Wall clock time and date at job start Tue Mar 31 2020 18:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.46654 * 2 1 4 4 C 1.35366 * 126.38886 * 84.98085 * 3 2 1 5 5 C 1.41500 * 105.50450 * 180.02562 * 4 3 2 6 6 C 1.47715 * 126.51335 * 179.97438 * 5 4 3 7 7 O 1.21568 * 120.00401 * 6.52224 * 6 5 4 8 8 N 1.34784 * 119.99543 * 186.51795 * 6 5 4 9 9 C 1.47120 * 121.05805 * 176.19739 * 8 6 5 10 10 C 1.53226 * 108.72557 * 232.31767 * 9 8 6 11 11 O 1.43122 * 109.35024 * 305.80206 * 10 9 8 12 12 C 1.42357 * 113.99316 * 59.78186 * 11 10 9 13 13 C 1.52926 * 114.29853 * 74.95170 * 12 11 10 14 14 N 1.47174 * 87.84035 * 88.27899 * 13 12 11 15 15 C 1.36939 * 135.99356 * 206.65010 * 14 13 12 16 16 H 1.07998 * 120.00587 * 5.16485 * 15 14 13 17 17 C 1.38820 * 119.99581 * 185.17092 * 15 14 13 18 18 N 1.31612 * 119.99787 * 5.14132 * 17 15 14 19 19 Si 1.86796 * 119.99714 * 185.14719 * 17 15 14 20 20 H 1.48504 * 109.46803 * 264.99426 * 19 17 15 21 21 H 1.48500 * 109.47250 * 24.99817 * 19 17 15 22 22 H 1.48506 * 109.47053 * 144.99857 * 19 17 15 23 23 C 1.47172 * 88.00671 * 26.90071 * 14 13 12 24 24 C 1.47356 * 121.06108 * 356.22076 * 8 6 5 25 25 N 1.31800 * 106.96400 * 0.24179 * 5 4 3 26 26 N 1.28468 * 110.07385 * 359.59042 * 25 5 4 27 27 C 1.46506 * 124.88412 * 180.20625 * 26 25 5 28 28 H 1.09004 * 109.46817 * 299.99541 * 1 2 3 29 29 H 1.08991 * 109.47401 * 59.99854 * 1 2 3 30 30 H 1.08997 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47155 * 240.00694 * 2 1 3 32 32 H 1.09000 * 109.47268 * 119.99586 * 2 1 3 33 33 H 1.08006 * 127.24375 * 0.04010 * 4 3 2 34 34 H 1.08998 * 109.59788 * 112.54566 * 9 8 6 35 35 H 1.09004 * 109.59952 * 352.08786 * 9 8 6 36 36 H 1.08999 * 109.49253 * 185.83985 * 10 9 8 37 37 H 1.09006 * 109.49273 * 65.76530 * 10 9 8 38 38 H 1.09001 * 113.49529 * 333.53543 * 13 12 11 39 39 H 1.09004 * 113.55383 * 203.02393 * 13 12 11 40 40 H 0.97008 * 119.99790 * 180.02562 * 18 17 15 41 41 H 1.08994 * 113.48935 * 87.83890 * 23 14 13 42 42 H 1.09001 * 113.49401 * 218.35381 * 23 14 13 43 43 H 1.09006 * 109.74809 * 12.08517 * 24 8 6 44 44 H 1.09001 * 109.74581 * 251.36320 * 24 8 6 45 45 H 1.09000 * 109.46979 * 270.24677 * 27 26 25 46 46 H 1.08992 * 109.47140 * 30.24273 * 27 26 25 47 47 H 1.08995 * 109.47159 * 150.24775 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2100 2.2098 1.0855 5 6 2.6916 3.4418 0.5830 6 6 3.0399 4.6385 1.3758 7 8 3.0352 4.5856 2.5903 8 7 3.3630 5.7891 0.7525 9 6 3.6330 7.0166 1.5171 10 6 2.7613 8.1460 0.9582 11 8 2.9812 8.2615 -0.4513 12 6 2.6705 7.0813 -1.1843 13 6 1.1731 6.8274 -1.3628 14 7 1.2367 7.6455 -2.5846 15 6 0.3608 8.4188 -3.2988 16 1 -0.6376 8.5902 -2.9245 17 6 0.7564 8.9824 -4.5042 18 7 1.9361 8.6924 -5.0105 19 14 -0.3857 10.1525 -5.4074 20 1 -1.1649 9.3987 -6.4223 21 1 -1.3163 10.7834 -4.4372 22 1 0.4161 11.2056 -6.0808 23 6 2.6526 7.2628 -2.7055 24 6 3.4566 5.8577 -0.7165 25 7 2.7647 3.3203 -0.7274 26 7 2.3883 2.1446 -1.0829 27 6 2.3466 1.6604 -2.4650 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0236 1.9529 2.1179 34 1 4.6850 7.2843 1.4194 35 1 3.3910 6.8538 2.5674 36 1 3.0255 9.0845 1.4455 37 1 1.7112 7.9217 1.1452 38 1 0.5608 7.2682 -0.5761 39 1 0.9281 5.7823 -1.5522 40 1 2.2126 9.0865 -5.8527 41 1 2.8063 6.3345 -3.2555 42 1 3.2931 8.0723 -3.0556 43 1 3.0296 4.9558 -1.1553 44 1 4.5005 5.9545 -1.0149 45 1 1.3708 1.8806 -2.8978 46 1 3.1227 2.1568 -3.0475 47 1 2.5152 0.5837 -2.4780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053551008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:05 Heat of formation + Delta-G solvation = 61.671709 kcal Electronic energy + Delta-G solvation = -30236.009842 eV Core-core repulsion = 26229.949056 eV Total energy + Delta-G solvation = -4006.060786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.77881 -41.68981 -40.09279 -37.77469 -36.00568 -35.21045 -34.37338 -34.24179 -31.71584 -30.34784 -29.75359 -28.30943 -27.62702 -26.70522 -25.13142 -24.44218 -24.19459 -22.86796 -21.68869 -20.50384 -20.07728 -18.81860 -18.15959 -17.78064 -17.55663 -17.24789 -17.02797 -16.72039 -16.29884 -15.92012 -15.65089 -15.45106 -15.30604 -15.10474 -14.97902 -14.76207 -14.23297 -14.13602 -14.01235 -13.73129 -13.42011 -13.41042 -13.27325 -13.14024 -12.90831 -12.77463 -12.61652 -12.44111 -12.18821 -11.98021 -11.91852 -11.76047 -11.57438 -11.47880 -10.99694 -10.82853 -10.74479 -10.15560 -9.93870 -9.58625 -8.96702 -7.94287 -5.26533 0.45316 1.11009 1.44043 1.46762 1.47565 1.56076 1.86331 2.27796 2.44829 2.65562 3.17185 3.28071 3.32914 3.54246 3.60345 3.74227 3.82939 3.94656 4.11102 4.18504 4.29367 4.32745 4.41107 4.45664 4.48416 4.53170 4.55290 4.61762 4.66598 4.68907 4.71418 4.76329 4.83222 4.86162 4.90675 5.08256 5.12271 5.14964 5.16901 5.25083 5.38805 5.41798 5.51434 5.85505 5.93632 6.16768 6.34709 6.79662 6.86870 7.06567 7.55035 8.54621 9.24596 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011762 B = 0.003861 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.960687 B = 7250.835283 C = 8887.522243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C 0.031 3.969 4 C -0.197 4.197 5 C -0.039 4.039 6 C 0.603 3.397 7 O -0.566 6.566 8 N -0.600 5.600 9 C 0.081 3.919 10 C 0.046 3.954 11 O -0.364 6.364 12 C 0.072 3.928 13 C 0.108 3.892 14 N -0.628 5.628 15 C -0.235 4.235 16 H 0.080 0.920 17 C -0.060 4.060 18 N -0.949 5.949 19 Si 0.981 3.019 20 H -0.282 1.282 21 H -0.271 1.271 22 H -0.291 1.291 23 C 0.183 3.817 24 C 0.083 3.917 25 N -0.278 5.278 26 N -0.276 5.276 27 C 0.069 3.931 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.165 0.835 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.043 0.957 38 H 0.035 0.965 39 H 0.044 0.956 40 H 0.251 0.749 41 H 0.048 0.952 42 H 0.038 0.962 43 H 0.149 0.851 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -19.839 9.733 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.094 4.094 4 C -0.225 4.225 5 C -0.196 4.196 6 C 0.392 3.608 7 O -0.444 6.444 8 N -0.332 5.332 9 C -0.041 4.041 10 C -0.031 4.031 11 O -0.283 6.283 12 C 0.030 3.970 13 C -0.018 4.018 14 N -0.354 5.354 15 C -0.362 4.362 16 H 0.098 0.902 17 C -0.253 4.253 18 N -0.597 5.597 19 Si 0.809 3.191 20 H -0.209 1.209 21 H -0.196 1.196 22 H -0.217 1.217 23 C 0.057 3.943 24 C -0.041 4.041 25 N -0.115 5.115 26 N -0.063 5.063 27 C -0.070 4.070 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.183 0.817 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.150 0.850 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.165 0.835 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.118 0.882 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.481 -18.933 8.927 21.079 hybrid contribution -0.802 0.521 0.023 0.957 sum 1.678 -18.412 8.950 20.541 Atomic orbital electron populations 1.21759 0.93791 1.03219 1.01782 1.20307 0.96415 0.86236 1.05839 1.21941 1.03612 0.98161 0.85720 1.21637 1.08157 0.91971 1.00710 1.21749 1.10573 0.96897 0.90388 1.17236 0.75898 0.81626 0.86075 1.90714 1.55571 1.84405 1.13741 1.48092 1.67594 1.09614 1.07885 1.22400 1.01074 0.83142 0.97484 1.23140 0.98496 1.00355 0.81118 1.87930 1.86654 1.34684 1.18995 1.22956 0.94275 0.85634 0.94145 1.22888 0.95383 0.94376 0.89167 1.45748 1.08939 1.52683 1.27985 1.19257 0.94381 1.21880 1.00723 0.90239 1.25626 0.99112 1.02706 0.97867 1.70000 1.21415 1.47772 1.20547 0.85033 0.77660 0.78145 0.78279 1.20876 1.19575 1.21725 1.21858 0.86389 0.97363 0.88730 1.23023 1.01524 1.00709 0.78876 1.73118 1.20494 1.03655 1.14185 1.45933 1.43674 1.07201 1.09538 1.22629 1.05791 1.03115 0.75426 0.93224 0.93393 0.89639 0.88032 0.87688 0.81735 0.88991 0.87483 0.84982 0.93864 0.94704 0.93812 0.93994 0.93490 0.94359 0.83478 0.90158 0.88873 0.88182 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 71.98 0.71 -0.77 16 2 C -0.05 -0.47 6.21 29.85 0.19 -0.29 16 3 C 0.03 0.59 6.17 41.40 0.26 0.84 16 4 C -0.20 -4.92 10.73 22.41 0.24 -4.67 16 5 C -0.04 -1.18 6.90 42.46 0.29 -0.89 16 6 C 0.60 20.53 7.72 86.75 0.67 21.20 16 7 O -0.57 -21.09 16.41 -3.93 -0.06 -21.15 16 8 N -0.60 -19.57 3.03 -821.57 -2.49 -22.06 16 9 C 0.08 2.31 6.58 86.34 0.57 2.88 16 10 C 0.05 1.43 6.90 72.06 0.50 1.93 16 11 O -0.36 -15.09 10.55 -148.98 -1.57 -16.66 16 12 C 0.07 2.97 1.29 -10.82 -0.01 2.96 16 13 C 0.11 4.88 7.90 83.33 0.66 5.53 16 14 N -0.63 -34.33 3.77 -738.60 -2.79 -37.12 16 15 C -0.23 -13.82 10.74 84.04 0.90 -12.92 16 16 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 17 C -0.06 -3.48 5.50 84.87 0.47 -3.01 16 18 N -0.95 -58.11 11.73 21.65 0.25 -57.86 16 19 Si 0.98 46.62 29.56 68.60 2.03 48.64 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 23 C 0.18 9.12 6.68 83.43 0.56 9.67 16 24 C 0.08 2.83 5.65 86.14 0.49 3.32 16 25 N -0.28 -7.94 8.35 -48.18 -0.40 -8.35 16 26 N -0.28 -5.85 3.70 -355.93 -1.32 -7.16 16 27 C 0.07 0.85 11.11 127.77 1.42 2.27 16 28 H 0.05 0.63 8.14 -2.38 -0.02 0.62 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.47 6.86 -2.39 -0.02 0.45 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.11 2.89 7.08 -2.38 -0.02 2.87 16 36 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.04 1.43 7.30 -2.38 -0.02 1.41 16 38 H 0.03 1.58 7.36 -2.39 -0.02 1.57 16 39 H 0.04 1.93 7.93 -2.38 -0.02 1.91 16 40 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 41 H 0.05 2.29 8.09 -2.39 -0.02 2.27 16 42 H 0.04 2.15 7.50 -2.39 -0.02 2.13 16 43 H 0.15 5.02 3.75 -54.19 -0.20 4.82 16 44 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.13 0.57 6.88 -2.39 -0.02 0.56 16 Total: -1.00 -79.81 378.62 2.34 -77.48 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.79 Total: 16.19 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 7.90 Total: 28.05 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -6.74 Total: -132.55 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.64 Total: -37.81 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.64 kcal Total: -79.81 2.34 -77.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053551008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.150 kcal (2) G-P(sol) polarization free energy of solvation -79.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds