Wall clock time and date at job start Tue Mar 31 2020 18:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46927 * 2 1 4 4 C 1.34668 * 126.59259 * 84.97637 * 3 2 1 5 5 N 1.34127 * 108.02102 * 180.02562 * 4 3 2 6 6 C 1.30499 * 109.25339 * 359.97438 * 5 4 3 7 7 C 1.50705 * 125.64350 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47402 * 305.01936 * 7 6 5 9 9 O 1.21285 * 119.99783 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00147 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00051 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.97278 * 37.69112 * 11 10 8 13 13 C 1.55021 * 111.10305 * 273.54393 * 11 10 8 14 14 O 1.43911 * 105.18234 * 206.02787 * 13 11 10 15 15 C 1.42391 * 109.55584 * 24.29253 * 14 13 11 16 16 C 1.52707 * 116.14328 * 129.84680 * 15 14 13 17 17 N 1.47219 * 87.79334 * 90.70657 * 16 15 14 18 18 C 1.36931 * 135.97128 * 206.43699 * 17 16 15 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72306 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 C 1.47216 * 88.05150 * 26.69097 * 17 16 15 27 27 C 1.53659 * 108.53510 * 358.08998 * 15 14 13 28 28 N 1.35043 * 108.70486 * 0.26416 * 6 5 4 29 29 H 0.96993 * 126.39957 * 179.74018 * 28 6 5 30 30 H 1.08998 * 109.47149 * 300.00044 * 1 2 3 31 31 H 1.09000 * 109.46951 * 60.00104 * 1 2 3 32 32 H 1.09001 * 109.47025 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47149 * 239.99956 * 2 1 3 34 34 H 1.09000 * 109.46951 * 119.99896 * 2 1 3 35 35 H 1.08001 * 125.98882 * 0.03834 * 4 3 2 36 36 H 1.09004 * 109.46675 * 185.02087 * 7 6 5 37 37 H 1.08995 * 109.47417 * 65.02940 * 7 6 5 38 38 H 0.96996 * 120.00240 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.29717 * 87.10360 * 13 11 10 40 40 H 1.08999 * 110.30468 * 324.95775 * 13 11 10 41 41 H 1.08999 * 113.49372 * 335.97682 * 16 15 14 42 42 H 1.08994 * 113.55796 * 205.44429 * 16 15 14 43 43 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 44 44 H 1.09003 * 113.49350 * 88.04070 * 26 17 16 45 45 H 1.08998 * 113.49476 * 218.57645 * 26 17 16 46 46 H 1.09006 * 110.93065 * 97.29560 * 27 15 14 47 47 H 1.08997 * 110.93072 * 220.95444 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2106 2.2093 1.0771 5 7 2.6691 3.3957 0.6515 6 6 2.7822 3.3722 -0.6484 7 6 3.2652 4.5115 -1.5086 8 6 2.4339 5.7375 -1.2319 9 8 1.5377 5.6910 -0.4160 10 7 2.6862 6.8857 -1.8909 11 6 1.8783 8.0777 -1.6215 12 1 1.6312 8.1503 -0.5624 13 6 0.5983 8.0939 -2.4958 14 8 0.2482 9.4837 -2.6258 15 6 1.4088 10.2871 -2.4388 16 6 1.6748 11.3443 -3.5081 17 7 0.8834 12.2831 -2.6958 18 6 0.1338 13.4034 -2.9366 19 1 0.0314 13.7785 -3.9442 20 6 -0.4999 14.0534 -1.8863 21 7 -0.3756 13.5959 -0.6585 22 14 -1.5289 15.5772 -2.2158 23 1 -2.6349 15.2360 -3.1461 24 1 -2.0937 16.0789 -0.9374 25 1 -0.6755 16.6284 -2.8257 26 6 1.2564 11.4935 -1.5106 27 6 2.5953 9.3644 -2.1194 28 7 2.3898 2.1599 -1.0954 29 1 2.3674 1.8668 -2.0197 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0183 1.9344 2.1037 36 1 3.1710 4.2383 -2.5597 37 1 4.3100 4.7217 -1.2802 38 1 3.4027 6.9228 -2.5437 39 1 -0.2041 7.5464 -2.0015 40 1 0.8040 7.6624 -3.4754 41 1 1.2199 11.1124 -4.4711 42 1 2.7252 11.6225 -3.5939 43 1 -0.8181 14.0504 0.0754 44 1 2.1936 11.8116 -1.0539 45 1 0.4481 11.3877 -0.7870 46 1 3.1826 9.1612 -3.0150 47 1 3.2199 9.7908 -1.3345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053836710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:25 Heat of formation + Delta-G solvation = 41.037466 kcal Electronic energy + Delta-G solvation = -28151.671516 eV Core-core repulsion = 24144.715962 eV Total energy + Delta-G solvation = -4006.955554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.38599 -40.25777 -39.14645 -36.28835 -34.59241 -34.41679 -32.75403 -32.08579 -31.81389 -30.17919 -28.17901 -27.15077 -25.65790 -24.72021 -23.77716 -22.52866 -21.67349 -21.21174 -20.96688 -20.25345 -19.01794 -17.72009 -17.36646 -16.67866 -16.40832 -15.74935 -15.37650 -15.09716 -14.99853 -14.74292 -14.52680 -14.43332 -14.02533 -13.82090 -13.58765 -13.48156 -13.21086 -13.11778 -12.99844 -12.85359 -12.42039 -12.01873 -11.91712 -11.81134 -11.60823 -11.46122 -11.14936 -11.02877 -10.77044 -10.46632 -10.19468 -10.16212 -10.06575 -9.97111 -9.80316 -9.43505 -9.10068 -8.77824 -8.59894 -8.47070 -6.82367 -5.68686 -3.00824 1.69816 2.50949 2.59836 2.89845 3.21083 3.45469 3.48836 3.50793 3.99733 4.23063 4.39793 4.48470 4.52952 4.53974 4.59046 4.78248 4.87021 4.95662 5.05322 5.09500 5.12512 5.18945 5.28764 5.32195 5.34692 5.42575 5.46215 5.52957 5.67103 5.78079 5.87240 5.92301 6.00605 6.03395 6.10663 6.34422 6.41482 6.53648 6.57171 6.65627 6.97348 7.05750 7.26674 7.36370 7.58569 7.82535 7.91999 8.05954 8.13186 9.10504 9.77601 10.69890 11.49036 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027297 B = 0.001925 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.505990 B =14545.389544 C =14920.465804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.045 4.045 3 C -0.024 4.024 4 C -0.020 4.020 5 N -0.456 5.456 6 C 0.216 3.784 7 C -0.053 4.053 8 C 0.515 3.485 9 O -0.507 6.507 10 N -0.720 5.720 11 C 0.115 3.885 12 H 0.107 0.893 13 C 0.042 3.958 14 O -0.332 6.332 15 C 0.057 3.943 16 C 0.112 3.888 17 N -0.602 5.602 18 C -0.216 4.216 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.152 3.848 27 C -0.141 4.141 28 N -0.563 5.563 29 H 0.415 0.585 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.168 0.832 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.400 0.600 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.254 0.746 44 H 0.037 0.963 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.811 -28.786 -3.577 30.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.169 4.169 5 N -0.174 5.174 6 C -0.048 4.048 7 C -0.095 4.095 8 C 0.299 3.701 9 O -0.380 6.380 10 N -0.374 5.374 11 C 0.010 3.990 12 H 0.125 0.875 13 C -0.037 4.037 14 O -0.250 6.250 15 C 0.016 3.984 16 C -0.014 4.014 17 N -0.328 5.328 18 C -0.343 4.343 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.566 5.566 22 Si 0.744 3.256 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.026 3.974 27 C -0.180 4.180 28 N -0.167 5.167 29 H 0.252 0.748 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.185 0.815 36 H 0.125 0.875 37 H 0.138 0.862 38 H 0.235 0.765 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.876 -27.735 -2.353 29.534 hybrid contribution -0.141 -0.004 -1.419 1.426 sum 9.735 -27.739 -3.773 29.639 Atomic orbital electron populations 1.21788 0.94327 1.01889 1.02702 1.19977 0.96137 0.89020 1.03269 1.21244 1.08839 0.96563 0.87283 1.22127 1.06020 0.90018 0.98713 1.70249 1.17264 1.21820 1.08052 1.22195 1.04777 0.86652 0.91161 1.19910 1.01408 0.89394 0.98788 1.20132 0.84755 0.83966 0.81281 1.90817 1.30908 1.83845 1.32421 1.45821 1.37137 1.10448 1.43958 1.22745 0.91092 0.83592 1.01613 0.87472 1.23746 0.96869 0.84921 0.98143 1.88487 1.30299 1.14159 1.92044 1.23395 0.83409 0.90839 1.00755 1.22684 0.95142 0.88388 0.95223 1.45391 1.54111 1.29953 1.03312 1.18842 1.21523 1.00395 0.93557 0.90184 1.24794 1.00844 0.99563 0.95287 1.69812 1.47170 1.41278 0.98375 0.86172 0.80112 0.82502 0.76800 1.21073 1.21553 1.21224 1.22436 0.98719 0.84101 0.92109 1.23132 0.98670 0.94239 1.01965 1.43059 1.51543 1.12544 1.09541 0.74759 0.91895 0.92842 0.92032 0.91386 0.89445 0.81486 0.87539 0.86188 0.76525 0.89769 0.92686 0.93684 0.93981 0.93590 0.94539 0.90291 0.90270 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.05 -0.24 6.49 -27.88 -0.18 -0.42 16 3 C -0.02 -0.20 6.49 -81.60 -0.53 -0.73 16 4 C -0.02 -0.22 11.79 -17.81 -0.21 -0.43 16 5 N -0.46 -6.26 10.58 -10.81 -0.11 -6.37 16 6 C 0.22 2.26 6.96 -155.41 -1.08 1.18 16 7 C -0.05 -0.39 6.33 -29.04 -0.18 -0.57 16 8 C 0.51 5.90 7.82 -10.99 -0.09 5.82 16 9 O -0.51 -8.54 15.30 5.55 0.08 -8.46 16 10 N -0.72 -7.04 5.24 -51.50 -0.27 -7.31 16 11 C 0.11 1.56 3.37 -65.54 -0.22 1.34 16 12 H 0.11 1.72 7.74 -51.93 -0.40 1.32 16 13 C 0.04 0.65 7.49 38.23 0.29 0.94 16 14 O -0.33 -6.91 11.18 -35.23 -0.39 -7.31 16 15 C 0.06 1.12 1.75 -90.45 -0.16 0.96 16 16 C 0.11 2.36 8.20 -8.06 -0.07 2.30 16 17 N -0.60 -16.22 3.78 -184.57 -0.70 -16.91 16 18 C -0.22 -6.33 10.74 -15.06 -0.16 -6.49 16 19 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -28.41 11.51 55.49 0.64 -27.78 16 22 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.15 3.71 6.89 -7.92 -0.05 3.66 16 27 C -0.14 -1.93 6.03 -25.07 -0.15 -2.08 16 28 N -0.56 -4.38 6.15 -6.54 -0.04 -4.42 16 29 H 0.41 1.76 8.96 -40.82 -0.37 1.39 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.40 2.43 8.51 -40.82 -0.35 2.08 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 43 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.04 0.86 7.95 -51.93 -0.41 0.45 16 45 H 0.08 2.21 7.13 -51.93 -0.37 1.84 16 46 H 0.08 0.86 7.96 -51.93 -0.41 0.44 16 47 H 0.09 1.19 7.81 -51.93 -0.41 0.79 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -40.06 390.17 -9.80 -49.86 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.34 Total: 0.27 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -2.53 Total: 4.66 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.48 Total: -62.79 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.31 Total: -15.77 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -40.06 -9.80 -49.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053836710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.900 kcal (2) G-P(sol) polarization free energy of solvation -40.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds