Wall clock time and date at job start Tue Mar 31 2020 18:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47449 * 2 1 4 4 N 1.33318 * 126.10360 * 270.00362 * 3 2 1 5 5 C 1.30860 * 109.68130 * 179.97438 * 4 3 2 6 6 N 1.34499 * 109.16445 * 359.75869 * 5 4 3 7 7 H 0.96997 * 126.46938 * 180.25536 * 6 5 4 8 8 C 1.36660 * 126.10655 * 89.99508 * 3 2 1 9 9 C 1.46764 * 126.84657 * 359.96891 * 8 3 2 10 10 O 1.21684 * 119.99961 * 359.97438 * 9 8 3 11 11 N 1.34779 * 120.00243 * 179.97438 * 9 8 3 12 12 C 1.46490 * 120.00203 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47474 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.82319 * 59.43096 * 13 12 11 15 15 C 1.54471 * 109.91343 * 180.37932 * 13 12 11 16 16 C 1.55499 * 102.39227 * 140.91823 * 15 13 12 17 17 C 1.53881 * 100.76022 * 327.03014 * 16 15 13 18 18 C 1.52378 * 115.67687 * 263.23651 * 17 16 15 19 19 N 1.47276 * 87.70244 * 218.74148 * 18 17 16 20 20 C 1.36936 * 135.93576 * 205.92145 * 19 18 17 21 21 H 1.08005 * 119.99952 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99801 * 180.02562 * 20 19 18 23 23 N 1.31614 * 120.00324 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99953 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47075 * 59.99561 * 24 22 20 26 26 H 1.48493 * 109.47394 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47114 * 300.00060 * 24 22 20 28 28 C 1.47273 * 88.12953 * 26.17582 * 19 18 17 29 29 O 1.42413 * 106.67075 * 34.96969 * 17 16 15 30 30 H 1.08994 * 109.46958 * 300.00708 * 1 2 3 31 31 H 1.09008 * 109.46738 * 60.00106 * 1 2 3 32 32 H 1.08998 * 109.47397 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46950 * 239.99982 * 2 1 3 34 34 H 1.08999 * 109.46632 * 120.00074 * 2 1 3 35 35 H 1.08003 * 125.41582 * 180.02562 * 5 4 3 36 36 H 0.97001 * 119.99516 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.47433 * 59.99569 * 12 11 9 38 38 H 1.09000 * 109.47239 * 299.99952 * 12 11 9 39 39 H 1.09003 * 110.81511 * 259.14403 * 15 13 12 40 40 H 1.08997 * 110.82218 * 22.49347 * 15 13 12 41 41 H 1.08997 * 111.16294 * 209.14843 * 16 15 13 42 42 H 1.09004 * 111.15839 * 84.90192 * 16 15 13 43 43 H 1.09001 * 113.51593 * 104.03916 * 18 17 16 44 44 H 1.08996 * 113.51236 * 333.44916 * 18 17 16 45 45 H 0.97007 * 120.00452 * 180.02562 * 23 22 20 46 46 H 1.08999 * 113.51652 * 88.52643 * 28 19 18 47 47 H 1.08999 * 113.51521 * 219.11206 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.2943 2.1614 -1.0771 5 6 2.7123 3.3450 -0.7072 6 7 2.7284 3.4075 0.6362 7 1 2.9926 4.1698 1.1748 8 6 2.3009 2.1800 1.1041 9 6 2.1567 1.7747 2.5073 10 8 1.7603 0.6570 2.7800 11 7 2.4634 2.6403 3.4938 12 6 2.3200 2.2355 4.8943 13 6 2.7300 3.3947 5.8049 14 1 2.1002 4.2617 5.6057 15 6 2.5917 2.9753 7.2851 16 6 3.8399 3.6349 7.9369 17 6 4.8487 3.5480 6.7781 18 6 5.8041 2.3617 6.8221 19 7 6.8567 3.2671 6.3308 20 6 8.0212 3.1301 5.6235 21 1 8.3412 2.1525 5.2943 22 6 8.7908 4.2475 5.3304 23 7 8.4011 5.4388 5.7320 24 14 10.3797 4.0605 4.3661 25 1 10.0849 3.4690 3.0362 26 1 11.0093 5.3933 4.1860 27 1 11.3077 3.1705 5.1089 28 6 6.1128 4.3835 6.9384 29 8 4.1070 3.7300 5.5761 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9948 4.1458 -1.3745 36 1 2.7790 3.5314 3.2763 37 1 2.9593 1.3748 5.0911 38 1 1.2815 1.9692 5.0911 39 1 1.6732 3.3736 7.7163 40 1 2.6261 1.8905 7.3853 41 1 4.1815 3.0634 8.7998 42 1 3.6406 4.6717 8.2080 43 1 5.5477 1.5704 6.1177 44 1 5.9873 1.9880 7.8295 45 1 8.9388 6.2197 5.5269 46 1 6.3815 4.5704 7.9781 47 1 6.1153 5.2891 6.3318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053693558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:49 Heat of formation + Delta-G solvation = 7.442928 kcal Electronic energy + Delta-G solvation = -29254.475313 eV Core-core repulsion = 25246.062990 eV Total energy + Delta-G solvation = -4008.412322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.26070 -41.51173 -40.29385 -38.14740 -35.99400 -34.97661 -34.17315 -33.24663 -32.96725 -31.04683 -29.98700 -28.62082 -26.56256 -25.87872 -24.78759 -23.75726 -23.17313 -22.53419 -22.01644 -20.71391 -20.46901 -19.72106 -18.73715 -17.75872 -17.30364 -17.07848 -16.94889 -16.67864 -16.24633 -15.78514 -15.70522 -15.56740 -15.29074 -15.06526 -14.83027 -14.66173 -14.39480 -14.23272 -14.07316 -13.62983 -13.32235 -13.18299 -13.13546 -12.82857 -12.70626 -12.56696 -12.43695 -12.36838 -12.18587 -11.96857 -11.65181 -11.53185 -11.34566 -11.26420 -11.06744 -10.97058 -10.91408 -10.30236 -10.24941 -9.54575 -8.94982 -7.93668 -5.25991 0.22600 1.41004 1.44235 1.50499 1.80153 1.87908 2.09242 2.22696 2.43556 2.76358 3.28062 3.42063 3.47418 3.52380 3.71144 3.75078 3.85270 3.94026 4.05240 4.17512 4.20253 4.41985 4.47960 4.52196 4.56029 4.59782 4.66708 4.70755 4.74838 4.81485 4.89918 4.95568 4.98989 5.06713 5.11129 5.19141 5.20580 5.26010 5.27883 5.31604 5.34674 5.48920 5.51199 5.89938 6.25246 6.34637 6.37673 6.87998 6.88031 7.02383 7.56275 8.57239 9.23599 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010178 B = 0.003469 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.273715 B = 8070.241618 C = 9965.609568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.050 4.050 3 C 0.084 3.916 4 N -0.531 5.531 5 C 0.237 3.763 6 N -0.544 5.544 7 H 0.437 0.563 8 C -0.112 4.112 9 C 0.591 3.409 10 O -0.556 6.556 11 N -0.713 5.713 12 C 0.117 3.883 13 C 0.060 3.940 14 H 0.106 0.894 15 C -0.132 4.132 16 C -0.129 4.129 17 C 0.081 3.919 18 C 0.103 3.897 19 N -0.638 5.638 20 C -0.233 4.233 21 H 0.076 0.924 22 C -0.062 4.062 23 N -0.949 5.949 24 Si 0.977 3.023 25 H -0.280 1.280 26 H -0.289 1.289 27 H -0.277 1.277 28 C 0.159 3.841 29 O -0.363 6.363 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.261 0.739 36 H 0.405 0.595 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.034 0.966 44 H 0.061 0.939 45 H 0.249 0.751 46 H 0.038 0.962 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.915 -1.916 -3.884 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.089 4.089 3 C -0.051 4.051 4 N -0.251 5.251 5 C -0.047 4.047 6 N -0.150 5.150 7 H 0.278 0.722 8 C -0.228 4.228 9 C 0.379 3.621 10 O -0.435 6.435 11 N -0.363 5.363 12 C -0.006 4.006 13 C 0.003 3.997 14 H 0.123 0.877 15 C -0.170 4.170 16 C -0.167 4.167 17 C 0.041 3.959 18 C -0.023 4.023 19 N -0.364 5.364 20 C -0.361 4.361 21 H 0.094 0.906 22 C -0.256 4.256 23 N -0.598 5.598 24 Si 0.805 3.195 25 H -0.206 1.206 26 H -0.214 1.214 27 H -0.203 1.203 28 C 0.033 3.967 29 O -0.282 6.282 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.276 0.724 36 H 0.240 0.760 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.136 0.864 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.903 -2.815 -4.794 19.704 hybrid contribution 1.863 1.113 0.589 2.249 sum -17.040 -1.702 -4.204 17.634 Atomic orbital electron populations 1.21529 0.93325 1.02542 1.01087 1.20053 0.97121 0.88601 1.03093 1.21279 0.99099 0.97516 0.87187 1.70132 1.20319 1.04065 1.30618 1.26075 0.98487 0.97851 0.82327 1.43347 1.49668 1.12729 1.09225 0.72162 1.20817 1.17714 0.89718 0.94536 1.16994 0.77280 0.84555 0.83305 1.90777 1.48497 1.20787 1.83485 1.45734 1.67124 1.17055 1.06404 1.21865 1.02122 0.97332 0.79276 1.23343 0.83434 0.96993 0.95960 0.87655 1.23084 0.99778 1.02388 0.91744 1.22959 0.93619 1.03062 0.97058 1.22924 0.91584 0.96289 0.85148 1.22965 0.87594 0.94302 0.97392 1.45846 1.23661 1.05682 1.61176 1.19211 0.97044 0.93739 1.26076 0.90621 1.25563 1.02328 0.95002 1.02661 1.69994 1.40166 0.97955 1.51685 0.85186 0.79288 0.76546 0.78513 1.20643 1.21444 1.20301 1.22068 0.86237 0.93074 0.95291 1.88331 1.19478 1.87109 1.33285 0.93929 0.92645 0.90675 0.90136 0.90453 0.72363 0.75966 0.92972 0.88456 0.86446 0.89514 0.88321 0.89030 0.94725 0.92106 0.94183 0.94418 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.90 71.98 0.71 -2.05 16 2 C -0.05 -1.28 5.93 29.85 0.18 -1.11 16 3 C 0.08 2.31 6.40 41.96 0.27 2.58 16 4 N -0.53 -13.44 11.20 -187.59 -2.10 -15.54 16 5 C 0.24 4.19 13.01 180.33 2.35 6.54 16 6 N -0.54 -10.23 6.07 -188.04 -1.14 -11.37 16 7 H 0.44 5.81 8.32 -92.71 -0.77 5.04 16 8 C -0.11 -2.94 7.08 40.01 0.28 -2.66 16 9 C 0.59 17.05 7.79 86.47 0.67 17.73 16 10 O -0.56 -18.81 14.82 -4.30 -0.06 -18.87 16 11 N -0.71 -17.74 5.46 -467.01 -2.55 -20.30 16 12 C 0.12 2.76 5.24 86.38 0.45 3.22 16 13 C 0.06 1.34 3.61 31.09 0.11 1.46 16 14 H 0.11 1.88 8.14 -2.39 -0.02 1.87 16 15 C -0.13 -2.29 6.56 31.95 0.21 -2.08 16 16 C -0.13 -2.97 6.49 31.75 0.21 -2.77 16 17 C 0.08 2.89 1.55 -10.91 -0.02 2.88 16 18 C 0.10 4.23 8.25 83.48 0.69 4.92 16 19 N -0.64 -33.81 3.79 -740.55 -2.81 -36.62 16 20 C -0.23 -13.60 10.74 84.03 0.90 -12.70 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 23 N -0.95 -57.73 11.52 21.65 0.25 -57.48 16 24 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 28 C 0.16 7.50 6.95 83.47 0.58 8.08 16 29 O -0.36 -12.53 10.68 -148.98 -1.59 -14.12 16 30 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.22 6.48 -2.39 -0.02 2.20 16 35 H 0.26 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.41 8.97 7.64 -92.71 -0.71 8.26 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.44 7.85 -2.39 -0.02 1.42 16 41 H 0.10 2.03 7.93 -2.39 -0.02 2.01 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 2.26 7.98 -2.39 -0.02 2.24 16 45 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 46 H 0.04 1.75 8.13 -2.39 -0.02 1.73 16 47 H 0.04 2.07 7.17 -2.39 -0.02 2.05 16 Total: -1.00 -81.59 386.53 -0.40 -81.99 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -0.48 Total: 22.80 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 8.06 Total: 20.86 kcal Atomic # 7 Polarization: -132.95 SS G_CDS: -8.35 Total: -141.30 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.66 Total: -32.99 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -81.59 -0.40 -81.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053693558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.428 kcal (2) G-P(sol) polarization free energy of solvation -81.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds