Wall clock time and date at job start Tue Mar 31 2020 18:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47010 * 2 1 4 4 C 1.35367 * 126.38340 * 85.00573 * 3 2 1 5 5 C 1.41507 * 105.50516 * 179.97438 * 4 3 2 6 6 C 1.47706 * 126.52033 * 179.97438 * 5 4 3 7 7 O 1.21576 * 119.99875 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99937 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99802 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47051 * 180.02562 * 9 8 6 11 11 H 1.08996 * 110.64016 * 307.87563 * 10 9 8 12 12 C 1.55056 * 110.58326 * 185.00046 * 10 9 8 13 13 C 1.55023 * 102.12990 * 204.93500 * 12 10 9 14 14 C 1.53325 * 103.78634 * 20.86591 * 13 12 10 15 15 C 1.52646 * 115.56358 * 133.64561 * 14 13 12 16 16 N 1.47223 * 87.78158 * 90.04343 * 15 14 13 17 17 C 1.36942 * 135.96799 * 206.41017 * 16 15 14 18 18 H 1.07998 * 119.99662 * 6.48846 * 17 16 15 19 19 C 1.38810 * 119.99956 * 186.48255 * 17 16 15 20 20 N 1.31624 * 120.00077 * 6.42088 * 19 17 16 21 21 Si 1.86795 * 119.99801 * 186.41661 * 19 17 16 22 22 H 1.48495 * 109.47273 * 265.02243 * 21 19 17 23 23 H 1.48505 * 109.47005 * 145.02269 * 21 19 17 24 24 H 1.48507 * 109.47115 * 25.02459 * 21 19 17 25 25 C 1.47220 * 88.06553 * 26.66837 * 16 15 14 26 26 O 1.42839 * 108.32946 * 1.60036 * 14 13 12 27 27 N 1.31811 * 106.96066 * 0.24221 * 5 4 3 28 28 N 1.28468 * 110.07525 * 359.58995 * 27 5 4 29 29 H 0.96997 * 124.88771 * 180.13148 * 28 27 5 30 30 H 1.09004 * 109.46652 * 299.99436 * 1 2 3 31 31 H 1.08995 * 109.47348 * 59.99867 * 1 2 3 32 32 H 1.09001 * 109.46758 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47146 * 240.00400 * 2 1 3 34 34 H 1.08995 * 109.47348 * 120.00133 * 2 1 3 35 35 H 1.07998 * 127.24954 * 359.97438 * 4 3 2 36 36 H 0.96995 * 120.00214 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.46906 * 60.00262 * 9 8 6 38 38 H 1.09003 * 109.47144 * 300.00390 * 9 8 6 39 39 H 1.09004 * 110.87195 * 86.77921 * 12 10 9 40 40 H 1.09003 * 110.87272 * 323.09601 * 12 10 9 41 41 H 1.09002 * 110.56851 * 262.28773 * 13 12 10 42 42 H 1.08999 * 110.69205 * 139.49939 * 13 12 10 43 43 H 1.08996 * 113.50317 * 335.31791 * 15 14 13 44 44 H 1.09000 * 113.55597 * 204.78002 * 15 14 13 45 45 H 0.97001 * 119.99419 * 179.97438 * 20 19 17 46 46 H 1.09003 * 113.50121 * 88.06251 * 25 16 15 47 47 H 1.09000 * 113.49959 * 218.60064 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2105 2.2095 1.0857 5 6 2.6932 3.4412 0.5833 6 6 3.0423 4.6376 1.3761 7 8 2.9230 4.6212 2.5859 8 7 3.4932 5.7473 0.7583 9 6 3.8390 6.9341 1.5446 10 6 4.3194 8.0444 0.6079 11 1 5.1089 7.6784 -0.0485 12 6 4.8108 9.2694 1.4214 13 6 4.6214 10.4292 0.4104 14 6 3.5966 9.8792 -0.5887 15 6 2.4524 10.8243 -0.9462 16 7 3.2896 11.3295 -2.0468 17 6 3.3909 12.5007 -2.7492 18 1 2.8120 13.3617 -2.4495 19 6 4.2376 12.5811 -3.8462 20 7 4.8461 11.5010 -4.2885 21 14 4.5132 14.2221 -4.6949 22 1 3.5857 14.3450 -5.8480 23 1 5.9156 14.3007 -5.1771 24 1 4.2576 15.3254 -3.7342 25 6 3.9659 10.0219 -2.0661 26 8 3.2165 8.5686 -0.1667 27 7 2.7664 3.3198 -0.7271 28 7 2.3892 2.1444 -1.0829 29 1 2.3604 1.8242 -1.9980 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0237 1.9528 2.1179 36 1 3.5880 5.7605 -0.2069 37 1 4.6320 6.6845 2.2495 38 1 2.9605 7.2759 2.0921 39 1 5.8606 9.1591 1.6936 40 1 4.1930 9.4210 2.3066 41 1 5.5617 10.6568 -0.0918 42 1 4.2311 11.3158 0.9100 43 1 2.2484 11.5699 -0.1779 44 1 1.5528 10.3105 -1.2850 45 1 5.4375 11.5573 -5.0553 46 1 3.4776 9.2894 -2.7089 47 1 5.0393 10.0903 -2.2430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053574325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:21 Heat of formation + Delta-G solvation = 19.402034 kcal Electronic energy + Delta-G solvation = -28178.506982 eV Core-core repulsion = 24170.613245 eV Total energy + Delta-G solvation = -4007.893737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.71068 -41.47671 -40.38624 -38.21273 -35.75673 -35.17041 -34.16993 -33.17371 -32.85687 -30.82266 -30.16659 -28.80673 -26.63258 -25.96745 -24.70571 -24.32534 -23.34342 -22.35044 -22.04417 -20.95825 -20.45496 -18.77572 -18.66092 -18.06569 -17.69045 -17.09003 -16.99816 -16.72793 -16.28767 -15.85427 -15.69049 -15.58120 -15.26782 -14.99993 -14.73336 -14.66934 -14.30374 -14.22465 -13.97942 -13.56374 -13.32443 -13.29913 -12.93752 -12.85079 -12.64476 -12.51547 -12.41077 -12.26819 -12.13989 -12.07901 -11.97091 -11.73063 -11.56384 -11.40865 -11.26821 -10.88246 -10.52563 -10.33426 -10.10113 -9.97258 -9.01240 -7.96845 -5.30718 0.48296 1.10353 1.44867 1.47002 1.56809 1.84713 2.20358 2.33407 2.40926 2.76708 3.25773 3.37320 3.41137 3.62687 3.66725 3.68320 3.74618 3.97225 4.00341 4.13483 4.30954 4.42498 4.47062 4.52344 4.54723 4.59257 4.70903 4.72952 4.81591 4.81982 4.89207 4.95107 5.00399 5.08346 5.08557 5.12767 5.16056 5.20258 5.29299 5.32520 5.35959 5.40997 5.42625 5.82054 6.08074 6.13444 6.39215 6.84021 6.84300 7.09908 7.53087 8.53608 9.22383 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.002170 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.703302 B =12897.822996 C =13984.725348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C 0.035 3.965 4 C -0.198 4.198 5 C -0.038 4.038 6 C 0.601 3.399 7 O -0.568 6.568 8 N -0.708 5.708 9 C 0.134 3.866 10 C 0.061 3.939 11 H 0.079 0.921 12 C -0.130 4.130 13 C -0.109 4.109 14 C 0.074 3.926 15 C 0.123 3.877 16 N -0.627 5.627 17 C -0.230 4.230 18 H 0.090 0.910 19 C -0.067 4.067 20 N -0.954 5.954 21 Si 0.985 3.015 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.263 1.263 25 C 0.153 3.847 26 O -0.370 6.370 27 N -0.273 5.273 28 N -0.365 5.365 29 H 0.460 0.540 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.165 0.835 36 H 0.412 0.588 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.033 0.967 45 H 0.250 0.750 46 H 0.006 0.994 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 -23.431 11.523 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 C -0.091 4.091 4 C -0.226 4.226 5 C -0.197 4.197 6 C 0.387 3.613 7 O -0.446 6.446 8 N -0.358 5.358 9 C 0.011 3.989 10 C 0.003 3.997 11 H 0.097 0.903 12 C -0.168 4.168 13 C -0.146 4.146 14 C 0.033 3.967 15 C -0.003 4.003 16 N -0.355 5.355 17 C -0.358 4.358 18 H 0.108 0.892 19 C -0.260 4.260 20 N -0.602 5.602 21 Si 0.813 3.187 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.187 1.187 25 C 0.027 3.973 26 O -0.288 6.288 27 N -0.111 5.111 28 N -0.082 5.082 29 H 0.308 0.692 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.183 0.817 36 H 0.248 0.752 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.024 0.976 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.987 -22.670 11.192 25.458 hybrid contribution -0.016 0.461 -1.416 1.490 sum -3.002 -22.209 9.776 24.450 Atomic orbital electron populations 1.21790 0.93788 1.03233 1.01971 1.20295 0.96418 0.86317 1.05900 1.21935 1.03093 0.97943 0.86176 1.21690 1.07858 0.92121 1.00899 1.21862 1.10214 0.97168 0.90477 1.17112 0.76401 0.81733 0.86095 1.90751 1.55762 1.83767 1.14349 1.45853 1.65525 1.12562 1.11901 1.21497 1.01770 0.82523 0.93111 1.23540 0.89158 0.94459 0.92531 0.90286 1.23129 1.04090 0.91509 0.98073 1.22319 0.97891 0.99267 0.95155 1.23410 0.96294 0.82912 0.94100 1.22538 0.93508 0.93755 0.90453 1.45706 1.39612 1.10139 1.40057 1.19348 1.21826 0.87535 1.07073 0.89216 1.25763 1.00598 1.01148 0.98534 1.70061 1.34267 1.28702 1.27212 0.84967 0.76690 0.78805 0.78279 1.21454 1.21820 1.18730 1.22330 0.96489 0.86098 0.92398 1.88754 1.39723 1.29370 1.70978 1.73541 1.18850 1.04012 1.14647 1.43441 1.46131 1.07584 1.11028 0.69238 0.93024 0.93092 0.89910 0.88122 0.87713 0.81738 0.75187 0.87978 0.90937 0.87371 0.88510 0.91454 0.89734 0.91679 0.94904 0.94108 0.97570 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 71.98 0.71 -0.27 16 2 C -0.05 -0.30 6.49 29.85 0.19 -0.11 16 3 C 0.04 0.50 6.48 41.40 0.27 0.76 16 4 C -0.20 -4.08 10.73 22.41 0.24 -3.84 16 5 C -0.04 -0.97 7.13 42.46 0.30 -0.67 16 6 C 0.60 17.56 7.82 86.75 0.68 18.24 16 7 O -0.57 -19.23 16.93 -3.96 -0.07 -19.30 16 8 N -0.71 -18.91 5.55 -466.08 -2.59 -21.50 16 9 C 0.13 3.27 5.41 86.38 0.47 3.73 16 10 C 0.06 1.61 3.38 31.30 0.11 1.71 16 11 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 12 C -0.13 -2.98 6.60 31.99 0.21 -2.77 16 13 C -0.11 -3.46 6.46 31.40 0.20 -3.26 16 14 C 0.07 2.89 1.66 -10.82 -0.02 2.87 16 15 C 0.12 5.37 8.20 83.40 0.68 6.05 16 16 N -0.63 -33.54 3.73 -739.11 -2.75 -36.30 16 17 C -0.23 -13.15 10.73 84.03 0.90 -12.25 16 18 H 0.09 4.84 7.84 -2.91 -0.02 4.82 16 19 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 20 N -0.95 -58.77 11.82 21.65 0.26 -58.52 16 21 Si 0.99 45.89 29.56 68.60 2.03 47.92 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 25 C 0.15 7.72 6.73 83.50 0.56 8.29 16 26 O -0.37 -13.06 11.02 -148.98 -1.64 -14.71 16 27 N -0.27 -6.32 11.92 -48.17 -0.57 -6.90 16 28 N -0.37 -5.53 6.83 -47.93 -0.33 -5.86 16 29 H 0.46 3.55 8.96 -220.00 -1.97 1.57 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.41 10.96 8.20 -92.71 -0.76 10.20 16 37 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 40 H 0.10 1.91 8.05 -2.39 -0.02 1.89 16 41 H 0.07 2.34 7.82 -2.39 -0.02 2.32 16 42 H 0.08 2.59 7.81 -2.39 -0.02 2.57 16 43 H 0.07 2.56 7.91 -2.39 -0.02 2.54 16 44 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 46 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.04 1.97 7.40 -2.39 -0.02 1.95 16 Total: -1.00 -78.33 391.83 -1.42 -79.75 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -1.74 Total: 20.33 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 5.98 Total: 15.08 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -5.99 Total: -129.07 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.71 Total: -34.01 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -78.33 -1.42 -79.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053574325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.153 kcal (2) G-P(sol) polarization free energy of solvation -78.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds