Wall clock time and date at job start Tue Mar 31 2020 18:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50700 * 109.46908 * 2 1 4 4 N 1.30454 * 125.98908 * 90.03051 * 3 2 1 5 5 N 1.39930 * 108.89548 * 179.97438 * 4 3 2 6 6 C 1.46502 * 125.75016 * 180.02562 * 5 4 3 7 7 C 1.34256 * 108.49495 * 359.97438 * 5 4 3 8 8 C 1.38037 * 107.41819 * 0.22989 * 7 5 4 9 9 C 1.47429 * 126.41888 * 179.73706 * 8 7 5 10 10 O 1.21599 * 120.00286 * 180.02562 * 9 8 7 11 11 N 1.34782 * 119.99787 * 0.02562 * 9 8 7 12 12 C 1.46501 * 120.00206 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.72784 * 34.29875 * 12 11 9 14 14 C 1.54466 * 110.82547 * 270.88496 * 12 11 9 15 15 O 1.43518 * 107.57621 * 220.41100 * 14 12 11 16 16 C 1.42548 * 109.63815 * 359.36469 * 15 14 12 17 17 C 1.52950 * 116.15881 * 253.34060 * 16 15 14 18 18 N 1.47780 * 85.80168 * 218.94042 * 17 16 15 19 19 C 1.36934 * 134.41099 * 203.94343 * 18 17 16 20 20 H 1.07998 * 119.99914 * 173.47702 * 19 18 17 21 21 C 1.38815 * 120.00049 * 353.47166 * 19 18 17 22 22 N 1.31619 * 119.99911 * 5.08557 * 21 19 18 23 23 Si 1.86796 * 120.00073 * 185.09092 * 21 19 18 24 24 H 1.48496 * 109.47539 * 94.99045 * 23 21 19 25 25 H 1.48510 * 109.46863 * 214.98660 * 23 21 19 26 26 H 1.48498 * 109.47095 * 334.98444 * 23 21 19 27 27 C 1.47772 * 91.17958 * 23.91574 * 18 17 16 28 28 C 1.54273 * 106.60648 * 22.89498 * 16 15 14 29 29 H 1.09009 * 109.47335 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47374 * 299.99351 * 1 2 3 31 31 H 1.08997 * 109.47347 * 59.99809 * 1 2 3 32 32 H 1.09004 * 109.47257 * 240.00115 * 2 1 3 33 33 H 1.08997 * 109.47347 * 120.00191 * 2 1 3 34 34 H 1.09008 * 109.46824 * 269.96754 * 6 5 4 35 35 H 1.08995 * 109.47231 * 29.96811 * 6 5 4 36 36 H 1.09006 * 109.47146 * 149.97469 * 6 5 4 37 37 H 1.08002 * 126.28968 * 179.97438 * 7 5 4 38 38 H 0.97005 * 119.99878 * 0.02562 * 11 9 8 39 39 H 1.08995 * 109.83018 * 339.92082 * 14 12 11 40 40 H 1.09003 * 109.82963 * 100.80618 * 14 12 11 41 41 H 1.08994 * 113.81936 * 333.15533 * 17 16 15 42 42 H 1.08997 * 113.82150 * 104.72649 * 17 16 15 43 43 H 0.96996 * 120.00634 * 179.97438 * 22 21 19 44 44 H 1.09003 * 113.82259 * 221.85287 * 27 18 17 45 45 H 1.09008 * 113.92712 * 90.31531 * 27 18 17 46 46 H 1.08992 * 111.33543 * 207.20906 * 28 16 15 47 47 H 1.09001 * 111.08648 * 82.88288 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2882 2.1434 1.0555 5 7 2.7343 3.4043 0.6442 6 6 3.1246 4.5047 1.5291 7 6 2.7455 3.4352 -0.6979 8 6 2.3048 2.2051 -1.1432 9 6 2.1494 1.7873 -2.5485 10 8 1.7490 0.6692 -2.8097 11 7 2.4512 2.6447 -3.5437 12 6 2.2973 2.2293 -4.9402 13 1 1.4470 1.5566 -5.0512 14 6 3.5922 1.5686 -5.4625 15 8 3.8022 2.0287 -6.8056 16 6 2.7461 2.9095 -7.1809 17 6 1.7222 2.3514 -8.1705 18 7 1.7371 3.6983 -8.7784 19 6 0.8528 4.4165 -9.5382 20 1 1.0620 5.4482 -9.7795 21 6 -0.3124 3.8186 -9.9983 22 7 -0.6166 2.5945 -9.6225 23 14 -1.4485 4.7513 -11.1510 24 1 -1.1304 4.3933 -12.5566 25 1 -2.8585 4.3904 -10.8553 26 1 -1.2602 6.2115 -10.9572 27 6 3.0873 3.9605 -8.2382 28 6 2.1494 3.4656 -5.8715 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2527 5.1210 1.7488 35 1 3.5263 4.0993 2.4577 36 1 3.8851 5.1128 1.0390 37 1 3.0407 4.2704 -1.3157 38 1 2.7710 3.5365 -3.3354 39 1 4.4349 1.8602 -4.8357 40 1 3.4832 0.4841 -5.4544 41 1 2.1180 1.5709 -8.8202 42 1 0.7688 2.0851 -7.7142 43 1 -1.4309 2.1767 -9.9436 44 1 3.2128 4.9656 -7.8355 45 1 3.8960 3.6656 -8.9071 46 1 1.1021 3.7397 -5.9979 47 1 2.7329 4.3088 -5.5016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053841983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:24 Heat of formation + Delta-G solvation = 55.188448 kcal Electronic energy + Delta-G solvation = -28899.504285 eV Core-core repulsion = 24893.162364 eV Total energy + Delta-G solvation = -4006.341921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71733 -40.09694 -38.79893 -36.23457 -35.03969 -34.33598 -32.12615 -32.08152 -31.12744 -29.62777 -28.06483 -27.15649 -25.77529 -24.92284 -24.09104 -22.82392 -22.00539 -21.49574 -20.36878 -19.74757 -18.71170 -17.95837 -16.75459 -16.52706 -16.05532 -16.02261 -15.44117 -15.10280 -14.91630 -14.66069 -14.49292 -14.36157 -14.18761 -13.72126 -13.53867 -13.27002 -13.21760 -12.99339 -12.84334 -12.58938 -12.21958 -11.92074 -11.65430 -11.61365 -11.38546 -11.28335 -11.09612 -10.93559 -10.91279 -10.81111 -10.71494 -10.30149 -9.99784 -9.81253 -9.66103 -9.54884 -9.11343 -8.84365 -8.79487 -8.72079 -6.90122 -5.79549 -3.11830 1.21680 1.96188 2.00653 3.14561 3.37738 3.38718 3.43481 3.46065 3.99799 4.24088 4.25266 4.49506 4.53700 4.65651 4.66529 4.88881 4.92719 5.04737 5.14675 5.16279 5.23636 5.25332 5.31039 5.36137 5.42873 5.43256 5.50289 5.55538 5.86853 5.96244 6.01819 6.03328 6.16339 6.16396 6.31920 6.32463 6.37510 6.44260 6.52892 6.61382 6.71818 7.05004 7.22034 7.28837 7.51003 7.53864 7.72628 7.94864 8.27844 9.02089 9.68140 10.56984 11.38055 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.002489 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.105479 B =11246.671651 C =11439.773955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C 0.138 3.862 4 N -0.302 5.302 5 N -0.363 5.363 6 C 0.097 3.903 7 C 0.098 3.902 8 C -0.284 4.284 9 C 0.593 3.407 10 O -0.534 6.534 11 N -0.717 5.717 12 C 0.115 3.885 13 H 0.109 0.891 14 C 0.046 3.954 15 O -0.369 6.369 16 C 0.055 3.945 17 C 0.160 3.840 18 N -0.605 5.605 19 C -0.224 4.224 20 H 0.082 0.918 21 C -0.005 4.005 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.129 3.871 28 C -0.121 4.121 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.183 0.817 38 H 0.396 0.604 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.098 0.902 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.546 2.661 23.294 24.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.030 4.030 4 N -0.123 5.123 5 N -0.140 5.140 6 C -0.044 4.044 7 C -0.053 4.053 8 C -0.299 4.299 9 C 0.381 3.619 10 O -0.411 6.411 11 N -0.369 5.369 12 C 0.010 3.990 13 H 0.127 0.873 14 C -0.033 4.033 15 O -0.287 6.287 16 C 0.015 3.985 17 C 0.034 3.966 18 N -0.333 5.333 19 C -0.352 4.352 20 H 0.099 0.901 21 C -0.202 4.202 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.003 3.997 28 C -0.159 4.159 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.200 0.800 38 H 0.230 0.770 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.117 0.883 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.194 2.013 24.193 25.622 hybrid contribution -0.486 1.185 -1.367 1.873 sum 7.708 3.198 22.826 24.303 Atomic orbital electron populations 1.21618 0.93885 1.02179 1.02005 1.20132 0.96604 0.87916 1.04099 1.22495 0.94924 0.96914 0.88644 1.77206 1.22145 0.90305 1.22643 1.48305 1.49352 1.11642 1.04737 1.21997 1.01502 0.86174 0.94746 1.23092 0.98080 0.98798 0.85339 1.20272 1.19548 0.95576 0.94533 1.17251 0.76679 0.84595 0.83384 1.90765 1.46243 1.20013 1.84086 1.45770 1.68641 1.16882 1.05595 1.22622 0.99168 0.97576 0.79662 0.87347 1.23454 0.96371 0.99119 0.84313 1.88309 1.47289 1.64502 1.28558 1.24245 0.88613 0.91769 0.93896 1.22501 0.95538 0.88525 0.90013 1.45708 1.11893 1.14070 1.61655 1.18957 0.98081 0.93677 1.24456 0.90062 1.24839 0.98575 0.96410 1.00407 1.69835 1.25805 1.13513 1.47061 0.86127 0.80029 0.78782 0.80981 1.21570 1.21687 1.20555 1.22545 0.89884 0.95284 0.92007 1.23004 1.03701 0.95906 0.93274 0.91812 0.93116 0.92012 0.87961 0.90738 0.90191 0.88878 0.89006 0.80015 0.76990 0.91865 0.91076 0.94514 0.90987 0.93496 0.93414 0.93917 0.88302 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.89 37.15 0.37 -1.09 16 2 C -0.05 -0.54 5.96 -27.89 -0.17 -0.70 16 3 C 0.14 1.67 6.52 -82.02 -0.53 1.13 16 4 N -0.30 -3.50 12.50 33.90 0.42 -3.08 16 5 N -0.36 -3.08 3.98 -67.60 -0.27 -3.35 16 6 C 0.10 0.37 11.44 59.85 0.68 1.05 16 7 C 0.10 0.80 10.99 -16.56 -0.18 0.62 16 8 C -0.28 -3.26 6.13 -105.07 -0.64 -3.91 16 9 C 0.59 7.91 7.81 -12.52 -0.10 7.81 16 10 O -0.53 -8.83 14.61 5.28 0.08 -8.76 16 11 N -0.72 -8.34 5.11 -52.86 -0.27 -8.61 16 12 C 0.11 1.68 3.33 -65.84 -0.22 1.46 16 13 H 0.11 1.83 7.62 -51.93 -0.40 1.43 16 14 C 0.05 0.70 7.58 37.93 0.29 0.98 16 15 O -0.37 -6.81 11.17 -35.23 -0.39 -7.20 16 16 C 0.06 1.07 1.48 -90.17 -0.13 0.93 16 17 C 0.16 3.85 6.89 -3.37 -0.02 3.83 16 18 N -0.60 -15.43 3.69 -183.19 -0.68 -16.11 16 19 C -0.22 -6.21 10.69 -15.06 -0.16 -6.37 16 20 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 22 N -0.92 -27.09 11.52 55.49 0.64 -26.45 16 23 Si 0.91 21.95 29.56 -169.99 -5.02 16.92 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.13 2.68 8.49 -3.38 -0.03 2.65 16 28 C -0.12 -1.91 6.05 -24.75 -0.15 -2.06 16 29 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.26 6.57 -51.93 -0.34 0.92 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.23 8.14 -51.92 -0.42 -0.20 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.18 0.72 7.46 -52.49 -0.39 0.33 16 38 H 0.40 3.33 7.45 -40.82 -0.30 3.02 16 39 H 0.06 0.85 8.02 -51.93 -0.42 0.44 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.07 1.87 7.36 -51.93 -0.38 1.49 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 45 H 0.04 0.90 8.14 -51.92 -0.42 0.47 16 46 H 0.10 1.76 8.05 -51.93 -0.42 1.35 16 47 H 0.07 0.99 7.98 -51.93 -0.41 0.58 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -35.36 388.40 -7.99 -43.36 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.26 Total: 1.32 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.10 Total: 6.09 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.15 Total: -57.59 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.32 Total: -15.96 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.36 -7.99 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053841983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.544 kcal (2) G-P(sol) polarization free energy of solvation -35.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds