Wall clock time and date at job start Tue Mar 31 2020 18:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50700 * 109.46908 * 2 1 4 4 N 1.30454 * 125.98908 * 90.03051 * 3 2 1 5 5 N 1.39930 * 108.89548 * 179.97438 * 4 3 2 6 6 C 1.46502 * 125.75016 * 180.02562 * 5 4 3 7 7 C 1.34256 * 108.49495 * 359.97438 * 5 4 3 8 8 C 1.38037 * 107.41819 * 0.22989 * 7 5 4 9 9 C 1.47429 * 126.41888 * 179.73706 * 8 7 5 10 10 O 1.21599 * 120.00286 * 180.02562 * 9 8 7 11 11 N 1.34782 * 119.99787 * 0.02562 * 9 8 7 12 12 C 1.46501 * 120.00206 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.72784 * 34.29875 * 12 11 9 14 14 C 1.54466 * 110.82547 * 270.88496 * 12 11 9 15 15 O 1.43518 * 107.57621 * 220.41100 * 14 12 11 16 16 C 1.42548 * 109.63815 * 359.36469 * 15 14 12 17 17 C 1.52950 * 116.15881 * 253.34060 * 16 15 14 18 18 N 1.47780 * 85.80168 * 218.94042 * 17 16 15 19 19 C 1.36934 * 134.41099 * 203.94343 * 18 17 16 20 20 H 1.07998 * 119.99914 * 173.47702 * 19 18 17 21 21 C 1.38815 * 120.00049 * 353.47166 * 19 18 17 22 22 N 1.31619 * 119.99911 * 5.08557 * 21 19 18 23 23 Si 1.86796 * 120.00073 * 185.09092 * 21 19 18 24 24 H 1.48496 * 109.47539 * 94.99045 * 23 21 19 25 25 H 1.48510 * 109.46863 * 214.98660 * 23 21 19 26 26 H 1.48498 * 109.47095 * 334.98444 * 23 21 19 27 27 C 1.47772 * 91.17958 * 23.91574 * 18 17 16 28 28 C 1.54273 * 106.60648 * 22.89498 * 16 15 14 29 29 H 1.09009 * 109.47335 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47374 * 299.99351 * 1 2 3 31 31 H 1.08997 * 109.47347 * 59.99809 * 1 2 3 32 32 H 1.09004 * 109.47257 * 240.00115 * 2 1 3 33 33 H 1.08997 * 109.47347 * 120.00191 * 2 1 3 34 34 H 1.09008 * 109.46824 * 269.96754 * 6 5 4 35 35 H 1.08995 * 109.47231 * 29.96811 * 6 5 4 36 36 H 1.09006 * 109.47146 * 149.97469 * 6 5 4 37 37 H 1.08002 * 126.28968 * 179.97438 * 7 5 4 38 38 H 0.97005 * 119.99878 * 0.02562 * 11 9 8 39 39 H 1.08995 * 109.83018 * 339.92082 * 14 12 11 40 40 H 1.09003 * 109.82963 * 100.80618 * 14 12 11 41 41 H 1.08994 * 113.81936 * 333.15533 * 17 16 15 42 42 H 1.08997 * 113.82150 * 104.72649 * 17 16 15 43 43 H 0.96996 * 120.00634 * 179.97438 * 22 21 19 44 44 H 1.09003 * 113.82259 * 221.85287 * 27 18 17 45 45 H 1.09008 * 113.92712 * 90.31531 * 27 18 17 46 46 H 1.08992 * 111.33543 * 207.20906 * 28 16 15 47 47 H 1.09001 * 111.08648 * 82.88288 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2882 2.1434 1.0555 5 7 2.7343 3.4043 0.6442 6 6 3.1246 4.5047 1.5291 7 6 2.7455 3.4352 -0.6979 8 6 2.3048 2.2051 -1.1432 9 6 2.1494 1.7873 -2.5485 10 8 1.7490 0.6692 -2.8097 11 7 2.4512 2.6447 -3.5437 12 6 2.2973 2.2293 -4.9402 13 1 1.4470 1.5566 -5.0512 14 6 3.5922 1.5686 -5.4625 15 8 3.8022 2.0287 -6.8056 16 6 2.7461 2.9095 -7.1809 17 6 1.7222 2.3514 -8.1705 18 7 1.7371 3.6983 -8.7784 19 6 0.8528 4.4165 -9.5382 20 1 1.0620 5.4482 -9.7795 21 6 -0.3124 3.8186 -9.9983 22 7 -0.6166 2.5945 -9.6225 23 14 -1.4485 4.7513 -11.1510 24 1 -1.1304 4.3933 -12.5566 25 1 -2.8585 4.3904 -10.8553 26 1 -1.2602 6.2115 -10.9572 27 6 3.0873 3.9605 -8.2382 28 6 2.1494 3.4656 -5.8715 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2527 5.1210 1.7488 35 1 3.5263 4.0993 2.4577 36 1 3.8851 5.1128 1.0390 37 1 3.0407 4.2704 -1.3157 38 1 2.7710 3.5365 -3.3354 39 1 4.4349 1.8602 -4.8357 40 1 3.4832 0.4841 -5.4544 41 1 2.1180 1.5709 -8.8202 42 1 0.7688 2.0851 -7.7142 43 1 -1.4309 2.1767 -9.9436 44 1 3.2128 4.9656 -7.8355 45 1 3.8960 3.6656 -8.9071 46 1 1.1021 3.7397 -5.9979 47 1 2.7329 4.3088 -5.5016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053841983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:23 Heat of formation + Delta-G solvation = 29.366647 kcal Electronic energy + Delta-G solvation = -28900.624003 eV Core-core repulsion = 24893.162364 eV Total energy + Delta-G solvation = -4007.461639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.46499 -41.50490 -39.98061 -37.85143 -35.94478 -35.37399 -34.13162 -32.86688 -32.08305 -30.74548 -29.72171 -27.77553 -27.43899 -26.70922 -24.97982 -23.89920 -23.58665 -22.52001 -21.41531 -20.57154 -20.30501 -18.82235 -18.69376 -17.68051 -17.10397 -16.94731 -16.68098 -16.47717 -16.36320 -15.82005 -15.56866 -15.47931 -15.40076 -15.07981 -14.67892 -14.37563 -14.21514 -14.03368 -13.77369 -13.64344 -13.48718 -13.34757 -12.89554 -12.85602 -12.81917 -12.65200 -12.56850 -12.45028 -12.33911 -12.09552 -11.95417 -11.79643 -11.73610 -11.43603 -10.91052 -10.82354 -10.38556 -10.32109 -10.16153 -9.61847 -8.95522 -7.91973 -5.26170 0.53453 1.09264 1.46612 1.46924 1.49216 1.57935 2.11969 2.42543 2.45513 2.88684 3.22251 3.34191 3.36892 3.57806 3.71061 3.73805 3.79503 4.01034 4.06785 4.10876 4.22453 4.28332 4.40574 4.46448 4.46771 4.63327 4.68383 4.70818 4.73874 4.75278 4.78917 4.86238 4.93792 4.97032 5.03536 5.07428 5.16152 5.18378 5.22331 5.28900 5.45811 5.49846 5.52030 5.86970 5.91849 6.19831 6.50397 6.68066 6.88837 7.32230 7.58892 8.53407 9.25836 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.002489 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.105479 B =11246.671651 C =11439.773955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C 0.120 3.880 4 N -0.329 5.329 5 N -0.358 5.358 6 C 0.086 3.914 7 C 0.126 3.874 8 C -0.318 4.318 9 C 0.593 3.407 10 O -0.577 6.577 11 N -0.700 5.700 12 C 0.128 3.872 13 H 0.077 0.923 14 C 0.045 3.955 15 O -0.379 6.379 16 C 0.077 3.923 17 C 0.152 3.848 18 N -0.629 5.629 19 C -0.231 4.231 20 H 0.093 0.907 21 C -0.067 4.067 22 N -0.953 5.953 23 Si 0.979 3.021 24 H -0.291 1.291 25 H -0.296 1.296 26 H -0.260 1.260 27 C 0.131 3.869 28 C -0.107 4.107 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.231 0.769 38 H 0.417 0.583 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.007 0.993 42 H 0.042 0.958 43 H 0.248 0.752 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.077 0.923 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.291 6.046 25.012 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.046 4.046 4 N -0.150 5.150 5 N -0.135 5.135 6 C -0.053 4.053 7 C -0.028 4.028 8 C -0.333 4.333 9 C 0.383 3.617 10 O -0.457 6.457 11 N -0.353 5.353 12 C 0.022 3.978 13 H 0.095 0.905 14 C -0.033 4.033 15 O -0.297 6.297 16 C 0.036 3.964 17 C 0.026 3.974 18 N -0.358 5.358 19 C -0.359 4.359 20 H 0.111 0.889 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.807 3.193 24 H -0.218 1.218 25 H -0.223 1.223 26 H -0.185 1.185 27 C 0.006 3.994 28 C -0.145 4.145 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.145 0.855 37 H 0.247 0.753 38 H 0.255 0.745 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.025 0.975 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.991 5.460 25.959 28.346 hybrid contribution -0.938 0.150 -1.815 2.048 sum 9.053 5.610 24.144 26.389 Atomic orbital electron populations 1.21548 0.93763 1.02650 1.01007 1.20077 0.96711 0.88280 1.03678 1.22603 0.95450 0.97273 0.89323 1.77137 1.23103 0.91928 1.22875 1.48719 1.47756 1.11377 1.05626 1.22438 1.03077 0.85155 0.94657 1.23709 0.95118 0.98470 0.85474 1.20175 1.22629 0.97422 0.93092 1.17560 0.75765 0.84061 0.84337 1.90750 1.48199 1.21983 1.84758 1.45472 1.68340 1.17687 1.03795 1.22200 0.97823 0.96527 0.81278 0.90487 1.23600 0.97692 0.98780 0.83198 1.88292 1.46412 1.64479 1.30480 1.23777 0.87371 0.90702 0.94553 1.22388 0.95770 0.87919 0.91287 1.46014 1.13839 1.14292 1.61617 1.19418 0.98351 0.94421 1.23753 0.88934 1.25717 1.00557 0.97437 1.02352 1.70044 1.26159 1.15359 1.48597 0.85047 0.77382 0.78497 0.78346 1.21796 1.22320 1.18460 1.22684 0.87489 0.97274 0.91935 1.22893 1.02797 0.97372 0.91457 0.90672 0.92618 0.94248 0.89776 0.89613 0.88916 0.88766 0.85509 0.75251 0.74536 0.88814 0.91952 0.97539 0.93963 0.94284 0.90185 0.93885 0.90454 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.89 71.98 0.71 -2.17 16 2 C -0.05 -1.11 5.96 29.84 0.18 -0.93 16 3 C 0.12 2.86 6.52 43.52 0.28 3.15 16 4 N -0.33 -7.17 12.50 -46.67 -0.58 -7.75 16 5 N -0.36 -4.93 3.98 -367.77 -1.46 -6.39 16 6 C 0.09 0.31 11.44 127.77 1.46 1.77 16 7 C 0.13 1.56 10.99 84.27 0.93 2.49 16 8 C -0.32 -6.83 6.13 -20.15 -0.12 -6.95 16 9 C 0.59 15.41 7.81 86.66 0.68 16.09 16 10 O -0.58 -19.82 14.61 -4.03 -0.06 -19.88 16 11 N -0.70 -14.70 5.11 -439.39 -2.25 -16.95 16 12 C 0.13 3.63 3.33 46.34 0.15 3.78 16 13 H 0.08 2.72 7.62 -2.39 -0.02 2.70 16 14 C 0.05 1.31 7.58 72.48 0.55 1.86 16 15 O -0.38 -13.55 11.17 -148.98 -1.66 -15.22 16 16 C 0.08 2.91 1.48 -10.35 -0.02 2.90 16 17 C 0.15 7.66 6.89 86.12 0.59 8.25 16 18 N -0.63 -32.31 3.69 -739.62 -2.73 -35.03 16 19 C -0.23 -12.81 10.69 84.03 0.90 -11.91 16 20 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 21 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 22 N -0.95 -58.59 11.52 21.65 0.25 -58.34 16 23 Si 0.98 45.57 29.56 68.60 2.03 47.60 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 27 C 0.13 5.23 8.49 86.11 0.73 5.97 16 28 C -0.11 -3.19 6.05 31.88 0.19 -2.99 16 29 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 30 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 2.22 6.57 -2.39 -0.02 2.21 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 35 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.13 -0.39 8.14 -2.38 -0.02 -0.41 16 37 H 0.23 0.37 7.46 -2.91 -0.02 0.35 16 38 H 0.42 5.16 7.45 -92.70 -0.69 4.47 16 39 H 0.09 2.22 8.02 -2.39 -0.02 2.20 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.04 2.34 7.36 -2.39 -0.02 2.32 16 43 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 45 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.08 2.71 8.05 -2.39 -0.02 2.69 16 47 H 0.12 2.53 7.98 -2.39 -0.02 2.51 16 Total: -1.00 -81.83 388.40 1.51 -80.31 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.29 Total: 13.74 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.69 Total: 17.90 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -6.77 Total: -124.46 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.72 Total: -35.10 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -81.83 1.51 -80.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053841983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.680 kcal (2) G-P(sol) polarization free energy of solvation -81.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds