7466 -4.5110 -4.3481 39 1 4.9816 -6.0377 -6.2068 40 1 3.8302 -5.9443 -4.8524 41 1 1.7094 -5.7476 -4.6434 42 1 0.9018 -4.1642 -4.2592 43 1 -0.6754 -7.5966 -3.8918 44 1 0.5988 -2.8378 -6.6319 45 1 1.2909 -3.9111 -7.9254 46 1 2.1859 -2.3279 -4.7203 47 1 3.2622 -2.1594 -6.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053444348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:17 Heat of formation + Delta-G solvation = 45.146006 kcal Electronic energy + Delta-G solvation = -30162.884520 eV Core-core repulsion = 26156.107126 eV Total energy + Delta-G solvation = -4006.777394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.82968 -41.61590 -40.02020 -37.65828 -36.68661 -35.81092 -34.29173 -33.02184 -31.65076 -30.71368 -29.49528 -28.03706 -27.70168 -26.86302 -25.57455 -24.42395 -23.67224 -22.77272 -21.90360 -20.58041 -19.92152 -18.90329 -18.80547 -17.69796 -17.61491 -17.09736 -17.04932 -16.56480 -16.15483 -15.94067 -15.74955 -15.55081 -15.27413 -14.98022 -14.91728 -14.81448 -14.51698 -14.15762 -14.01124 -13.84702 -13.38148 -13.22041 -13.04225 -12.90995 -12.78806 -12.60788 -12.36081 -12.15229 -12.11497 -12.04827 -11.91419 -11.77098 -11.53306 -11.46993 -10.98535 -10.87640 -10.80897 -10.46286 -9.97747 -9.56183 -8.93442 -7.92160 -5.25488 0.43808 1.09914 1.42902 1.45150 1.54434 1.65618 2.02253 2.27726 2.45322 2.66358 3.17784 3.26898 3.36742 3.54718 3.66103 3.78115 3.81808 3.92323 4.09306 4.19711 4.24110 4.32476 4.41115 4.52607 4.57788 4.61543 4.66640 4.71049 4.77328 4.78092 4.82683 4.87980 4.93094 4.96618 5.03013 5.14583 5.15773 5.21138 5.25015 5.34758 5.39429 5.45213 5.47325 5.87905 6.07329 6.20621 6.32900 6.78227 6.87848 7.03383 7.58260 8.52520 9.24847 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010623 B = 0.004018 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.061267 B = 6967.800323 C = 8734.719151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.024 4.024 3 C -0.142 4.142 4 C 0.047 3.953 5 C -0.197 4.197 6 C -0.031 4.031 7 C 0.600 3.400 8 O -0.567 6.567 9 N -0.600 5.600 10 C 0.083 3.917 11 C 0.048 3.952 12 O -0.363 6.363 13 C 0.071 3.929 14 C 0.159 3.841 15 N -0.633 5.633 16 C -0.231 4.231 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.956 5.956 20 Si 0.979 3.021 21 H -0.289 1.289 22 H -0.294 1.294 23 H -0.264 1.264 24 C 0.138 3.862 25 C 0.077 3.923 26 N -0.266 5.266 27 N -0.365 5.365 28 H 0.457 0.543 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.165 0.835 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.018 0.982 43 H 0.246 0.754 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.145 0.855 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 18.945 7.137 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.044 4.044 3 C -0.199 4.199 4 C -0.081 4.081 5 C -0.225 4.225 6 C -0.190 4.190 7 C 0.388 3.612 8 O -0.445 6.445 9 N -0.331 5.331 10 C -0.039 4.039 11 C -0.029 4.029 12 O -0.282 6.282 13 C 0.029 3.971 14 C 0.033 3.967 15 N -0.360 5.360 16 C -0.359 4.359 17 H 0.105 0.895 18 C -0.261 4.261 19 N -0.605 5.605 20 Si 0.807 3.193 21 H -0.216 1.216 22 H -0.221 1.221 23 H -0.188 1.188 24 C 0.013 3.987 25 C -0.047 4.047 26 N -0.103 5.103 27 N -0.080 5.080 28 H 0.304 0.696 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.183 0.817 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.151 0.849 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.161 0.839 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.692 18.495 6.250 20.336 hybrid contribution -0.792 -1.053 0.798 1.541 sum 4.900 17.442 7.048 19.440 Atomic orbital electron populations 1.21934 0.93174 1.02277 1.03915 1.19933 0.96627 0.96270 0.91543 1.21851 1.01466 0.93393 1.03239 1.21793 0.94858 1.01858 0.89549 1.21645 1.01040 1.03506 0.96272 1.21776 0.96868 1.05148 0.95180 1.17269 0.84356 0.79030 0.80544 1.90715 1.31232 1.60601 1.61998 1.48072 1.26243 1.45846 1.12982 1.22389 0.91521 0.90391 0.99550 1.23047 0.90109 0.95715 0.94037 1.87863 1.38452 1.66170 1.35690 1.23265 0.88443 0.90038 0.95366 1.22409 0.88279 0.96063 0.89927 1.46111 1.42704 1.29432 1.17709 1.19442 1.10411 1.07987 0.98100 0.89486 1.25653 1.02547 1.01597 0.96275 1.70063 1.43726 1.37278 1.09434 0.85056 0.78952 0.78481 0.76833 1.21576 1.22076 1.18800 1.22701 0.87650 0.91048 0.97252 1.23086 0.89420 0.95897 0.96275 1.73129 1.05986 1.10058 1.21079 1.43510 1.22526 1.35701 1.06272 0.69566 0.91784 0.89463 0.93302 0.87575 0.89807 0.92532 0.92411 0.81699 0.88062 0.88021 0.84940 0.95397 0.95420 0.96475 0.94502 0.90448 0.91808 0.83861 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 8.95 71.98 0.64 -0.94 16 2 C -0.02 -0.29 3.32 -11.54 -0.04 -0.32 16 3 C -0.14 -1.30 9.18 71.98 0.66 -0.64 16 4 C 0.05 0.92 5.92 41.40 0.25 1.16 16 5 C -0.20 -5.15 10.74 22.41 0.24 -4.91 16 6 C -0.03 -0.98 6.89 42.46 0.29 -0.69 16 7 C 0.60 21.38 7.72 86.75 0.67 22.05 16 8 O -0.57 -22.27 16.41 -3.94 -0.06 -22.33 16 9 N -0.60 -20.09 3.03 -822.23 -2.49 -22.58 16 10 C 0.08 2.47 6.59 86.34 0.57 3.04 16 11 C 0.05 1.63 6.88 72.06 0.50 2.12 16 12 O -0.36 -14.73 10.52 -148.98 -1.57 -16.30 16 13 C 0.07 2.84 1.21 -10.64 -0.01 2.83 16 14 C 0.16 8.13 6.58 86.31 0.57 8.70 16 15 N -0.63 -33.93 3.70 -729.34 -2.70 -36.62 16 16 C -0.23 -13.43 10.70 84.03 0.90 -12.53 16 17 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 19 N -0.96 -60.27 11.47 21.65 0.25 -60.02 16 20 Si 0.98 46.97 29.56 68.60 2.03 49.00 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 24 C 0.14 5.71 8.33 86.30 0.72 6.43 16 25 C 0.08 2.53 5.55 86.04 0.48 3.00 16 26 N -0.27 -7.49 8.61 -48.17 -0.41 -7.90 16 27 N -0.36 -7.54 6.64 -47.93 -0.32 -7.86 16 28 H 0.46 6.34 8.14 -219.98 -1.79 4.55 16 29 H 0.06 0.52 7.43 -2.38 -0.02 0.50 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 38 H 0.10 2.97 7.08 -2.39 -0.02 2.96 16 39 H 0.13 3.57 8.14 -2.39 -0.02 3.55 16 40 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 41 H 0.03 1.64 6.44 -2.39 -0.02 1.62 16 42 H 0.02 0.92 7.92 -2.38 -0.02 0.91 16 43 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 44 H 0.08 2.78 8.09 -2.39 -0.02 2.76 16 45 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 46 H 0.14 4.74 3.76 -50.74 -0.19 4.55 16 47 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -80.00 377.00 0.64 -79.36 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.98 Total: 19.52 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 6.90 Total: 25.74 kcal Atomic # 7 Polarization: -129.31 SS G_CDS: -5.68 Total: -134.99 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -1.63 Total: -38.63 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -80.00 0.64 -79.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053444348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.505 kcal (2) G-P(sol) polarization free energy of solvation -79.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds