Wall clock time and date at job start Tue Mar 31 2020 19:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47119 * 2 1 4 4 C 1.50699 * 109.46951 * 119.99929 * 2 1 3 5 5 N 1.30452 * 125.98983 * 300.14118 * 4 2 1 6 6 N 1.39934 * 108.90003 * 180.26362 * 5 4 2 7 7 H 0.97000 * 125.75542 * 179.77513 * 6 5 4 8 8 C 1.34264 * 108.49005 * 359.75318 * 6 5 4 9 9 C 1.38045 * 107.41785 * 0.02562 * 8 6 5 10 10 C 1.47431 * 126.41627 * 179.97438 * 9 8 6 11 11 O 1.21606 * 120.00075 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99788 * 0.02562 * 10 9 8 13 13 C 1.46494 * 119.99838 * 180.27746 * 12 10 9 14 14 H 1.08997 * 110.45629 * 327.32938 * 13 12 10 15 15 C 1.54547 * 110.51122 * 90.07674 * 13 12 10 16 16 O 1.44634 * 105.03501 * 95.01468 * 15 13 12 17 17 C 1.43247 * 105.22209 * 39.02985 * 16 15 13 18 18 C 1.52881 * 115.83851 * 90.92517 * 17 16 15 19 19 N 1.47783 * 85.78393 * 94.51195 * 18 17 16 20 20 C 1.36937 * 134.39883 * 203.85962 * 19 18 17 21 21 H 1.08002 * 119.99877 * 173.53865 * 20 19 18 22 22 C 1.38814 * 120.00433 * 353.52799 * 20 19 18 23 23 N 1.31617 * 119.99747 * 5.10237 * 22 20 19 24 24 Si 1.86800 * 120.00186 * 185.09312 * 22 20 19 25 25 H 1.48500 * 109.47139 * 94.99011 * 24 22 20 26 26 H 1.48493 * 109.47254 * 214.99299 * 24 22 20 27 27 H 1.48502 * 109.47086 * 334.99489 * 24 22 20 28 28 C 1.47778 * 91.19465 * 23.87390 * 19 18 17 29 29 C 1.53467 * 106.25965 * 321.06413 * 17 16 15 30 30 H 1.09003 * 109.47034 * 300.00006 * 1 2 3 31 31 H 1.08995 * 109.46732 * 60.00161 * 1 2 3 32 32 H 1.08994 * 109.47133 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47267 * 239.99590 * 2 1 3 34 34 H 1.09007 * 109.47385 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47122 * 299.99462 * 3 2 1 36 36 H 1.08997 * 109.47386 * 59.99663 * 3 2 1 37 37 H 1.07998 * 126.29280 * 180.02562 * 8 6 5 38 38 H 0.97002 * 119.99884 * 0.02562 * 12 10 9 39 39 H 1.09000 * 110.32874 * 213.91093 * 15 13 12 40 40 H 1.09004 * 110.32375 * 336.12832 * 15 13 12 41 41 H 1.09000 * 113.82629 * 208.72678 * 18 17 16 42 42 H 1.09004 * 113.82235 * 340.29365 * 18 17 16 43 43 H 0.97000 * 120.00286 * 179.97438 * 23 22 20 44 44 H 1.08997 * 113.82160 * 221.91121 * 28 19 18 45 45 H 1.08996 * 113.82168 * 90.34313 * 28 19 18 46 46 H 1.09007 * 110.57763 * 264.15217 * 29 17 16 47 47 H 1.09000 * 110.57274 * 141.27514 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7881 -0.3696 2.4658 6 7 2.4336 -1.2701 3.3205 7 1 2.4175 -1.2423 4.2900 8 6 3.0785 -2.1795 2.5724 9 6 2.8485 -1.8636 1.2484 10 6 3.3624 -2.5904 0.0731 11 8 3.0858 -2.2074 -1.0474 12 7 4.1387 -3.6793 0.2407 13 6 4.6544 -4.3979 -0.9271 14 1 3.9426 -4.3464 -1.7510 15 6 6.0243 -3.8242 -1.3545 16 8 7.0035 -4.6710 -0.7095 17 6 6.4711 -5.9978 -0.7998 18 6 6.8830 -6.7983 -2.0355 19 7 7.9590 -7.3494 -1.1854 20 6 9.1854 -7.9060 -1.4329 21 1 9.8453 -8.1453 -0.6122 22 6 9.5803 -8.1629 -2.7387 23 7 8.8207 -7.7804 -3.7432 24 14 11.1899 -9.0510 -3.0701 25 1 10.9284 -10.5031 -3.2388 26 1 11.8068 -8.5120 -4.3086 27 1 12.1140 -8.8442 -1.9262 28 6 7.1826 -7.0601 0.0383 29 6 4.9597 -5.8712 -0.5658 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8899 37 1 3.6688 -3.0063 2.9390 38 1 4.3590 -3.9850 1.1345 39 1 6.1347 -3.8748 -2.4378 40 1 6.1279 -2.7952 -1.0101 41 1 6.1455 -7.5380 -2.3469 42 1 7.2444 -6.1821 -2.8589 43 1 9.0968 -7.9595 -4.6557 44 1 7.7805 -6.6508 0.8525 45 1 6.5355 -7.8789 0.3529 46 1 4.7158 -6.0681 0.4782 47 1 4.4125 -6.5479 -1.2221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053857208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:18 Heat of formation + Delta-G solvation = 20.114533 kcal Electronic energy + Delta-G solvation = -28887.604911 eV Core-core repulsion = 24879.742070 eV Total energy + Delta-G solvation = -4007.862840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.46331 -41.50059 -39.91559 -37.68964 -36.57155 -35.36665 -34.12171 -32.38412 -31.67321 -30.82377 -29.54882 -28.00525 -27.54157 -26.60929 -24.62475 -24.29442 -23.68287 -22.18081 -21.20655 -20.50682 -20.06895 -19.40049 -18.70073 -17.64411 -17.31620 -17.03138 -16.68966 -16.26411 -15.94672 -15.87774 -15.65894 -15.48295 -15.15545 -15.04938 -14.86198 -14.50849 -14.39379 -14.03989 -13.91840 -13.29055 -13.16479 -13.02714 -12.96145 -12.82552 -12.65899 -12.50012 -12.36949 -12.27675 -12.13859 -12.07165 -11.89011 -11.74392 -11.66992 -11.24711 -10.90823 -10.67835 -10.60708 -10.50693 -10.04914 -9.69647 -8.89558 -7.90339 -5.21985 0.57570 1.12345 1.44829 1.47003 1.55883 1.82775 2.25259 2.46195 2.48263 2.89033 3.28707 3.43811 3.47709 3.58916 3.72228 3.77498 3.84920 4.09513 4.13323 4.19221 4.28618 4.38004 4.41665 4.48814 4.63653 4.67191 4.73497 4.77469 4.80963 4.87753 4.92185 4.96860 4.98072 4.99235 5.00630 5.13563 5.22613 5.29778 5.33025 5.35310 5.51234 5.53154 5.59866 5.93901 6.15433 6.30622 6.51608 6.71871 6.92614 7.35498 7.61835 8.56920 9.27422 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.028283 B = 0.002241 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.768872 B =12492.039876 C =12944.414787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.038 4.038 3 C -0.134 4.134 4 C 0.130 3.870 5 N -0.318 5.318 6 N -0.448 5.448 7 H 0.461 0.539 8 C 0.137 3.863 9 C -0.322 4.322 10 C 0.594 3.406 11 O -0.579 6.579 12 N -0.701 5.701 13 C 0.129 3.871 14 H 0.100 0.900 15 C 0.035 3.965 16 O -0.363 6.363 17 C 0.074 3.926 18 C 0.148 3.852 19 N -0.642 5.642 20 C -0.231 4.231 21 H 0.084 0.916 22 C -0.071 4.071 23 N -0.954 5.954 24 Si 0.978 3.022 25 H -0.285 1.285 26 H -0.297 1.297 27 H -0.267 1.267 28 C 0.132 3.868 29 C -0.129 4.129 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.233 0.767 38 H 0.414 0.586 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.247 0.753 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.117 0.883 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.879 13.077 16.559 27.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.058 4.058 3 C -0.192 4.192 4 C -0.038 4.038 5 N -0.141 5.141 6 N -0.153 5.153 7 H 0.309 0.691 8 C -0.017 4.017 9 C -0.337 4.337 10 C 0.383 3.617 11 O -0.460 6.460 12 N -0.353 5.353 13 C 0.023 3.977 14 H 0.118 0.882 15 C -0.042 4.042 16 O -0.282 6.282 17 C 0.033 3.967 18 C 0.022 3.978 19 N -0.369 5.369 20 C -0.360 4.360 21 H 0.101 0.899 22 C -0.264 4.264 23 N -0.603 5.603 24 Si 0.806 3.194 25 H -0.212 1.212 26 H -0.224 1.224 27 H -0.192 1.192 28 C 0.008 3.992 29 C -0.167 4.167 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.249 0.751 38 H 0.252 0.748 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.136 0.864 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.201 14.128 16.502 28.341 hybrid contribution 1.560 -1.327 -0.583 2.130 sum -16.641 12.801 15.919 26.347 Atomic orbital electron populations 1.21720 0.92954 1.01658 1.02694 1.19977 0.96818 0.96082 0.92950 1.21731 1.00446 0.94263 1.02720 1.22537 0.94153 0.93305 0.93785 1.77082 1.21035 1.15459 1.00481 1.46188 1.37883 1.20823 1.10424 0.69080 1.23772 0.93755 0.94440 0.89760 1.20276 1.15345 1.04547 0.93513 1.17533 0.76975 0.79419 0.87765 1.90701 1.60781 1.67828 1.26672 1.45710 1.51045 1.28766 1.09819 1.22115 0.94703 0.91169 0.89733 0.88173 1.23905 0.87808 0.95287 0.97245 1.88981 1.44725 1.16654 1.77817 1.23403 0.92177 0.84019 0.97085 1.22528 0.88428 0.92903 0.93922 1.46260 1.14565 1.72292 1.03774 1.19405 0.91787 1.32221 0.92562 0.89857 1.25665 1.02514 1.02798 0.95382 1.70024 1.40133 1.52222 0.97952 0.85068 0.79051 0.78094 0.77211 1.21175 1.22360 1.19158 1.22743 0.92364 0.93440 0.90671 1.22974 0.93663 0.94748 1.05360 0.92264 0.90750 0.93442 0.88502 0.93729 0.90714 0.92231 0.75054 0.74845 0.92942 0.88850 0.94630 0.95220 0.94373 0.92496 0.90340 0.86446 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.18 71.98 0.66 -1.68 16 2 C -0.04 -0.80 3.26 -11.54 -0.04 -0.84 16 3 C -0.13 -2.46 9.17 71.98 0.66 -1.80 16 4 C 0.13 2.76 5.77 43.52 0.25 3.01 16 5 N -0.32 -5.97 12.63 -46.67 -0.59 -6.56 16 6 N -0.45 -4.61 7.29 -56.31 -0.41 -5.02 16 7 H 0.46 1.21 8.96 -213.43 -1.91 -0.70 16 8 C 0.14 1.33 11.52 84.28 0.97 2.30 16 9 C -0.32 -6.12 6.13 -20.15 -0.12 -6.24 16 10 C 0.59 13.83 7.81 86.67 0.68 14.51 16 11 O -0.58 -17.95 14.21 -4.05 -0.06 -18.01 16 12 N -0.70 -13.21 5.07 -440.51 -2.23 -15.44 16 13 C 0.13 3.14 3.49 46.11 0.16 3.30 16 14 H 0.10 2.62 7.56 -2.39 -0.02 2.61 16 15 C 0.04 1.11 7.37 72.51 0.53 1.64 16 16 O -0.36 -13.79 11.44 -148.98 -1.70 -15.49 16 17 C 0.07 2.64 1.28 -10.66 -0.01 2.63 16 18 C 0.15 7.04 6.90 86.09 0.59 7.64 16 19 N -0.64 -33.39 3.70 -741.11 -2.74 -36.13 16 20 C -0.23 -13.30 10.69 84.03 0.90 -12.40 16 21 H 0.08 4.57 7.83 -2.91 -0.02 4.54 16 22 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 23 N -0.95 -59.28 11.52 21.65 0.25 -59.03 16 24 Si 0.98 46.77 29.56 68.60 2.03 48.80 16 25 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 C 0.13 5.02 8.47 86.09 0.73 5.75 16 29 C -0.13 -3.04 6.25 31.34 0.20 -2.84 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 2.49 5.60 -2.39 -0.01 2.48 16 34 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.23 -0.12 7.46 -2.91 -0.02 -0.14 16 38 H 0.41 4.86 7.31 -92.71 -0.68 4.18 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.09 2.77 8.06 -2.39 -0.02 2.75 16 41 H 0.04 1.68 7.96 -2.39 -0.02 1.66 16 42 H 0.03 1.65 7.39 -2.39 -0.02 1.63 16 43 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.12 1.92 7.69 -2.38 -0.02 1.91 16 47 H 0.10 2.26 7.83 -2.39 -0.02 2.24 16 Total: -1.00 -83.09 384.78 -0.42 -83.51 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -1.58 Total: 12.10 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.63 Total: 11.29 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -5.73 Total: -122.19 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.76 Total: -33.50 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -83.09 -0.42 -83.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053857208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.622 kcal (2) G-P(sol) polarization free energy of solvation -83.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds