Wall clock time and date at job start Tue Mar 31 2020 19:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47161 * 2 1 4 4 C 1.50704 * 109.46908 * 120.00381 * 2 1 3 5 5 N 1.30452 * 125.98382 * 300.32742 * 4 2 1 6 6 N 1.39932 * 108.89461 * 180.16410 * 5 4 2 7 7 H 0.97006 * 125.75544 * 179.81215 * 6 5 4 8 8 C 1.34261 * 108.49519 * 359.54625 * 6 5 4 9 9 C 1.38048 * 107.41024 * 0.26710 * 8 6 5 10 10 C 1.47432 * 126.40944 * 180.02562 * 9 8 6 11 11 O 1.21613 * 119.99588 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00204 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99769 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.73775 * 34.29859 * 13 12 10 15 15 C 1.54470 * 110.82498 * 270.87753 * 13 12 10 16 16 O 1.43515 * 107.57766 * 220.41322 * 15 13 12 17 17 C 1.42539 * 109.63997 * 359.36742 * 16 15 13 18 18 C 1.52954 * 116.16036 * 253.33172 * 17 16 15 19 19 N 1.47764 * 85.80415 * 218.94218 * 18 17 16 20 20 C 1.36945 * 134.40826 * 203.94197 * 19 18 17 21 21 H 1.08000 * 119.99565 * 173.48095 * 20 19 18 22 22 C 1.38804 * 120.00025 * 353.47753 * 20 19 18 23 23 N 1.31618 * 119.99953 * 5.08627 * 22 20 19 24 24 Si 1.86806 * 120.00224 * 185.08875 * 22 20 19 25 25 H 1.48496 * 109.47246 * 94.98690 * 24 22 20 26 26 H 1.48500 * 109.46804 * 214.98810 * 24 22 20 27 27 H 1.48500 * 109.46511 * 334.98561 * 24 22 20 28 28 C 1.47776 * 91.18504 * 23.91921 * 19 18 17 29 29 C 1.54262 * 106.60622 * 22.89394 * 17 16 15 30 30 H 1.09002 * 109.47095 * 299.99748 * 1 2 3 31 31 H 1.08997 * 109.46827 * 60.00257 * 1 2 3 32 32 H 1.09001 * 109.47441 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47022 * 239.99308 * 2 1 3 34 34 H 1.09006 * 109.47102 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47040 * 299.99613 * 3 2 1 36 36 H 1.09002 * 109.46911 * 60.00139 * 3 2 1 37 37 H 1.07994 * 126.29640 * 180.26255 * 8 6 5 38 38 H 0.97000 * 119.99969 * 0.02562 * 12 10 9 39 39 H 1.08994 * 109.83146 * 339.93092 * 15 13 12 40 40 H 1.09005 * 109.82669 * 100.80921 * 15 13 12 41 41 H 1.08997 * 113.82161 * 333.16552 * 18 17 16 42 42 H 1.09003 * 113.81571 * 104.72383 * 18 17 16 43 43 H 0.97002 * 120.00013 * 180.02562 * 23 22 20 44 44 H 1.08998 * 113.82070 * 221.85439 * 28 19 18 45 45 H 1.09004 * 113.92559 * 90.31213 * 28 19 18 46 46 H 1.08998 * 111.33634 * 207.20728 * 29 17 16 47 47 H 1.09005 * 111.09307 * 82.88638 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7853 -0.3717 2.4657 6 7 2.4299 -1.2728 3.3204 7 1 2.4114 -1.2467 4.2899 8 6 3.0736 -2.1832 2.5724 9 6 2.8479 -1.8640 1.2484 10 6 3.3614 -2.5911 0.0731 11 8 3.0892 -2.2050 -1.0475 12 7 4.1326 -3.6837 0.2406 13 6 4.6432 -4.4058 -0.9273 14 1 4.8602 -3.7162 -1.7430 15 6 3.6451 -5.4947 -1.3793 16 8 4.4059 -6.6559 -1.7432 17 6 5.7961 -6.3901 -1.5744 18 6 6.6062 -6.1958 -2.8572 19 7 7.6731 -6.9517 -2.1691 20 6 9.0345 -7.0224 -2.2997 21 1 9.6164 -7.5898 -1.5885 22 6 9.6663 -6.3650 -3.3463 23 7 8.9708 -5.5928 -4.1539 24 14 11.5037 -6.5763 -3.6086 25 1 11.7411 -7.6492 -4.6074 26 1 12.0827 -5.3017 -4.1041 27 1 12.1479 -6.9457 -2.3226 28 6 6.6843 -7.6006 -1.2831 29 6 5.9039 -5.2366 -0.5558 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9562 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 3.6600 -3.0126 2.9390 38 1 4.3494 -3.9919 1.1345 39 1 2.9676 -5.7379 -0.5609 40 1 3.0751 -5.1401 -2.2381 41 1 6.1899 -6.7108 -3.7230 42 1 6.8645 -5.1567 -3.0615 43 1 9.4122 -5.1336 -4.8855 44 1 7.0044 -7.6717 -0.2436 45 1 6.2906 -8.5394 -1.6727 46 1 6.8150 -4.6578 -0.7070 47 1 5.8422 -5.6093 0.4667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053857209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:24 Heat of formation + Delta-G solvation = 44.967023 kcal Electronic energy + Delta-G solvation = -28940.140050 eV Core-core repulsion = 24933.354895 eV Total energy + Delta-G solvation = -4006.785156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.76908 -40.11257 -38.81529 -36.27696 -35.78838 -34.41934 -32.09456 -31.41141 -30.95195 -29.55525 -28.02151 -27.25558 -25.78782 -24.93092 -23.73008 -23.50042 -22.01650 -21.34209 -20.30991 -19.33745 -18.72709 -18.71674 -16.78965 -16.76160 -16.21273 -15.51383 -15.37084 -15.07492 -14.91237 -14.78728 -14.60015 -14.36363 -14.19520 -13.73027 -13.51885 -13.27205 -13.19346 -12.86189 -12.60823 -12.31083 -11.93934 -11.68409 -11.63944 -11.41059 -11.36656 -11.22936 -11.10790 -10.98598 -10.93161 -10.81664 -10.70974 -10.31133 -10.00272 -9.83545 -9.74563 -9.55589 -9.22134 -8.95442 -8.80578 -8.73211 -6.90699 -5.80104 -3.12433 1.18929 1.91806 2.35175 3.11018 3.33073 3.38372 3.43157 3.45744 4.12574 4.23961 4.29256 4.48836 4.64310 4.74256 4.91091 5.05868 5.07131 5.14247 5.18594 5.22336 5.26069 5.35700 5.39024 5.42947 5.52654 5.54879 5.71335 5.74361 5.87697 5.95139 6.01363 6.08420 6.11402 6.14513 6.30388 6.32561 6.36905 6.49626 6.60195 6.70405 6.75277 7.04108 7.21328 7.21388 7.49035 7.51128 7.71636 7.94341 8.23464 9.01579 9.67637 10.56305 11.37464 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.002456 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.083511 B =11398.048465 C =11692.198815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.034 4.034 3 C -0.140 4.140 4 C 0.146 3.854 5 N -0.295 5.295 6 N -0.462 5.462 7 H 0.444 0.556 8 C 0.104 3.896 9 C -0.284 4.284 10 C 0.593 3.407 11 O -0.535 6.535 12 N -0.716 5.716 13 C 0.114 3.886 14 H 0.109 0.891 15 C 0.046 3.954 16 O -0.369 6.369 17 C 0.055 3.945 18 C 0.160 3.840 19 N -0.605 5.605 20 C -0.224 4.224 21 H 0.082 0.918 22 C -0.005 4.005 23 N -0.916 5.916 24 Si 0.910 3.090 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.129 3.871 29 C -0.121 4.121 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.120 0.880 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.186 0.814 38 H 0.396 0.604 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.099 0.901 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.575 9.261 15.969 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C -0.198 4.198 4 C -0.022 4.022 5 N -0.117 5.117 6 N -0.166 5.166 7 H 0.288 0.712 8 C -0.049 4.049 9 C -0.299 4.299 10 C 0.381 3.619 11 O -0.412 6.412 12 N -0.367 5.367 13 C 0.009 3.991 14 H 0.127 0.873 15 C -0.033 4.033 16 O -0.286 6.286 17 C 0.015 3.985 18 C 0.034 3.966 19 N -0.333 5.333 20 C -0.352 4.352 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.562 5.562 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.003 3.997 29 C -0.159 4.159 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.203 0.797 38 H 0.231 0.769 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.117 0.883 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.145 10.257 15.696 24.743 hybrid contribution 1.675 -0.896 0.436 1.949 sum -14.470 9.361 16.132 23.606 Atomic orbital electron populations 1.21781 0.93858 1.01998 1.02075 1.20026 0.96017 0.95833 0.93544 1.21782 1.01265 0.94654 1.02066 1.22446 0.93569 0.92743 0.93467 1.77150 1.19883 1.14184 1.00478 1.46134 1.39168 1.21699 1.09626 0.71185 1.23161 0.95829 0.94623 0.91311 1.20312 1.13369 1.03680 0.92581 1.17263 0.77552 0.79348 0.87745 1.90732 1.58429 1.67061 1.24963 1.45764 1.52599 1.28902 1.09477 1.22638 0.93283 0.94094 0.89071 0.87311 1.23453 0.94125 0.85809 0.99872 1.88308 1.17601 1.34801 1.87928 1.24247 0.79921 0.96095 0.98265 1.22500 0.84422 0.98260 0.91396 1.45711 1.00815 1.47650 1.39154 1.18955 0.79458 1.27965 1.08797 0.90062 1.24837 0.98179 0.99880 0.97319 1.69838 1.34690 1.32552 1.19122 0.86129 0.84672 0.77195 0.77941 1.21562 1.21680 1.20554 1.22546 0.87868 0.94018 0.95288 1.23006 0.97795 0.96180 0.98908 0.92476 0.91849 0.92675 0.86247 0.92598 0.91832 0.92482 0.79709 0.76921 0.91850 0.91060 0.94514 0.90985 0.93496 0.93405 0.93914 0.88279 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.18 37.16 0.34 -0.96 16 2 C -0.03 -0.37 3.26 -91.77 -0.30 -0.67 16 3 C -0.14 -1.35 9.18 37.15 0.34 -1.01 16 4 C 0.15 1.66 5.77 -82.02 -0.47 1.19 16 5 N -0.30 -3.07 12.63 33.89 0.43 -2.65 16 6 N -0.46 -3.16 7.29 30.85 0.22 -2.93 16 7 H 0.44 1.40 8.96 -182.72 -1.64 -0.24 16 8 C 0.10 0.71 11.52 -16.56 -0.19 0.52 16 9 C -0.28 -3.05 6.13 -105.07 -0.64 -3.69 16 10 C 0.59 7.64 7.81 -12.52 -0.10 7.54 16 11 O -0.53 -8.70 14.25 5.27 0.08 -8.62 16 12 N -0.72 -7.99 5.11 -52.85 -0.27 -8.26 16 13 C 0.11 1.63 3.33 -65.84 -0.22 1.41 16 14 H 0.11 1.80 7.63 -51.93 -0.40 1.41 16 15 C 0.05 0.69 7.58 37.93 0.29 0.97 16 16 O -0.37 -6.74 11.17 -35.23 -0.39 -7.13 16 17 C 0.06 1.06 1.48 -90.17 -0.13 0.92 16 18 C 0.16 3.83 6.89 -3.38 -0.02 3.80 16 19 N -0.60 -15.36 3.69 -183.21 -0.68 -16.03 16 20 C -0.22 -6.19 10.69 -15.06 -0.16 -6.35 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C 0.00 -0.14 5.50 -17.43 -0.10 -0.24 16 23 N -0.92 -26.99 11.52 55.49 0.64 -26.35 16 24 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 C 0.13 2.67 8.50 -3.38 -0.03 2.64 16 29 C -0.12 -1.88 6.05 -24.75 -0.15 -2.03 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.12 1.54 5.60 -51.93 -0.29 1.25 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.19 0.47 7.46 -52.49 -0.39 0.08 16 38 H 0.40 3.10 7.45 -40.82 -0.30 2.80 16 39 H 0.06 0.84 8.02 -51.93 -0.42 0.42 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 1.86 7.36 -51.93 -0.38 1.47 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 44 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 1.74 8.05 -51.93 -0.42 1.33 16 47 H 0.08 0.97 7.98 -51.93 -0.41 0.56 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -34.84 385.43 -9.16 -44.00 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.42 Total: 1.26 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.55 Total: 4.04 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.35 Total: -56.22 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.32 Total: -15.75 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.84 -9.16 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053857209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.965 kcal (2) G-P(sol) polarization free energy of solvation -34.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds