Wall clock time and date at job start Tue Mar 31 2020 19:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47119 * 2 1 4 4 C 1.50699 * 109.46951 * 119.99929 * 2 1 3 5 5 N 1.30452 * 125.98983 * 300.14118 * 4 2 1 6 6 N 1.39934 * 108.90003 * 180.26362 * 5 4 2 7 7 H 0.97000 * 125.75542 * 179.77513 * 6 5 4 8 8 C 1.34264 * 108.49005 * 359.75318 * 6 5 4 9 9 C 1.38045 * 107.41785 * 0.02562 * 8 6 5 10 10 C 1.47431 * 126.41627 * 179.97438 * 9 8 6 11 11 O 1.21606 * 120.00075 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99788 * 0.02562 * 10 9 8 13 13 C 1.46494 * 119.99838 * 180.27746 * 12 10 9 14 14 H 1.08997 * 110.45629 * 327.32938 * 13 12 10 15 15 C 1.54547 * 110.51122 * 90.07674 * 13 12 10 16 16 O 1.44634 * 105.03501 * 95.01468 * 15 13 12 17 17 C 1.43247 * 105.22209 * 39.02985 * 16 15 13 18 18 C 1.52881 * 115.83851 * 90.92517 * 17 16 15 19 19 N 1.47783 * 85.78393 * 94.51195 * 18 17 16 20 20 C 1.36937 * 134.39883 * 203.85962 * 19 18 17 21 21 H 1.08002 * 119.99877 * 173.53865 * 20 19 18 22 22 C 1.38814 * 120.00433 * 353.52799 * 20 19 18 23 23 N 1.31617 * 119.99747 * 5.10237 * 22 20 19 24 24 Si 1.86800 * 120.00186 * 185.09312 * 22 20 19 25 25 H 1.48500 * 109.47139 * 94.99011 * 24 22 20 26 26 H 1.48493 * 109.47254 * 214.99299 * 24 22 20 27 27 H 1.48502 * 109.47086 * 334.99489 * 24 22 20 28 28 C 1.47778 * 91.19465 * 23.87390 * 19 18 17 29 29 C 1.53467 * 106.25965 * 321.06413 * 17 16 15 30 30 H 1.09003 * 109.47034 * 300.00006 * 1 2 3 31 31 H 1.08995 * 109.46732 * 60.00161 * 1 2 3 32 32 H 1.08994 * 109.47133 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47267 * 239.99590 * 2 1 3 34 34 H 1.09007 * 109.47385 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47122 * 299.99462 * 3 2 1 36 36 H 1.08997 * 109.47386 * 59.99663 * 3 2 1 37 37 H 1.07998 * 126.29280 * 180.02562 * 8 6 5 38 38 H 0.97002 * 119.99884 * 0.02562 * 12 10 9 39 39 H 1.09000 * 110.32874 * 213.91093 * 15 13 12 40 40 H 1.09004 * 110.32375 * 336.12832 * 15 13 12 41 41 H 1.09000 * 113.82629 * 208.72678 * 18 17 16 42 42 H 1.09004 * 113.82235 * 340.29365 * 18 17 16 43 43 H 0.97000 * 120.00286 * 179.97438 * 23 22 20 44 44 H 1.08997 * 113.82160 * 221.91121 * 28 19 18 45 45 H 1.08996 * 113.82168 * 90.34313 * 28 19 18 46 46 H 1.09007 * 110.57763 * 264.15217 * 29 17 16 47 47 H 1.09000 * 110.57274 * 141.27514 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7881 -0.3696 2.4658 6 7 2.4336 -1.2701 3.3205 7 1 2.4175 -1.2423 4.2900 8 6 3.0785 -2.1795 2.5724 9 6 2.8485 -1.8636 1.2484 10 6 3.3624 -2.5904 0.0731 11 8 3.0858 -2.2074 -1.0474 12 7 4.1387 -3.6793 0.2407 13 6 4.6544 -4.3979 -0.9271 14 1 3.9426 -4.3464 -1.7510 15 6 6.0243 -3.8242 -1.3545 16 8 7.0035 -4.6710 -0.7095 17 6 6.4711 -5.9978 -0.7998 18 6 6.8830 -6.7983 -2.0355 19 7 7.9590 -7.3494 -1.1854 20 6 9.1854 -7.9060 -1.4329 21 1 9.8453 -8.1453 -0.6122 22 6 9.5803 -8.1629 -2.7387 23 7 8.8207 -7.7804 -3.7432 24 14 11.1899 -9.0510 -3.0701 25 1 10.9284 -10.5031 -3.2388 26 1 11.8068 -8.5120 -4.3086 27 1 12.1140 -8.8442 -1.9262 28 6 7.1826 -7.0601 0.0383 29 6 4.9597 -5.8712 -0.5658 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8899 37 1 3.6688 -3.0063 2.9390 38 1 4.3590 -3.9850 1.1345 39 1 6.1347 -3.8748 -2.4378 40 1 6.1279 -2.7952 -1.0101 41 1 6.1455 -7.5380 -2.3469 42 1 7.2444 -6.1821 -2.8589 43 1 9.0968 -7.9595 -4.6557 44 1 7.7805 -6.6508 0.8525 45 1 6.5355 -7.8789 0.3529 46 1 4.7158 -6.0681 0.4782 47 1 4.4125 -6.5479 -1.2221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053857208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:19 Heat of formation + Delta-G solvation = 47.491334 kcal Electronic energy + Delta-G solvation = -28886.417763 eV Core-core repulsion = 24879.742070 eV Total energy + Delta-G solvation = -4006.675693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.77380 -40.17002 -38.80847 -36.19842 -35.75521 -34.23216 -32.08631 -31.42936 -30.96594 -29.73884 -27.97400 -27.28407 -25.86490 -24.91277 -23.74097 -23.52461 -22.03103 -21.07686 -20.28868 -19.35765 -18.97018 -18.68050 -16.78113 -16.66277 -16.24951 -15.49362 -15.34758 -15.11549 -14.93426 -14.81193 -14.62887 -14.34200 -14.03354 -13.81493 -13.41347 -13.33031 -13.21751 -12.96339 -12.70211 -12.33856 -11.87354 -11.67699 -11.53352 -11.48481 -11.39418 -11.24361 -11.21403 -11.09376 -10.98933 -10.85359 -10.51991 -10.33855 -9.84395 -9.78067 -9.71787 -9.51659 -9.29644 -9.09252 -8.79610 -8.67757 -6.85690 -5.75157 -3.06181 1.18972 1.90794 2.35101 3.15169 3.32470 3.41308 3.46054 3.48613 4.12499 4.27309 4.29500 4.48314 4.66518 4.73618 4.89298 5.03118 5.04566 5.08324 5.18495 5.20001 5.25960 5.36495 5.38532 5.49710 5.51030 5.64847 5.68638 5.71860 5.83987 5.88425 5.99875 6.03772 6.06921 6.08145 6.08503 6.29193 6.33860 6.48157 6.52803 6.61070 6.74903 6.97293 7.20460 7.21277 7.48574 7.52051 7.68765 7.99803 8.22550 9.06426 9.72852 10.60415 11.42755 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028283 B = 0.002241 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.768872 B =12492.039876 C =12944.414787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 C -0.140 4.140 4 C 0.145 3.855 5 N -0.296 5.296 6 N -0.462 5.462 7 H 0.444 0.556 8 C 0.105 3.895 9 C -0.286 4.286 10 C 0.593 3.407 11 O -0.540 6.540 12 N -0.715 5.715 13 C 0.114 3.886 14 H 0.105 0.895 15 C 0.038 3.962 16 O -0.338 6.338 17 C 0.055 3.945 18 C 0.155 3.845 19 N -0.605 5.605 20 C -0.221 4.221 21 H 0.080 0.920 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.130 3.870 29 C -0.145 4.145 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.119 0.881 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.186 0.814 38 H 0.397 0.603 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.254 0.746 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.078 0.922 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.069 13.465 13.419 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C -0.198 4.198 4 C -0.023 4.023 5 N -0.117 5.117 6 N -0.166 5.166 7 H 0.288 0.712 8 C -0.048 4.048 9 C -0.301 4.301 10 C 0.381 3.619 11 O -0.418 6.418 12 N -0.366 5.366 13 C 0.010 3.990 14 H 0.123 0.877 15 C -0.040 4.040 16 O -0.256 6.256 17 C 0.013 3.987 18 C 0.029 3.971 19 N -0.331 5.331 20 C -0.348 4.348 21 H 0.098 0.902 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.004 3.996 29 C -0.184 4.184 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.203 0.797 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.370 14.504 13.264 26.230 hybrid contribution 1.304 -1.507 0.304 2.016 sum -16.065 12.998 13.568 24.721 Atomic orbital electron populations 1.21779 0.93884 1.01985 1.02070 1.20016 0.95999 0.95797 0.93551 1.21785 1.01243 0.94679 1.02067 1.22441 0.93660 0.92753 0.93458 1.77143 1.19951 1.14154 1.00482 1.46136 1.39100 1.21755 1.09635 0.71170 1.23182 0.95684 0.94620 0.91327 1.20325 1.13333 1.03770 0.92637 1.17256 0.77447 0.79521 0.87694 1.90712 1.59326 1.66785 1.24972 1.45943 1.51658 1.29323 1.09715 1.22432 0.96497 0.91258 0.88853 0.87734 1.23817 0.86715 0.95250 0.98254 1.89008 1.42852 1.16042 1.77746 1.23799 0.88932 0.84859 1.01068 1.22550 0.88759 0.92522 0.93274 1.45827 1.14413 1.72191 1.00706 1.18992 0.90231 1.33275 0.92340 0.90204 1.24806 0.98857 1.01333 0.95403 1.69826 1.38250 1.50557 0.98023 0.86119 0.82800 0.79466 0.77531 1.21666 1.21701 1.20567 1.22502 0.92634 0.92316 0.92182 1.23067 0.98040 0.94702 1.02632 0.92464 0.91879 0.92687 0.86281 0.92616 0.91862 0.92466 0.79672 0.76852 0.91215 0.89485 0.94493 0.90792 0.93644 0.93114 0.93592 0.90378 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 2 C -0.03 -0.35 3.26 -91.77 -0.30 -0.65 16 3 C -0.14 -1.29 9.17 37.16 0.34 -0.95 16 4 C 0.15 1.61 5.77 -82.02 -0.47 1.14 16 5 N -0.30 -3.03 12.63 33.90 0.43 -2.60 16 6 N -0.46 -3.15 7.29 30.85 0.22 -2.92 16 7 H 0.44 1.42 8.96 -182.72 -1.64 -0.22 16 8 C 0.10 0.72 11.52 -16.56 -0.19 0.53 16 9 C -0.29 -3.00 6.13 -105.06 -0.64 -3.64 16 10 C 0.59 7.33 7.81 -12.52 -0.10 7.23 16 11 O -0.54 -8.31 14.21 5.27 0.07 -8.24 16 12 N -0.72 -7.75 5.07 -53.21 -0.27 -8.02 16 13 C 0.11 1.50 3.49 -66.21 -0.23 1.27 16 14 H 0.10 1.42 7.56 -51.93 -0.39 1.03 16 15 C 0.04 0.59 7.37 37.97 0.28 0.87 16 16 O -0.34 -6.53 11.44 -35.23 -0.40 -6.94 16 17 C 0.05 1.01 1.28 -90.66 -0.12 0.89 16 18 C 0.15 3.61 6.90 -3.40 -0.02 3.59 16 19 N -0.61 -15.70 3.70 -183.62 -0.68 -16.38 16 20 C -0.22 -6.30 10.69 -15.06 -0.16 -6.46 16 21 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.59 11.52 55.49 0.64 -26.96 16 24 Si 0.91 22.39 29.56 -169.99 -5.02 17.37 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.13 2.61 8.47 -3.41 -0.03 2.58 16 29 C -0.15 -1.94 6.25 -25.57 -0.16 -2.10 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.12 1.47 5.60 -51.93 -0.29 1.17 16 34 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.19 0.52 7.46 -52.49 -0.39 0.13 16 38 H 0.40 3.25 7.31 -40.82 -0.30 2.95 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 41 H 0.04 0.86 7.96 -51.93 -0.41 0.44 16 42 H 0.07 1.95 7.39 -51.93 -0.38 1.57 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 47 H 0.09 1.16 7.83 -51.93 -0.41 0.75 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -36.22 384.78 -9.15 -45.37 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.38 Total: 0.44 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -1.56 Total: 3.07 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.34 Total: -56.88 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.33 Total: -15.17 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.22 -9.15 -45.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053857208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.864 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds