Wall clock time and date at job start Tue Mar 31 2020 18:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46654 * 2 1 4 4 C 1.35366 * 126.38886 * 84.98085 * 3 2 1 5 5 C 1.41500 * 105.50450 * 180.02562 * 4 3 2 6 6 C 1.47715 * 126.51335 * 179.97438 * 5 4 3 7 7 O 1.21568 * 120.00401 * 6.52224 * 6 5 4 8 8 N 1.34784 * 119.99543 * 186.51795 * 6 5 4 9 9 C 1.47120 * 121.05805 * 176.19739 * 8 6 5 10 10 C 1.53226 * 108.72557 * 232.31767 * 9 8 6 11 11 O 1.43122 * 109.35024 * 305.80206 * 10 9 8 12 12 C 1.42357 * 113.99316 * 59.78186 * 11 10 9 13 13 C 1.52926 * 114.29853 * 74.95170 * 12 11 10 14 14 N 1.47174 * 87.84035 * 88.27899 * 13 12 11 15 15 C 1.36939 * 135.99356 * 206.65010 * 14 13 12 16 16 H 1.07998 * 120.00587 * 5.16485 * 15 14 13 17 17 C 1.38820 * 119.99581 * 185.17092 * 15 14 13 18 18 N 1.31612 * 119.99787 * 5.14132 * 17 15 14 19 19 Si 1.86796 * 119.99714 * 185.14719 * 17 15 14 20 20 H 1.48504 * 109.46803 * 264.99426 * 19 17 15 21 21 H 1.48500 * 109.47250 * 24.99817 * 19 17 15 22 22 H 1.48506 * 109.47053 * 144.99857 * 19 17 15 23 23 C 1.47172 * 88.00671 * 26.90071 * 14 13 12 24 24 C 1.47356 * 121.06108 * 356.22076 * 8 6 5 25 25 N 1.31800 * 106.96400 * 0.24179 * 5 4 3 26 26 N 1.28468 * 110.07385 * 359.59042 * 25 5 4 27 27 C 1.46506 * 124.88412 * 180.20625 * 26 25 5 28 28 H 1.09004 * 109.46817 * 299.99541 * 1 2 3 29 29 H 1.08991 * 109.47401 * 59.99854 * 1 2 3 30 30 H 1.08997 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47155 * 240.00694 * 2 1 3 32 32 H 1.09000 * 109.47268 * 119.99586 * 2 1 3 33 33 H 1.08006 * 127.24375 * 0.04010 * 4 3 2 34 34 H 1.08998 * 109.59788 * 112.54566 * 9 8 6 35 35 H 1.09004 * 109.59952 * 352.08786 * 9 8 6 36 36 H 1.08999 * 109.49253 * 185.83985 * 10 9 8 37 37 H 1.09006 * 109.49273 * 65.76530 * 10 9 8 38 38 H 1.09001 * 113.49529 * 333.53543 * 13 12 11 39 39 H 1.09004 * 113.55383 * 203.02393 * 13 12 11 40 40 H 0.97008 * 119.99790 * 180.02562 * 18 17 15 41 41 H 1.08994 * 113.48935 * 87.83890 * 23 14 13 42 42 H 1.09001 * 113.49401 * 218.35381 * 23 14 13 43 43 H 1.09006 * 109.74809 * 12.08517 * 24 8 6 44 44 H 1.09001 * 109.74581 * 251.36320 * 24 8 6 45 45 H 1.09000 * 109.46979 * 270.24677 * 27 26 25 46 46 H 1.08992 * 109.47140 * 30.24273 * 27 26 25 47 47 H 1.08995 * 109.47159 * 150.24775 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2100 2.2098 1.0855 5 6 2.6916 3.4418 0.5830 6 6 3.0399 4.6385 1.3758 7 8 3.0352 4.5856 2.5903 8 7 3.3630 5.7891 0.7525 9 6 3.6330 7.0166 1.5171 10 6 2.7613 8.1460 0.9582 11 8 2.9812 8.2615 -0.4513 12 6 2.6705 7.0813 -1.1843 13 6 1.1731 6.8274 -1.3628 14 7 1.2367 7.6455 -2.5846 15 6 0.3608 8.4188 -3.2988 16 1 -0.6376 8.5902 -2.9245 17 6 0.7564 8.9824 -4.5042 18 7 1.9361 8.6924 -5.0105 19 14 -0.3857 10.1525 -5.4074 20 1 -1.1649 9.3987 -6.4223 21 1 -1.3163 10.7834 -4.4372 22 1 0.4161 11.2056 -6.0808 23 6 2.6526 7.2628 -2.7055 24 6 3.4566 5.8577 -0.7165 25 7 2.7647 3.3203 -0.7274 26 7 2.3883 2.1446 -1.0829 27 6 2.3466 1.6604 -2.4650 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0236 1.9529 2.1179 34 1 4.6850 7.2843 1.4194 35 1 3.3910 6.8538 2.5674 36 1 3.0255 9.0845 1.4455 37 1 1.7112 7.9217 1.1452 38 1 0.5608 7.2682 -0.5761 39 1 0.9281 5.7823 -1.5522 40 1 2.2126 9.0865 -5.8527 41 1 2.8063 6.3345 -3.2555 42 1 3.2931 8.0723 -3.0556 43 1 3.0296 4.9558 -1.1553 44 1 4.5005 5.9545 -1.0149 45 1 1.3708 1.8806 -2.8978 46 1 3.1227 2.1568 -3.0475 47 1 2.5152 0.5837 -2.4780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053551008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:06 Heat of formation + Delta-G solvation = 86.427402 kcal Electronic energy + Delta-G solvation = -30234.936355 eV Core-core repulsion = 26229.949056 eV Total energy + Delta-G solvation = -4004.987299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.83540 -40.18686 -38.60559 -36.11479 -34.85418 -34.27462 -33.47832 -32.21393 -30.26575 -29.44549 -28.25477 -27.20859 -25.94443 -24.87414 -24.15285 -23.58216 -22.50267 -21.51403 -20.67534 -18.99819 -18.79938 -17.20603 -16.74397 -16.62266 -16.41513 -16.07561 -15.36766 -15.16500 -14.84639 -14.69145 -14.39787 -14.34348 -14.04329 -13.68685 -13.57383 -13.36025 -13.30563 -13.05108 -12.82704 -12.65249 -12.49605 -12.22556 -12.02554 -11.90293 -11.45363 -11.38499 -11.07963 -10.92124 -10.81694 -10.69388 -10.32975 -10.16016 -10.07465 -9.62811 -9.50911 -9.20094 -9.04158 -9.02713 -8.78154 -8.18339 -6.85612 -5.75437 -3.05237 1.55753 2.01470 2.31337 3.06114 3.40767 3.46125 3.48602 3.48851 4.15665 4.19479 4.29579 4.47382 4.55901 4.67090 4.85171 4.96656 5.02415 5.11642 5.18018 5.21281 5.24235 5.28026 5.32549 5.38809 5.46219 5.50863 5.55150 5.59537 5.66374 5.81793 5.84930 5.88359 5.92911 6.02026 6.12342 6.35946 6.39195 6.53010 6.54997 6.59767 6.86785 6.99505 7.17417 7.46866 7.52153 7.83836 7.92336 8.00100 8.27754 9.05700 9.72430 10.65334 11.43646 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011762 B = 0.003861 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.960687 B = 7250.835283 C = 8887.522243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C 0.014 3.986 4 C -0.177 4.177 5 C -0.008 4.008 6 C 0.606 3.394 7 O -0.544 6.544 8 N -0.597 5.597 9 C 0.079 3.921 10 C 0.047 3.953 11 O -0.336 6.336 12 C 0.047 3.953 13 C 0.103 3.897 14 N -0.599 5.599 15 C -0.214 4.214 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.920 5.920 19 Si 0.912 3.088 20 H -0.290 1.290 21 H -0.280 1.280 22 H -0.289 1.289 23 C 0.183 3.817 24 C 0.070 3.930 25 N -0.253 5.253 26 N -0.280 5.280 27 C 0.081 3.919 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.160 0.840 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.254 0.746 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.144 0.856 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.646 -18.007 9.527 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.111 4.111 4 C -0.205 4.205 5 C -0.167 4.167 6 C 0.392 3.608 7 O -0.420 6.420 8 N -0.329 5.329 9 C -0.044 4.044 10 C -0.031 4.031 11 O -0.254 6.254 12 C 0.005 3.995 13 C -0.024 4.024 14 N -0.324 5.324 15 C -0.341 4.341 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.743 3.257 20 H -0.217 1.217 21 H -0.206 1.206 22 H -0.216 1.216 23 C 0.056 3.944 24 C -0.053 4.053 25 N -0.089 5.089 26 N -0.067 5.067 27 C -0.059 4.059 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.177 0.823 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.160 0.840 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.119 0.881 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.877 -17.090 8.697 19.391 hybrid contribution -0.899 0.031 0.070 0.902 sum 1.978 -17.059 8.767 19.282 Atomic orbital electron populations 1.21769 0.93955 1.02127 1.02842 1.20110 0.96508 0.88774 1.03725 1.21379 1.05848 0.96941 0.86897 1.21416 1.07282 0.92256 0.99543 1.21807 1.08593 0.96560 0.89778 1.16969 0.76525 0.81123 0.86135 1.90745 1.54508 1.83904 1.12866 1.48045 1.67593 1.09020 1.08277 1.22321 1.00427 0.84249 0.97358 1.22891 0.98620 0.98183 0.83406 1.87985 1.86583 1.34266 1.16516 1.23367 0.95347 0.84423 0.96406 1.22838 0.93827 0.94793 0.90951 1.45441 1.08114 1.51973 1.26903 1.18902 0.93859 1.21214 1.00157 0.90223 1.24770 0.97461 1.01008 0.97037 1.69825 1.19756 1.46745 1.20354 0.86099 0.79569 0.80499 0.79580 1.21723 1.20564 1.21556 1.21931 0.87953 0.98705 0.85773 1.23197 1.01609 1.02334 0.78208 1.73316 1.19255 1.01790 1.14497 1.45548 1.45132 1.08054 1.07932 1.22227 1.05465 1.00803 0.77425 0.91880 0.92565 0.91805 0.90727 0.89218 0.82253 0.90627 0.88415 0.88014 0.92928 0.94325 0.94602 0.93649 0.93766 0.90845 0.83978 0.91113 0.89354 0.88090 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.05 -0.34 6.21 -27.88 -0.17 -0.51 16 3 C 0.01 0.14 6.17 -82.21 -0.51 -0.36 16 4 C -0.18 -2.28 10.73 -39.36 -0.42 -2.70 16 5 C -0.01 -0.13 6.90 -82.77 -0.57 -0.70 16 6 C 0.61 10.34 7.72 -12.38 -0.10 10.24 16 7 O -0.54 -10.15 16.41 5.31 0.09 -10.06 16 8 N -0.60 -9.87 3.03 -173.65 -0.53 -10.40 16 9 C 0.08 1.17 6.58 -3.59 -0.02 1.15 16 10 C 0.05 0.75 6.90 37.27 0.26 1.01 16 11 O -0.34 -6.93 10.55 -35.23 -0.37 -7.31 16 12 C 0.05 0.95 1.29 -90.67 -0.12 0.84 16 13 C 0.10 2.29 7.90 -8.18 -0.06 2.22 16 14 N -0.60 -16.01 3.77 -184.53 -0.70 -16.71 16 15 C -0.21 -6.19 10.74 -15.06 -0.16 -6.35 16 16 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -27.55 11.73 55.49 0.65 -26.90 16 19 Si 0.91 22.48 29.56 -169.99 -5.02 17.45 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C 0.18 4.42 6.68 -8.03 -0.05 4.37 16 24 C 0.07 1.21 5.65 -3.69 -0.02 1.19 16 25 N -0.25 -3.70 8.35 33.42 0.28 -3.42 16 26 N -0.28 -3.19 3.70 -63.85 -0.24 -3.43 16 27 C 0.08 0.60 11.11 59.85 0.66 1.26 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.35 6.86 -51.93 -0.36 -0.01 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.16 1.85 8.06 -52.48 -0.42 1.42 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.10 1.38 7.08 -51.93 -0.37 1.01 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.05 0.88 7.30 -51.93 -0.38 0.50 16 38 H 0.04 0.87 7.36 -51.93 -0.38 0.48 16 39 H 0.04 0.79 7.93 -51.93 -0.41 0.38 16 40 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 42 H 0.07 1.98 7.50 -51.93 -0.39 1.59 16 43 H 0.14 2.43 3.75 -91.97 -0.34 2.09 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 0.39 6.88 -51.93 -0.36 0.03 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -36.06 378.62 -8.33 -44.39 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.18 Total: -0.12 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -1.02 Total: 10.79 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.53 Total: -60.86 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.28 Total: -17.36 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.06 -8.33 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053551008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.819 kcal (2) G-P(sol) polarization free energy of solvation -36.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds