Wall clock time and date at job start Tue Mar 31 2020 18:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46927 * 2 1 4 4 C 1.34668 * 126.59259 * 84.97637 * 3 2 1 5 5 N 1.34127 * 108.02102 * 180.02562 * 4 3 2 6 6 C 1.30499 * 109.25339 * 359.97438 * 5 4 3 7 7 C 1.50705 * 125.64350 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47402 * 305.01936 * 7 6 5 9 9 O 1.21285 * 119.99783 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00147 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00051 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.97278 * 37.69112 * 11 10 8 13 13 C 1.55021 * 111.10305 * 273.54393 * 11 10 8 14 14 O 1.43911 * 105.18234 * 206.02787 * 13 11 10 15 15 C 1.42391 * 109.55584 * 24.29253 * 14 13 11 16 16 C 1.52707 * 116.14328 * 129.84680 * 15 14 13 17 17 N 1.47219 * 87.79334 * 90.70657 * 16 15 14 18 18 C 1.36931 * 135.97128 * 206.43699 * 17 16 15 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72306 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 C 1.47216 * 88.05150 * 26.69097 * 17 16 15 27 27 C 1.53659 * 108.53510 * 358.08998 * 15 14 13 28 28 N 1.35043 * 108.70486 * 0.26416 * 6 5 4 29 29 H 0.96993 * 126.39957 * 179.74018 * 28 6 5 30 30 H 1.08998 * 109.47149 * 300.00044 * 1 2 3 31 31 H 1.09000 * 109.46951 * 60.00104 * 1 2 3 32 32 H 1.09001 * 109.47025 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47149 * 239.99956 * 2 1 3 34 34 H 1.09000 * 109.46951 * 119.99896 * 2 1 3 35 35 H 1.08001 * 125.98882 * 0.03834 * 4 3 2 36 36 H 1.09004 * 109.46675 * 185.02087 * 7 6 5 37 37 H 1.08995 * 109.47417 * 65.02940 * 7 6 5 38 38 H 0.96996 * 120.00240 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.29717 * 87.10360 * 13 11 10 40 40 H 1.08999 * 110.30468 * 324.95775 * 13 11 10 41 41 H 1.08999 * 113.49372 * 335.97682 * 16 15 14 42 42 H 1.08994 * 113.55796 * 205.44429 * 16 15 14 43 43 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 44 44 H 1.09003 * 113.49350 * 88.04070 * 26 17 16 45 45 H 1.08998 * 113.49476 * 218.57645 * 26 17 16 46 46 H 1.09006 * 110.93065 * 97.29560 * 27 15 14 47 47 H 1.08997 * 110.93072 * 220.95444 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2106 2.2093 1.0771 5 7 2.6691 3.3957 0.6515 6 6 2.7822 3.3722 -0.6484 7 6 3.2652 4.5115 -1.5086 8 6 2.4339 5.7375 -1.2319 9 8 1.5377 5.6910 -0.4160 10 7 2.6862 6.8857 -1.8909 11 6 1.8783 8.0777 -1.6215 12 1 1.6312 8.1503 -0.5624 13 6 0.5983 8.0939 -2.4958 14 8 0.2482 9.4837 -2.6258 15 6 1.4088 10.2871 -2.4388 16 6 1.6748 11.3443 -3.5081 17 7 0.8834 12.2831 -2.6958 18 6 0.1338 13.4034 -2.9366 19 1 0.0314 13.7785 -3.9442 20 6 -0.4999 14.0534 -1.8863 21 7 -0.3756 13.5959 -0.6585 22 14 -1.5289 15.5772 -2.2158 23 1 -2.6349 15.2360 -3.1461 24 1 -2.0937 16.0789 -0.9374 25 1 -0.6755 16.6284 -2.8257 26 6 1.2564 11.4935 -1.5106 27 6 2.5953 9.3644 -2.1194 28 7 2.3898 2.1599 -1.0954 29 1 2.3674 1.8668 -2.0197 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0183 1.9344 2.1037 36 1 3.1710 4.2383 -2.5597 37 1 4.3100 4.7217 -1.2802 38 1 3.4027 6.9228 -2.5437 39 1 -0.2041 7.5464 -2.0015 40 1 0.8040 7.6624 -3.4754 41 1 1.2199 11.1124 -4.4711 42 1 2.7252 11.6225 -3.5939 43 1 -0.8181 14.0504 0.0754 44 1 2.1936 11.8116 -1.0539 45 1 0.4481 11.3877 -0.7870 46 1 3.1826 9.1612 -3.0150 47 1 3.2199 9.7908 -1.3345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053836710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:24 Heat of formation + Delta-G solvation = 9.317636 kcal Electronic energy + Delta-G solvation = -28153.046991 eV Core-core repulsion = 24144.715962 eV Total energy + Delta-G solvation = -4008.331029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.07341 -41.58799 -40.31752 -37.90277 -35.64411 -35.07459 -34.19095 -33.48571 -32.59333 -31.31446 -29.81101 -27.92053 -27.31472 -26.52048 -24.37352 -23.96402 -23.04514 -22.05334 -21.82237 -21.06278 -20.56637 -18.77878 -18.39315 -18.17463 -17.52708 -17.08590 -16.46864 -16.38737 -16.33725 -15.85021 -15.64815 -15.30875 -15.16179 -14.93053 -14.84285 -14.70347 -14.45475 -14.30432 -14.01118 -13.54746 -13.45019 -13.37914 -13.04182 -12.97121 -12.77356 -12.71279 -12.54426 -12.46198 -12.28983 -12.03452 -11.73478 -11.65468 -11.33472 -10.97013 -10.92703 -10.91995 -10.77757 -10.29515 -10.05235 -9.16760 -8.93336 -7.90360 -5.23493 1.02507 1.42622 1.47968 1.53849 1.66875 1.85710 2.20953 2.40127 2.47669 2.85284 3.29202 3.35310 3.37799 3.60720 3.63562 3.78189 3.90845 3.98593 4.08738 4.10057 4.18136 4.23494 4.42890 4.44452 4.60866 4.65822 4.68477 4.72621 4.75908 4.77046 4.86898 4.89898 4.93149 4.95364 5.03166 5.04903 5.15535 5.27768 5.34107 5.41574 5.45442 5.50067 5.82499 5.92740 6.32127 6.51836 6.64203 6.89375 7.21504 7.33926 7.59913 8.60362 9.27443 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027297 B = 0.001925 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.505990 B =14545.389544 C =14920.465804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.041 4.041 3 C -0.009 4.009 4 C -0.063 4.063 5 N -0.512 5.512 6 C 0.203 3.797 7 C -0.044 4.044 8 C 0.512 3.488 9 O -0.570 6.570 10 N -0.697 5.697 11 C 0.127 3.873 12 H 0.073 0.927 13 C 0.040 3.960 14 O -0.374 6.374 15 C 0.076 3.924 16 C 0.116 3.884 17 N -0.641 5.641 18 C -0.228 4.228 19 H 0.086 0.914 20 C -0.075 4.075 21 N -0.957 5.957 22 Si 0.984 3.016 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.271 1.271 26 C 0.143 3.857 27 C -0.122 4.122 28 N -0.550 5.550 29 H 0.433 0.567 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.425 0.575 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.247 0.753 44 H 0.042 0.958 45 H 0.027 0.973 46 H 0.127 0.873 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.057 -30.830 -6.726 34.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.126 4.126 4 C -0.210 4.210 5 N -0.231 5.231 6 C -0.062 4.062 7 C -0.085 4.085 8 C 0.298 3.702 9 O -0.447 6.447 10 N -0.353 5.353 11 C 0.020 3.980 12 H 0.092 0.908 13 C -0.038 4.038 14 O -0.292 6.292 15 C 0.035 3.965 16 C -0.009 4.009 17 N -0.367 5.367 18 C -0.356 4.356 19 H 0.104 0.896 20 C -0.267 4.267 21 N -0.606 5.606 22 Si 0.811 3.189 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.197 1.197 26 C 0.017 3.983 27 C -0.161 4.161 28 N -0.156 5.156 29 H 0.275 0.725 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.185 0.815 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.264 0.736 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.145 0.855 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.189 -29.820 -5.591 32.697 hybrid contribution -0.866 0.540 -0.448 1.114 sum 11.324 -29.280 -6.039 31.969 Atomic orbital electron populations 1.21771 0.94560 1.02745 1.01482 1.20095 0.95720 0.87148 1.05017 1.21654 1.06728 0.97485 0.86709 1.22379 1.08174 0.90530 0.99938 1.70158 1.19193 1.23366 1.10401 1.22700 1.04575 0.88086 0.90804 1.20076 1.01424 0.86014 1.00940 1.20926 0.84115 0.85147 0.79966 1.90812 1.33846 1.84869 1.35166 1.45534 1.36933 1.08723 1.44103 1.22290 0.90904 0.85397 0.99399 0.90840 1.23913 0.97375 0.82418 1.00049 1.88436 1.32071 1.16766 1.91957 1.23042 0.85280 0.90665 0.97536 1.22902 0.95928 0.87035 0.95060 1.45804 1.55108 1.30083 1.05709 1.19302 1.21398 1.01015 0.93866 0.89589 1.25733 1.02740 1.03079 0.95167 1.70041 1.48618 1.42736 0.99156 0.85075 0.78526 0.78912 0.76371 1.20377 1.22114 1.19664 1.22485 0.96937 0.87251 0.91626 1.23052 0.96477 0.92200 1.04330 1.43008 1.50482 1.11732 1.10362 0.72545 0.93546 0.93646 0.90128 0.89013 0.88293 0.81463 0.82604 0.83426 0.73582 0.91485 0.89425 0.93297 0.90535 0.94416 0.94084 0.95406 0.85508 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 71.98 0.71 -0.74 16 2 C -0.04 -0.35 6.49 29.85 0.19 -0.16 16 3 C -0.01 -0.14 6.49 40.95 0.27 0.12 16 4 C -0.06 -1.46 11.79 83.52 0.98 -0.47 16 5 N -0.51 -14.31 10.58 -188.13 -1.99 -16.30 16 6 C 0.20 3.93 6.96 138.13 0.96 4.89 16 7 C -0.04 -0.48 6.33 29.10 0.18 -0.29 16 8 C 0.51 10.73 7.82 87.66 0.69 11.42 16 9 O -0.57 -19.51 15.30 -3.04 -0.05 -19.56 16 10 N -0.70 -11.34 5.24 -435.24 -2.28 -13.62 16 11 C 0.13 3.26 3.37 46.54 0.16 3.42 16 12 H 0.07 2.44 7.74 -2.39 -0.02 2.42 16 13 C 0.04 1.21 7.49 72.67 0.54 1.76 16 14 O -0.37 -15.63 11.18 -148.98 -1.67 -17.30 16 15 C 0.08 2.90 1.75 -10.68 -0.02 2.88 16 16 C 0.12 4.66 8.20 83.39 0.68 5.35 16 17 N -0.64 -34.95 3.78 -738.92 -2.80 -37.75 16 18 C -0.23 -13.56 10.74 84.04 0.90 -12.66 16 19 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 20 C -0.07 -4.53 5.50 84.86 0.47 -4.06 16 21 N -0.96 -61.78 11.51 21.65 0.25 -61.53 16 22 Si 0.98 48.18 29.55 68.60 2.03 50.21 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 26 C 0.14 7.20 6.89 83.48 0.58 7.77 16 27 C -0.12 -2.95 6.03 31.67 0.19 -2.76 16 28 N -0.55 -7.35 6.15 -174.60 -1.07 -8.43 16 29 H 0.43 2.20 8.96 -92.71 -0.83 1.36 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.51 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 0.38 8.14 -2.39 -0.02 0.37 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.16 0.14 8.14 -2.38 -0.02 0.12 16 37 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.43 2.82 8.51 -92.71 -0.79 2.04 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.08 2.61 8.13 -2.39 -0.02 2.59 16 43 H 0.25 15.51 8.31 -92.70 -0.77 14.73 16 44 H 0.04 1.99 7.95 -2.39 -0.02 1.97 16 45 H 0.03 1.65 7.13 -2.39 -0.02 1.64 16 46 H 0.13 1.95 7.96 -2.38 -0.02 1.94 16 47 H 0.10 2.33 7.81 -2.39 -0.02 2.31 16 Total: -1.00 -96.24 390.17 -0.71 -96.95 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -0.62 Total: 10.86 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 7.49 Total: 16.46 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -7.89 Total: -137.62 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.71 Total: -36.86 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -96.24 -0.71 -96.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053836710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.265 kcal (2) G-P(sol) polarization free energy of solvation -96.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds