Wall clock time and date at job start Tue Mar 31 2020 19:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47161 * 2 1 4 4 C 1.50704 * 109.46908 * 120.00381 * 2 1 3 5 5 N 1.30452 * 125.98382 * 300.32742 * 4 2 1 6 6 N 1.39932 * 108.89461 * 180.16410 * 5 4 2 7 7 H 0.97006 * 125.75544 * 179.81215 * 6 5 4 8 8 C 1.34261 * 108.49519 * 359.54625 * 6 5 4 9 9 C 1.38048 * 107.41024 * 0.26710 * 8 6 5 10 10 C 1.47432 * 126.40944 * 180.02562 * 9 8 6 11 11 O 1.21613 * 119.99588 * 180.02562 * 10 9 8 12 12 N 1.34772 * 120.00204 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99769 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.73775 * 34.29859 * 13 12 10 15 15 C 1.54470 * 110.82498 * 270.87753 * 13 12 10 16 16 O 1.43515 * 107.57766 * 220.41322 * 15 13 12 17 17 C 1.42539 * 109.63997 * 359.36742 * 16 15 13 18 18 C 1.52954 * 116.16036 * 253.33172 * 17 16 15 19 19 N 1.47764 * 85.80415 * 218.94218 * 18 17 16 20 20 C 1.36945 * 134.40826 * 203.94197 * 19 18 17 21 21 H 1.08000 * 119.99565 * 173.48095 * 20 19 18 22 22 C 1.38804 * 120.00025 * 353.47753 * 20 19 18 23 23 N 1.31618 * 119.99953 * 5.08627 * 22 20 19 24 24 Si 1.86806 * 120.00224 * 185.08875 * 22 20 19 25 25 H 1.48496 * 109.47246 * 94.98690 * 24 22 20 26 26 H 1.48500 * 109.46804 * 214.98810 * 24 22 20 27 27 H 1.48500 * 109.46511 * 334.98561 * 24 22 20 28 28 C 1.47776 * 91.18504 * 23.91921 * 19 18 17 29 29 C 1.54262 * 106.60622 * 22.89394 * 17 16 15 30 30 H 1.09002 * 109.47095 * 299.99748 * 1 2 3 31 31 H 1.08997 * 109.46827 * 60.00257 * 1 2 3 32 32 H 1.09001 * 109.47441 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47022 * 239.99308 * 2 1 3 34 34 H 1.09006 * 109.47102 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47040 * 299.99613 * 3 2 1 36 36 H 1.09002 * 109.46911 * 60.00139 * 3 2 1 37 37 H 1.07994 * 126.29640 * 180.26255 * 8 6 5 38 38 H 0.97000 * 119.99969 * 0.02562 * 12 10 9 39 39 H 1.08994 * 109.83146 * 339.93092 * 15 13 12 40 40 H 1.09005 * 109.82669 * 100.80921 * 15 13 12 41 41 H 1.08997 * 113.82161 * 333.16552 * 18 17 16 42 42 H 1.09003 * 113.81571 * 104.72383 * 18 17 16 43 43 H 0.97002 * 120.00013 * 180.02562 * 23 22 20 44 44 H 1.08998 * 113.82070 * 221.85439 * 28 19 18 45 45 H 1.09004 * 113.92559 * 90.31213 * 28 19 18 46 46 H 1.08998 * 111.33634 * 207.20728 * 29 17 16 47 47 H 1.09005 * 111.09307 * 82.88638 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7853 -0.3717 2.4657 6 7 2.4299 -1.2728 3.3204 7 1 2.4114 -1.2467 4.2899 8 6 3.0736 -2.1832 2.5724 9 6 2.8479 -1.8640 1.2484 10 6 3.3614 -2.5911 0.0731 11 8 3.0892 -2.2050 -1.0475 12 7 4.1326 -3.6837 0.2406 13 6 4.6432 -4.4058 -0.9273 14 1 4.8602 -3.7162 -1.7430 15 6 3.6451 -5.4947 -1.3793 16 8 4.4059 -6.6559 -1.7432 17 6 5.7961 -6.3901 -1.5744 18 6 6.6062 -6.1958 -2.8572 19 7 7.6731 -6.9517 -2.1691 20 6 9.0345 -7.0224 -2.2997 21 1 9.6164 -7.5898 -1.5885 22 6 9.6663 -6.3650 -3.3463 23 7 8.9708 -5.5928 -4.1539 24 14 11.5037 -6.5763 -3.6086 25 1 11.7411 -7.6492 -4.6074 26 1 12.0827 -5.3017 -4.1041 27 1 12.1479 -6.9457 -2.3226 28 6 6.6843 -7.6006 -1.2831 29 6 5.9039 -5.2366 -0.5558 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9562 -0.8900 36 1 1.6767 1.9562 0.8900 37 1 3.6600 -3.0126 2.9390 38 1 4.3494 -3.9919 1.1345 39 1 2.9676 -5.7379 -0.5609 40 1 3.0751 -5.1401 -2.2381 41 1 6.1899 -6.7108 -3.7230 42 1 6.8645 -5.1567 -3.0615 43 1 9.4122 -5.1336 -4.8855 44 1 7.0044 -7.6717 -0.2436 45 1 6.2906 -8.5394 -1.6727 46 1 6.8150 -4.6578 -0.7070 47 1 5.8422 -5.6093 0.4667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053857209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:22 Heat of formation + Delta-G solvation = 18.913798 kcal Electronic energy + Delta-G solvation = -28941.269803 eV Core-core repulsion = 24933.354895 eV Total energy + Delta-G solvation = -4007.914908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.48052 -41.50020 -39.96919 -37.85240 -36.61370 -35.57052 -34.12983 -32.37545 -31.67911 -30.67445 -29.66565 -28.01756 -27.45789 -26.70838 -24.56599 -24.29255 -23.85319 -22.41369 -21.29216 -20.32205 -20.08546 -19.44419 -18.72922 -17.81804 -17.30284 -17.10343 -16.48874 -16.40592 -16.19037 -15.67867 -15.64434 -15.53469 -15.40795 -15.18159 -14.67522 -14.37257 -14.19977 -14.07454 -13.93095 -13.64426 -13.35744 -13.03808 -12.86369 -12.81902 -12.65156 -12.56595 -12.38091 -12.35088 -12.15191 -12.01107 -11.93849 -11.81917 -11.74292 -11.43339 -10.88104 -10.72884 -10.51662 -10.31943 -10.19028 -9.75569 -8.95264 -7.91830 -5.26015 0.55905 1.10295 1.46745 1.49304 1.58006 1.80682 2.14206 2.42432 2.45573 2.89081 3.22495 3.35857 3.43406 3.58729 3.70566 3.74346 3.79884 4.05630 4.10245 4.12643 4.17687 4.27265 4.39959 4.47767 4.62560 4.69768 4.74795 4.79214 4.79803 4.86495 4.93469 4.95577 4.96924 4.97801 5.07592 5.12879 5.17494 5.22621 5.30168 5.34094 5.45826 5.51217 5.56175 5.87247 6.20375 6.30142 6.49027 6.68575 6.89084 7.32219 7.59106 8.53533 9.25919 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.002456 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.083511 B =11398.048465 C =11692.198815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.039 4.039 3 C -0.133 4.133 4 C 0.130 3.870 5 N -0.317 5.317 6 N -0.446 5.446 7 H 0.462 0.538 8 C 0.140 3.860 9 C -0.322 4.322 10 C 0.593 3.407 11 O -0.579 6.579 12 N -0.698 5.698 13 C 0.127 3.873 14 H 0.077 0.923 15 C 0.045 3.955 16 O -0.379 6.379 17 C 0.077 3.923 18 C 0.152 3.848 19 N -0.629 5.629 20 C -0.231 4.231 21 H 0.093 0.907 22 C -0.067 4.067 23 N -0.953 5.953 24 Si 0.979 3.021 25 H -0.291 1.291 26 H -0.296 1.296 27 H -0.261 1.261 28 C 0.131 3.869 29 C -0.107 4.107 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.237 0.763 38 H 0.418 0.582 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.006 0.994 42 H 0.042 0.958 43 H 0.248 0.752 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.077 0.923 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.669 8.515 19.839 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.060 4.060 3 C -0.191 4.191 4 C -0.037 4.037 5 N -0.140 5.140 6 N -0.152 5.152 7 H 0.310 0.690 8 C -0.015 4.015 9 C -0.337 4.337 10 C 0.382 3.618 11 O -0.460 6.460 12 N -0.351 5.351 13 C 0.021 3.979 14 H 0.095 0.905 15 C -0.033 4.033 16 O -0.297 6.297 17 C 0.036 3.964 18 C 0.026 3.974 19 N -0.358 5.358 20 C -0.359 4.359 21 H 0.110 0.890 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.807 3.193 25 H -0.218 1.218 26 H -0.223 1.223 27 H -0.185 1.185 28 C 0.006 3.994 29 C -0.145 4.145 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.253 0.747 38 H 0.256 0.744 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.024 0.976 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.260 9.493 19.664 27.224 hybrid contribution 1.625 -0.688 -0.714 1.904 sum -14.635 8.805 18.949 25.510 Atomic orbital electron populations 1.21718 0.92873 1.01671 1.02722 1.19975 0.96891 0.96123 0.92966 1.21727 1.00417 0.94243 1.02751 1.22508 0.94124 0.93323 0.93787 1.77088 1.20969 1.15510 1.00390 1.46185 1.37856 1.20706 1.10441 0.68987 1.23788 0.93697 0.94427 0.89546 1.20215 1.15542 1.04492 0.93418 1.17606 0.77025 0.79257 0.87876 1.90722 1.60091 1.68220 1.26926 1.45462 1.51976 1.28206 1.09482 1.22206 0.92787 0.93393 0.89500 0.90476 1.23604 0.94086 0.84968 1.00637 1.88291 1.17002 1.36159 1.88231 1.23775 0.80128 0.96607 0.95888 1.22389 0.85924 0.96052 0.93015 1.46019 1.00912 1.48775 1.40071 1.19413 0.80935 1.26909 1.08668 0.88955 1.25711 1.02671 1.00133 0.97527 1.70046 1.36332 1.33965 1.19780 0.85052 0.79514 0.76453 0.78286 1.21810 1.22306 1.18487 1.22687 0.86659 0.94117 0.95941 1.22896 0.97172 0.94499 0.99960 0.92107 0.90831 0.93442 0.88769 0.93791 0.90802 0.92054 0.74710 0.74396 0.88762 0.91981 0.97571 0.93944 0.94288 0.90179 0.93920 0.90432 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.18 71.98 0.66 -1.81 16 2 C -0.04 -0.88 3.26 -11.54 -0.04 -0.91 16 3 C -0.13 -2.62 9.18 71.98 0.66 -1.96 16 4 C 0.13 2.87 5.77 43.51 0.25 3.12 16 5 N -0.32 -6.04 12.63 -46.68 -0.59 -6.63 16 6 N -0.45 -4.51 7.29 -56.32 -0.41 -4.92 16 7 H 0.46 1.02 8.96 -213.42 -1.91 -0.89 16 8 C 0.14 1.31 11.52 84.28 0.97 2.29 16 9 C -0.32 -6.30 6.13 -20.15 -0.12 -6.43 16 10 C 0.59 14.75 7.81 86.67 0.68 15.42 16 11 O -0.58 -19.55 14.25 -4.07 -0.06 -19.61 16 12 N -0.70 -13.91 5.11 -439.37 -2.25 -16.16 16 13 C 0.13 3.53 3.33 46.35 0.15 3.69 16 14 H 0.08 2.67 7.63 -2.39 -0.02 2.66 16 15 C 0.04 1.28 7.58 72.48 0.55 1.83 16 16 O -0.38 -13.42 11.17 -148.98 -1.66 -15.09 16 17 C 0.08 2.89 1.48 -10.35 -0.02 2.87 16 18 C 0.15 7.61 6.89 86.12 0.59 8.20 16 19 N -0.63 -32.18 3.69 -739.67 -2.73 -34.90 16 20 C -0.23 -12.76 10.69 84.03 0.90 -11.86 16 21 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 22 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 23 N -0.95 -58.37 11.52 21.65 0.25 -58.12 16 24 Si 0.98 45.45 29.56 68.60 2.03 47.48 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 28 C 0.13 5.19 8.50 86.11 0.73 5.93 16 29 C -0.11 -3.13 6.05 31.88 0.19 -2.94 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 2.60 5.60 -2.39 -0.01 2.59 16 34 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.24 -0.37 7.46 -2.91 -0.02 -0.40 16 38 H 0.42 4.60 7.45 -92.71 -0.69 3.91 16 39 H 0.09 2.17 8.02 -2.39 -0.02 2.15 16 40 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.04 2.34 7.36 -2.39 -0.02 2.32 16 43 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.08 2.69 8.11 -2.39 -0.02 2.67 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.08 2.67 8.05 -2.39 -0.02 2.65 16 47 H 0.12 2.47 7.98 -2.38 -0.02 2.45 16 Total: -1.00 -80.72 385.43 -0.39 -81.10 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -1.60 Total: 12.77 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.63 Total: 14.07 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -5.72 Total: -120.73 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -1.72 Total: -34.70 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -80.72 -0.39 -81.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053857209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.018 kcal (2) G-P(sol) polarization free energy of solvation -80.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds