Wall clock time and date at job start Tue Mar 31 2020 18:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47010 * 2 1 4 4 C 1.35367 * 126.38340 * 85.00573 * 3 2 1 5 5 C 1.41507 * 105.50516 * 179.97438 * 4 3 2 6 6 C 1.47706 * 126.52033 * 179.97438 * 5 4 3 7 7 O 1.21576 * 119.99875 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99937 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99802 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47051 * 180.02562 * 9 8 6 11 11 H 1.08996 * 110.64016 * 307.87563 * 10 9 8 12 12 C 1.55056 * 110.58326 * 185.00046 * 10 9 8 13 13 C 1.55023 * 102.12990 * 204.93500 * 12 10 9 14 14 C 1.53325 * 103.78634 * 20.86591 * 13 12 10 15 15 C 1.52646 * 115.56358 * 133.64561 * 14 13 12 16 16 N 1.47223 * 87.78158 * 90.04343 * 15 14 13 17 17 C 1.36942 * 135.96799 * 206.41017 * 16 15 14 18 18 H 1.07998 * 119.99662 * 6.48846 * 17 16 15 19 19 C 1.38810 * 119.99956 * 186.48255 * 17 16 15 20 20 N 1.31624 * 120.00077 * 6.42088 * 19 17 16 21 21 Si 1.86795 * 119.99801 * 186.41661 * 19 17 16 22 22 H 1.48495 * 109.47273 * 265.02243 * 21 19 17 23 23 H 1.48505 * 109.47005 * 145.02269 * 21 19 17 24 24 H 1.48507 * 109.47115 * 25.02459 * 21 19 17 25 25 C 1.47220 * 88.06553 * 26.66837 * 16 15 14 26 26 O 1.42839 * 108.32946 * 1.60036 * 14 13 12 27 27 N 1.31811 * 106.96066 * 0.24221 * 5 4 3 28 28 N 1.28468 * 110.07525 * 359.58995 * 27 5 4 29 29 H 0.96997 * 124.88771 * 180.13148 * 28 27 5 30 30 H 1.09004 * 109.46652 * 299.99436 * 1 2 3 31 31 H 1.08995 * 109.47348 * 59.99867 * 1 2 3 32 32 H 1.09001 * 109.46758 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47146 * 240.00400 * 2 1 3 34 34 H 1.08995 * 109.47348 * 120.00133 * 2 1 3 35 35 H 1.07998 * 127.24954 * 359.97438 * 4 3 2 36 36 H 0.96995 * 120.00214 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.46906 * 60.00262 * 9 8 6 38 38 H 1.09003 * 109.47144 * 300.00390 * 9 8 6 39 39 H 1.09004 * 110.87195 * 86.77921 * 12 10 9 40 40 H 1.09003 * 110.87272 * 323.09601 * 12 10 9 41 41 H 1.09002 * 110.56851 * 262.28773 * 13 12 10 42 42 H 1.08999 * 110.69205 * 139.49939 * 13 12 10 43 43 H 1.08996 * 113.50317 * 335.31791 * 15 14 13 44 44 H 1.09000 * 113.55597 * 204.78002 * 15 14 13 45 45 H 0.97001 * 119.99419 * 179.97438 * 20 19 17 46 46 H 1.09003 * 113.50121 * 88.06251 * 25 16 15 47 47 H 1.09000 * 113.49959 * 218.60064 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2105 2.2095 1.0857 5 6 2.6932 3.4412 0.5833 6 6 3.0423 4.6376 1.3761 7 8 2.9230 4.6212 2.5859 8 7 3.4932 5.7473 0.7583 9 6 3.8390 6.9341 1.5446 10 6 4.3194 8.0444 0.6079 11 1 5.1089 7.6784 -0.0485 12 6 4.8108 9.2694 1.4214 13 6 4.6214 10.4292 0.4104 14 6 3.5966 9.8792 -0.5887 15 6 2.4524 10.8243 -0.9462 16 7 3.2896 11.3295 -2.0468 17 6 3.3909 12.5007 -2.7492 18 1 2.8120 13.3617 -2.4495 19 6 4.2376 12.5811 -3.8462 20 7 4.8461 11.5010 -4.2885 21 14 4.5132 14.2221 -4.6949 22 1 3.5857 14.3450 -5.8480 23 1 5.9156 14.3007 -5.1771 24 1 4.2576 15.3254 -3.7342 25 6 3.9659 10.0219 -2.0661 26 8 3.2165 8.5686 -0.1667 27 7 2.7664 3.3198 -0.7271 28 7 2.3892 2.1444 -1.0829 29 1 2.3604 1.8242 -1.9980 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0237 1.9528 2.1179 36 1 3.5880 5.7605 -0.2069 37 1 4.6320 6.6845 2.2495 38 1 2.9605 7.2759 2.0921 39 1 5.8606 9.1591 1.6936 40 1 4.1930 9.4210 2.3066 41 1 5.5617 10.6568 -0.0918 42 1 4.2311 11.3158 0.9100 43 1 2.2484 11.5699 -0.1779 44 1 1.5528 10.3105 -1.2850 45 1 5.4375 11.5573 -5.0553 46 1 3.4776 9.2894 -2.7089 47 1 5.0393 10.0903 -2.2430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053574325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:22 Heat of formation + Delta-G solvation = 45.105106 kcal Electronic energy + Delta-G solvation = -28177.392413 eV Core-core repulsion = 24170.613245 eV Total energy + Delta-G solvation = -4006.779168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.93991 -40.00493 -39.19569 -36.61775 -34.78461 -34.42050 -32.24713 -32.05585 -31.73147 -29.83418 -29.05644 -27.04872 -24.82771 -24.64677 -24.18724 -23.03041 -21.77254 -21.35373 -21.17774 -19.92673 -18.78961 -17.97375 -17.09962 -16.81139 -16.39547 -16.09540 -15.68184 -15.12877 -14.91429 -14.77626 -14.66325 -14.30988 -14.05446 -13.81833 -13.73748 -13.55521 -13.18472 -12.95376 -12.78092 -12.37884 -12.14323 -12.07493 -11.66331 -11.65033 -11.36454 -11.18998 -11.03813 -10.94895 -10.85982 -10.65307 -10.56504 -10.24705 -10.11457 -10.07007 -9.65457 -9.50526 -9.25165 -9.04643 -8.79519 -8.69714 -6.91152 -5.80710 -3.11903 1.40178 1.83889 2.55422 3.13777 3.35817 3.37698 3.42607 3.45072 4.03402 4.17781 4.25989 4.46706 4.49064 4.76838 4.80479 4.91671 4.99650 5.09122 5.16247 5.22634 5.25756 5.34084 5.37439 5.38510 5.40595 5.49622 5.61488 5.66704 5.70169 5.72306 5.77518 5.99106 6.09101 6.12222 6.38048 6.42623 6.44818 6.50730 6.64140 6.68742 6.69350 6.99970 7.16665 7.40170 7.47577 7.65153 7.69331 7.93479 8.17398 9.00762 9.66998 10.61373 11.38108 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.002170 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.703302 B =12897.822996 C =13984.725348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.054 4.054 3 C 0.014 3.986 4 C -0.175 4.175 5 C -0.010 4.010 6 C 0.603 3.397 7 O -0.539 6.539 8 N -0.709 5.709 9 C 0.129 3.871 10 C 0.063 3.937 11 H 0.076 0.924 12 C -0.146 4.146 13 C -0.109 4.109 14 C 0.046 3.954 15 C 0.126 3.874 16 N -0.602 5.602 17 C -0.216 4.216 18 H 0.083 0.917 19 C -0.008 4.008 20 N -0.918 5.918 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.156 3.844 26 O -0.357 6.357 27 N -0.253 5.253 28 N -0.379 5.379 29 H 0.445 0.555 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.162 0.838 36 H 0.412 0.588 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.039 0.961 45 H 0.254 0.746 46 H 0.035 0.965 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 -22.551 10.465 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.112 4.112 4 C -0.203 4.203 5 C -0.171 4.171 6 C 0.387 3.613 7 O -0.414 6.414 8 N -0.360 5.360 9 C 0.005 3.995 10 C 0.005 3.995 11 H 0.094 0.906 12 C -0.184 4.184 13 C -0.147 4.147 14 C 0.006 3.994 15 C 0.000 4.000 16 N -0.330 5.330 17 C -0.343 4.343 18 H 0.101 0.899 19 C -0.205 4.205 20 N -0.565 5.565 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.029 3.971 26 O -0.275 6.275 27 N -0.089 5.089 28 N -0.093 5.093 29 H 0.289 0.711 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.179 0.821 36 H 0.248 0.752 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.947 -21.789 10.127 24.208 hybrid contribution 0.049 0.319 -1.049 1.098 sum -2.898 -21.470 9.078 23.490 Atomic orbital electron populations 1.21794 0.93933 1.02306 1.02805 1.20120 0.96512 0.88621 1.04013 1.21465 1.05443 0.96957 0.87346 1.21489 1.06778 0.92283 0.99793 1.21932 1.08380 0.96878 0.89884 1.16856 0.76954 0.81184 0.86267 1.90786 1.54296 1.83128 1.13196 1.45811 1.65866 1.12493 1.11857 1.21493 1.01401 0.83186 0.93396 1.23324 0.90146 0.93592 0.92435 0.90599 1.23135 1.01808 0.94535 0.98901 1.22334 0.99656 0.97573 0.95124 1.23876 0.97157 0.82101 0.96304 1.22426 0.93418 0.92856 0.91304 1.45388 1.38177 1.10109 1.39287 1.18905 1.22116 0.86403 1.06890 0.89939 1.24846 1.00539 0.97511 0.97576 1.69869 1.33404 1.26467 1.26741 0.86079 0.77301 0.82791 0.79463 1.21586 1.21583 1.20454 1.22398 0.98514 0.87040 0.89113 1.88765 1.38124 1.30236 1.70417 1.73615 1.17857 1.02367 1.15022 1.43334 1.47538 1.08479 1.09951 0.71088 0.91797 0.92607 0.91699 0.90602 0.88998 0.82068 0.75214 0.90024 0.90320 0.90291 0.90458 0.90147 0.90479 0.93741 0.94331 0.93606 0.94754 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.89 37.16 0.37 -0.28 16 2 C -0.05 -0.23 6.49 -27.88 -0.18 -0.41 16 3 C 0.01 0.11 6.48 -82.21 -0.53 -0.43 16 4 C -0.18 -1.84 10.73 -39.36 -0.42 -2.27 16 5 C -0.01 -0.12 7.13 -82.76 -0.59 -0.71 16 6 C 0.60 8.73 7.82 -12.39 -0.10 8.63 16 7 O -0.54 -9.04 16.93 5.30 0.09 -8.95 16 8 N -0.71 -9.52 5.55 -61.29 -0.34 -9.86 16 9 C 0.13 1.65 5.41 -4.04 -0.02 1.63 16 10 C 0.06 0.88 3.38 -25.64 -0.09 0.80 16 11 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 12 C -0.15 -1.87 6.60 -24.58 -0.16 -2.04 16 13 C -0.11 -1.82 6.46 -25.49 -0.16 -1.98 16 14 C 0.05 0.90 1.66 -90.66 -0.15 0.75 16 15 C 0.13 2.76 8.20 -8.04 -0.07 2.69 16 16 N -0.60 -15.76 3.73 -184.62 -0.69 -16.45 16 17 C -0.22 -6.10 10.73 -15.06 -0.16 -6.26 16 18 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.92 -27.45 11.82 55.49 0.66 -26.79 16 21 Si 0.91 22.11 29.56 -169.99 -5.02 17.09 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.16 3.77 6.73 -7.88 -0.05 3.71 16 26 O -0.36 -6.38 11.02 -35.23 -0.39 -6.77 16 27 N -0.25 -2.95 11.92 33.42 0.40 -2.55 16 28 N -0.38 -3.10 6.83 33.50 0.23 -2.87 16 29 H 0.44 2.09 8.96 -190.44 -1.71 0.38 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.41 5.41 8.20 -40.82 -0.33 5.08 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 41 H 0.08 1.42 7.82 -51.93 -0.41 1.01 16 42 H 0.08 1.26 7.81 -51.93 -0.41 0.85 16 43 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 46 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.06 1.58 7.40 -51.93 -0.38 1.20 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -35.05 391.83 -10.27 -45.31 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.69 Total: 2.41 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -2.42 Total: 3.51 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.25 Total: -58.51 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.30 Total: -15.72 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.05 -10.27 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053574325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.420 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds